Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS22295 and UW163_RS22300 are separated by 270 nucleotides UW163_RS22300 and UW163_RS22305 are separated by 464 nucleotides
UW163_RS22295: UW163_RS22295 - divalent metal cation transporter, at 1,589,433 to 1,590,761
_RS22295
UW163_RS22300: UW163_RS22300 - GGDEF domain-containing protein, at 1,591,032 to 1,592,075
_RS22300
UW163_RS22305: UW163_RS22305 - type VI secretion system tip protein VgrG, at 1,592,540 to 1,595,275
_RS22305
Position (kb)
1591
1592
1593 Strain fitness (log2 ratio)
-2
-1
0
1 at 1590.084 kb on + strand, within UW163_RS22295 at 1590.132 kb on + strand, within UW163_RS22295 at 1590.132 kb on + strand, within UW163_RS22295 at 1590.133 kb on - strand, within UW163_RS22295 at 1590.790 kb on - strand at 1590.883 kb on - strand at 1590.948 kb on - strand at 1590.948 kb on - strand at 1591.014 kb on + strand at 1591.075 kb on - strand at 1591.119 kb on - strand at 1591.119 kb on - strand at 1591.190 kb on + strand, within UW163_RS22300 at 1591.296 kb on + strand, within UW163_RS22300 at 1591.296 kb on + strand, within UW163_RS22300 at 1591.296 kb on + strand, within UW163_RS22300 at 1591.296 kb on + strand, within UW163_RS22300 at 1591.297 kb on - strand, within UW163_RS22300 at 1591.297 kb on - strand, within UW163_RS22300 at 1591.449 kb on + strand, within UW163_RS22300 at 1591.449 kb on + strand, within UW163_RS22300 at 1591.449 kb on + strand, within UW163_RS22300 at 1591.449 kb on + strand, within UW163_RS22300 at 1591.450 kb on - strand, within UW163_RS22300 at 1591.491 kb on + strand, within UW163_RS22300 at 1591.492 kb on - strand, within UW163_RS22300 at 1591.492 kb on - strand, within UW163_RS22300 at 1591.656 kb on + strand at 1591.656 kb on + strand, within UW163_RS22300 at 1591.657 kb on - strand, within UW163_RS22300 at 1592.014 kb on + strand at 1592.014 kb on + strand at 1592.014 kb on + strand at 1592.014 kb on + strand at 1592.015 kb on - strand at 1592.015 kb on - strand at 1592.015 kb on - strand at 1592.016 kb on - strand at 1592.216 kb on + strand at 1592.216 kb on + strand at 1592.217 kb on - strand at 1592.311 kb on - strand at 1592.476 kb on + strand at 1592.476 kb on + strand at 1592.657 kb on + strand at 1592.657 kb on + strand at 1592.657 kb on + strand at 1592.658 kb on - strand at 1592.658 kb on - strand at 1592.703 kb on + strand at 1592.704 kb on - strand at 1592.916 kb on + strand, within UW163_RS22305
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 1,590,084 + UW163_RS22295 0.49 +1.1 1,590,132 + UW163_RS22295 0.53 +0.0 1,590,132 + UW163_RS22295 0.53 -0.1 1,590,133 - UW163_RS22295 0.53 +0.9 1,590,790 - +0.3 1,590,883 - +0.4 1,590,948 - +0.4 1,590,948 - +0.8 1,591,014 + +0.4 1,591,075 - -1.2 1,591,119 - +0.3 1,591,119 - -0.2 1,591,190 + UW163_RS22300 0.15 +0.4 1,591,296 + UW163_RS22300 0.25 +0.1 1,591,296 + UW163_RS22300 0.25 -0.5 1,591,296 + UW163_RS22300 0.25 +0.2 1,591,296 + UW163_RS22300 0.25 +0.0 1,591,297 - UW163_RS22300 0.25 +0.1 1,591,297 - UW163_RS22300 0.25 +0.2 1,591,449 + UW163_RS22300 0.40 +0.8 1,591,449 + UW163_RS22300 0.40 -1.5 1,591,449 + UW163_RS22300 0.40 +0.1 1,591,449 + UW163_RS22300 0.40 +0.1 1,591,450 - UW163_RS22300 0.40 +0.8 1,591,491 + UW163_RS22300 0.44 +0.1 1,591,492 - UW163_RS22300 0.44 +0.1 1,591,492 - UW163_RS22300 0.44 -0.4 1,591,656 + +1.7 1,591,656 + UW163_RS22300 0.60 -0.8 1,591,657 - UW163_RS22300 0.60 +0.7 1,592,014 + +0.3 1,592,014 + -0.3 1,592,014 + -0.5 1,592,014 + +0.5 1,592,015 - -1.2 1,592,015 - -0.1 1,592,015 - +0.2 1,592,016 - +0.1 1,592,216 + +0.5 1,592,216 + -2.2 1,592,217 - +0.2 1,592,311 - +1.6 1,592,476 + +0.1 1,592,476 + +0.4 1,592,657 + +0.7 1,592,657 + +0.4 1,592,657 + +0.5 1,592,658 - -0.5 1,592,658 - -0.0 1,592,703 + +0.1 1,592,704 - +0.2 1,592,916 + UW163_RS22305 0.14 -1.7
Or see this region's nucleotide sequence