Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS22300

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS22295 and UW163_RS22300 are separated by 270 nucleotidesUW163_RS22300 and UW163_RS22305 are separated by 464 nucleotides UW163_RS22295: UW163_RS22295 - divalent metal cation transporter, at 1,589,433 to 1,590,761 _RS22295 UW163_RS22300: UW163_RS22300 - GGDEF domain-containing protein, at 1,591,032 to 1,592,075 _RS22300 UW163_RS22305: UW163_RS22305 - type VI secretion system tip protein VgrG, at 1,592,540 to 1,595,275 _RS22305 Position (kb) 1591 1592 1593Strain fitness (log2 ratio) -2 -1 0 1at 1590.084 kb on + strand, within UW163_RS22295at 1590.132 kb on + strand, within UW163_RS22295at 1590.132 kb on + strand, within UW163_RS22295at 1590.133 kb on - strand, within UW163_RS22295at 1590.790 kb on - strandat 1590.883 kb on - strandat 1590.948 kb on - strandat 1590.948 kb on - strandat 1591.014 kb on + strandat 1591.075 kb on - strandat 1591.119 kb on - strandat 1591.119 kb on - strandat 1591.190 kb on + strand, within UW163_RS22300at 1591.296 kb on + strand, within UW163_RS22300at 1591.296 kb on + strand, within UW163_RS22300at 1591.296 kb on + strand, within UW163_RS22300at 1591.296 kb on + strand, within UW163_RS22300at 1591.297 kb on - strand, within UW163_RS22300at 1591.297 kb on - strand, within UW163_RS22300at 1591.449 kb on + strand, within UW163_RS22300at 1591.449 kb on + strand, within UW163_RS22300at 1591.449 kb on + strand, within UW163_RS22300at 1591.449 kb on + strand, within UW163_RS22300at 1591.450 kb on - strand, within UW163_RS22300at 1591.491 kb on + strand, within UW163_RS22300at 1591.492 kb on - strand, within UW163_RS22300at 1591.492 kb on - strand, within UW163_RS22300at 1591.656 kb on + strandat 1591.656 kb on + strand, within UW163_RS22300at 1591.657 kb on - strand, within UW163_RS22300at 1592.014 kb on + strandat 1592.014 kb on + strandat 1592.014 kb on + strandat 1592.014 kb on + strandat 1592.015 kb on - strandat 1592.015 kb on - strandat 1592.015 kb on - strandat 1592.016 kb on - strandat 1592.216 kb on + strandat 1592.216 kb on + strandat 1592.217 kb on - strandat 1592.311 kb on - strandat 1592.476 kb on + strandat 1592.476 kb on + strandat 1592.657 kb on + strandat 1592.657 kb on + strandat 1592.657 kb on + strandat 1592.658 kb on - strandat 1592.658 kb on - strandat 1592.703 kb on + strandat 1592.704 kb on - strandat 1592.916 kb on + strand, within UW163_RS22305

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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1,590,084 + UW163_RS22295 0.49 +1.1
1,590,132 + UW163_RS22295 0.53 +0.0
1,590,132 + UW163_RS22295 0.53 -0.1
1,590,133 - UW163_RS22295 0.53 +0.9
1,590,790 - +0.3
1,590,883 - +0.4
1,590,948 - +0.4
1,590,948 - +0.8
1,591,014 + +0.4
1,591,075 - -1.2
1,591,119 - +0.3
1,591,119 - -0.2
1,591,190 + UW163_RS22300 0.15 +0.4
1,591,296 + UW163_RS22300 0.25 +0.1
1,591,296 + UW163_RS22300 0.25 -0.5
1,591,296 + UW163_RS22300 0.25 +0.2
1,591,296 + UW163_RS22300 0.25 +0.0
1,591,297 - UW163_RS22300 0.25 +0.1
1,591,297 - UW163_RS22300 0.25 +0.2
1,591,449 + UW163_RS22300 0.40 +0.8
1,591,449 + UW163_RS22300 0.40 -1.5
1,591,449 + UW163_RS22300 0.40 +0.1
1,591,449 + UW163_RS22300 0.40 +0.1
1,591,450 - UW163_RS22300 0.40 +0.8
1,591,491 + UW163_RS22300 0.44 +0.1
1,591,492 - UW163_RS22300 0.44 +0.1
1,591,492 - UW163_RS22300 0.44 -0.4
1,591,656 + +1.7
1,591,656 + UW163_RS22300 0.60 -0.8
1,591,657 - UW163_RS22300 0.60 +0.7
1,592,014 + +0.3
1,592,014 + -0.3
1,592,014 + -0.5
1,592,014 + +0.5
1,592,015 - -1.2
1,592,015 - -0.1
1,592,015 - +0.2
1,592,016 - +0.1
1,592,216 + +0.5
1,592,216 + -2.2
1,592,217 - +0.2
1,592,311 - +1.6
1,592,476 + +0.1
1,592,476 + +0.4
1,592,657 + +0.7
1,592,657 + +0.4
1,592,657 + +0.5
1,592,658 - -0.5
1,592,658 - -0.0
1,592,703 + +0.1
1,592,704 - +0.2
1,592,916 + UW163_RS22305 0.14 -1.7

Or see this region's nucleotide sequence