Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS19100

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS19090 and UW163_RS19095 are separated by 247 nucleotidesUW163_RS19095 and UW163_RS19100 are separated by 60 nucleotidesUW163_RS19100 and UW163_RS19105 overlap by 4 nucleotides UW163_RS19090: UW163_RS19090 - hypothetical protein, at 695,098 to 695,880 _RS19090 UW163_RS19095: UW163_RS19095 - hypothetical protein, at 696,128 to 696,811 _RS19095 UW163_RS19100: UW163_RS19100 - type VI secretion system protein ImpK, at 696,872 to 697,660 _RS19100 UW163_RS19105: UW163_RS19105 - type VI secretion system baseplate subunit TssK, at 697,657 to 699,003 _RS19105 Position (kb) 696 697 698Strain fitness (log2 ratio) -1 0 1 2at 695.989 kb on + strandat 695.989 kb on + strandat 695.989 kb on + strandat 695.989 kb on + strandat 695.990 kb on - strandat 695.999 kb on - strandat 696.077 kb on - strandat 696.077 kb on - strandat 696.298 kb on - strand, within UW163_RS19095at 696.298 kb on - strand, within UW163_RS19095at 696.313 kb on - strand, within UW163_RS19095at 696.364 kb on - strand, within UW163_RS19095at 696.534 kb on + strand, within UW163_RS19095at 696.534 kb on + strand, within UW163_RS19095at 696.535 kb on - strand, within UW163_RS19095at 696.535 kb on - strand, within UW163_RS19095at 696.931 kb on - strandat 696.984 kb on + strand, within UW163_RS19100at 696.985 kb on - strand, within UW163_RS19100at 696.985 kb on - strand, within UW163_RS19100at 697.146 kb on + strand, within UW163_RS19100at 697.146 kb on + strand, within UW163_RS19100at 697.176 kb on + strand, within UW163_RS19100at 697.176 kb on + strand, within UW163_RS19100at 697.176 kb on + strand, within UW163_RS19100at 697.176 kb on + strand, within UW163_RS19100at 697.176 kb on + strand, within UW163_RS19100at 697.176 kb on + strand, within UW163_RS19100at 697.177 kb on - strand, within UW163_RS19100at 697.177 kb on - strand, within UW163_RS19100at 697.177 kb on - strand, within UW163_RS19100at 697.177 kb on - strand, within UW163_RS19100at 697.177 kb on - strand, within UW163_RS19100at 697.177 kb on - strand, within UW163_RS19100at 697.177 kb on - strand, within UW163_RS19100at 697.395 kb on + strand, within UW163_RS19100at 697.548 kb on + strand, within UW163_RS19100at 697.548 kb on + strand, within UW163_RS19100at 697.549 kb on - strand, within UW163_RS19100at 697.549 kb on - strand, within UW163_RS19100at 697.549 kb on - strand, within UW163_RS19100at 697.652 kb on - strandat 697.712 kb on + strandat 697.712 kb on + strandat 697.712 kb on + strandat 697.713 kb on - strandat 697.713 kb on - strandat 697.749 kb on - strandat 697.749 kb on - strandat 697.824 kb on + strand, within UW163_RS19105at 697.824 kb on + strand, within UW163_RS19105at 697.826 kb on + strand, within UW163_RS19105at 697.826 kb on + strand, within UW163_RS19105at 697.826 kb on + strand, within UW163_RS19105at 697.827 kb on - strand, within UW163_RS19105at 697.827 kb on - strand, within UW163_RS19105at 697.827 kb on - strand, within UW163_RS19105at 697.956 kb on - strand, within UW163_RS19105at 697.956 kb on - strand, within UW163_RS19105at 697.956 kb on - strand, within UW163_RS19105at 697.956 kb on - strand, within UW163_RS19105at 698.042 kb on + strand, within UW163_RS19105at 698.042 kb on + strand, within UW163_RS19105at 698.043 kb on - strand, within UW163_RS19105at 698.062 kb on - strand, within UW163_RS19105at 698.126 kb on + strand, within UW163_RS19105at 698.126 kb on + strand, within UW163_RS19105at 698.127 kb on - strand, within UW163_RS19105at 698.150 kb on + strandat 698.150 kb on + strand, within UW163_RS19105at 698.150 kb on + strand, within UW163_RS19105at 698.151 kb on - strand, within UW163_RS19105at 698.151 kb on - strand, within UW163_RS19105at 698.151 kb on - strand, within UW163_RS19105at 698.151 kb on - strand, within UW163_RS19105at 698.235 kb on - strand, within UW163_RS19105at 698.235 kb on - strand, within UW163_RS19105at 698.348 kb on + strand, within UW163_RS19105at 698.349 kb on - strand, within UW163_RS19105at 698.349 kb on - strandat 698.349 kb on - strand, within UW163_RS19105at 698.561 kb on + strand, within UW163_RS19105at 698.561 kb on + strand, within UW163_RS19105at 698.562 kb on - strand, within UW163_RS19105at 698.562 kb on - strand, within UW163_RS19105

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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695,989 + -0.0
695,989 + -0.5
695,989 + +1.3
695,989 + +0.3
695,990 - +1.0
695,999 - -0.2
696,077 - -0.0
696,077 - +0.1
696,298 - UW163_RS19095 0.25 +0.6
696,298 - UW163_RS19095 0.25 +0.4
696,313 - UW163_RS19095 0.27 -1.0
696,364 - UW163_RS19095 0.35 -0.2
696,534 + UW163_RS19095 0.59 -0.6
696,534 + UW163_RS19095 0.59 +0.7
696,535 - UW163_RS19095 0.60 +1.5
696,535 - UW163_RS19095 0.60 -0.0
696,931 - -0.7
696,984 + UW163_RS19100 0.14 -0.0
696,985 - UW163_RS19100 0.14 -0.0
696,985 - UW163_RS19100 0.14 +0.8
697,146 + UW163_RS19100 0.35 -0.1
697,146 + UW163_RS19100 0.35 -0.2
697,176 + UW163_RS19100 0.39 +1.4
697,176 + UW163_RS19100 0.39 +0.2
697,176 + UW163_RS19100 0.39 +0.8
697,176 + UW163_RS19100 0.39 -0.2
697,176 + UW163_RS19100 0.39 -0.0
697,176 + UW163_RS19100 0.39 +0.2
697,177 - UW163_RS19100 0.39 +0.8
697,177 - UW163_RS19100 0.39 -0.6
697,177 - UW163_RS19100 0.39 -0.3
697,177 - UW163_RS19100 0.39 -0.4
697,177 - UW163_RS19100 0.39 -1.0
697,177 - UW163_RS19100 0.39 +0.3
697,177 - UW163_RS19100 0.39 +1.0
697,395 + UW163_RS19100 0.66 +0.0
697,548 + UW163_RS19100 0.86 -0.2
697,548 + UW163_RS19100 0.86 -0.2
697,549 - UW163_RS19100 0.86 +0.3
697,549 - UW163_RS19100 0.86 -0.1
697,549 - UW163_RS19100 0.86 +0.2
697,652 - +0.1
697,712 + -0.6
697,712 + +1.5
697,712 + -0.3
697,713 - +0.6
697,713 - +0.1
697,749 - +2.3
697,749 - -0.6
697,824 + UW163_RS19105 0.12 +0.0
697,824 + UW163_RS19105 0.12 -0.1
697,826 + UW163_RS19105 0.13 -0.4
697,826 + UW163_RS19105 0.13 +0.2
697,826 + UW163_RS19105 0.13 +0.4
697,827 - UW163_RS19105 0.13 -0.1
697,827 - UW163_RS19105 0.13 -0.3
697,827 - UW163_RS19105 0.13 -0.0
697,956 - UW163_RS19105 0.22 -0.4
697,956 - UW163_RS19105 0.22 +1.0
697,956 - UW163_RS19105 0.22 +0.8
697,956 - UW163_RS19105 0.22 -1.0
698,042 + UW163_RS19105 0.29 +0.1
698,042 + UW163_RS19105 0.29 +0.6
698,043 - UW163_RS19105 0.29 -0.4
698,062 - UW163_RS19105 0.30 +0.3
698,126 + UW163_RS19105 0.35 +1.0
698,126 + UW163_RS19105 0.35 +2.4
698,127 - UW163_RS19105 0.35 +0.2
698,150 + +0.5
698,150 + UW163_RS19105 0.37 +0.1
698,150 + UW163_RS19105 0.37 +1.3
698,151 - UW163_RS19105 0.37 +0.1
698,151 - UW163_RS19105 0.37 +1.5
698,151 - UW163_RS19105 0.37 +0.8
698,151 - UW163_RS19105 0.37 +0.2
698,235 - UW163_RS19105 0.43 +0.5
698,235 - UW163_RS19105 0.43 +0.1
698,348 + UW163_RS19105 0.51 +0.2
698,349 - UW163_RS19105 0.51 +1.0
698,349 - -1.0
698,349 - UW163_RS19105 0.51 -0.3
698,561 + UW163_RS19105 0.67 +0.5
698,561 + UW163_RS19105 0.67 +0.6
698,562 - UW163_RS19105 0.67 +0.4
698,562 - UW163_RS19105 0.67 +0.5

Or see this region's nucleotide sequence