Strain Fitness in Escherichia coli BW25113 around b1511

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyneO and ydeV are separated by 629 nucleotidesydeV and lsrR are separated by 78 nucleotides b4696: yneO - no description, at 1,590,689 to 1,596,011 yneO b1511: ydeV - putative kinase (VIMSS), at 1,596,641 to 1,598,233 ydeV b1512: lsrR - lsr operon transcriptional repressor (NCBI), at 1,598,312 to 1,599,265 lsrR Position (kb) 1596 1597 1598 1599Strain fitness (log2 ratio) -2 -1 0 1at 1595.679 kb on - strandat 1595.679 kb on - strandat 1595.731 kb on - strandat 1595.744 kb on - strandat 1595.771 kb on - strandat 1595.876 kb on - strandat 1595.948 kb on + strandat 1596.420 kb on + strandat 1596.625 kb on - strandat 1596.625 kb on - strandat 1596.647 kb on - strandat 1596.647 kb on - strandat 1596.647 kb on - strandat 1596.684 kb on - strandat 1596.684 kb on - strandat 1596.684 kb on - strandat 1596.703 kb on - strandat 1596.866 kb on + strand, within ydeVat 1597.121 kb on - strand, within ydeVat 1597.151 kb on + strand, within ydeVat 1597.556 kb on - strand, within ydeVat 1597.602 kb on + strand, within ydeVat 1598.188 kb on - strandat 1598.354 kb on - strandat 1598.354 kb on - strandat 1598.443 kb on + strand, within lsrRat 1598.582 kb on + strand, within lsrRat 1598.950 kb on + strand, within lsrRat 1598.950 kb on + strand, within lsrRat 1598.997 kb on - strand, within lsrRat 1599.098 kb on - strand, within lsrRat 1599.110 kb on - strand, within lsrR

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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1,595,679 - +0.0
1,595,679 - -0.1
1,595,731 - +0.4
1,595,744 - -0.1
1,595,771 - +0.0
1,595,876 - -2.4
1,595,948 + -0.5
1,596,420 + +0.2
1,596,625 - -0.6
1,596,625 - -0.6
1,596,647 - +1.5
1,596,647 - +0.4
1,596,647 - -0.9
1,596,684 - -0.5
1,596,684 - -1.3
1,596,684 - -0.8
1,596,703 - -0.2
1,596,866 + ydeV b1511 0.14 +1.5
1,597,121 - ydeV b1511 0.30 +0.9
1,597,151 + ydeV b1511 0.32 +0.3
1,597,556 - ydeV b1511 0.57 +0.7
1,597,602 + ydeV b1511 0.60 +0.4
1,598,188 - +0.0
1,598,354 - -2.2
1,598,354 - -0.3
1,598,443 + lsrR b1512 0.14 +0.0
1,598,582 + lsrR b1512 0.28 +0.2
1,598,950 + lsrR b1512 0.67 +1.0
1,598,950 + lsrR b1512 0.67 -0.4
1,598,997 - lsrR b1512 0.72 +0.1
1,599,098 - lsrR b1512 0.82 +0.2
1,599,110 - lsrR b1512 0.84 +0.2

Or see this region's nucleotide sequence