Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS16390 and UW163_RS16395 are separated by 22 nucleotides UW163_RS16395 and UW163_RS16400 are separated by 45 nucleotides UW163_RS16400 and UW163_RS16405 are separated by 216 nucleotides
UW163_RS16390: UW163_RS16390 - histidine kinase, at 38,913 to 40,553
_RS16390
UW163_RS16395: UW163_RS16395 - divalent metal cation transporter, at 40,576 to 42,219
_RS16395
UW163_RS16400: UW163_RS16400 - hypothetical protein, at 42,265 to 42,489
_RS16400
UW163_RS16405: UW163_RS16405 - carbohydrate porin, at 42,706 to 44,136
_RS16405
Position (kb) 40
41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 39.621 kb on + strand, within UW163_RS16390 at 39.621 kb on + strand, within UW163_RS16390 at 39.622 kb on - strand, within UW163_RS16390 at 40.213 kb on - strand, within UW163_RS16390 at 40.213 kb on - strand, within UW163_RS16390 at 40.273 kb on - strand, within UW163_RS16390 at 40.273 kb on - strand, within UW163_RS16390 at 40.395 kb on + strand at 40.395 kb on + strand at 40.396 kb on - strand at 40.399 kb on + strand at 40.399 kb on + strand at 40.399 kb on + strand at 40.400 kb on - strand at 40.446 kb on + strand at 40.446 kb on + strand at 40.606 kb on + strand at 40.606 kb on + strand at 40.634 kb on + strand at 40.801 kb on + strand, within UW163_RS16395 at 41.114 kb on + strand, within UW163_RS16395 at 41.123 kb on + strand, within UW163_RS16395 at 41.123 kb on + strand, within UW163_RS16395 at 41.123 kb on + strand, within UW163_RS16395 at 41.124 kb on - strand, within UW163_RS16395 at 41.192 kb on + strand, within UW163_RS16395 at 41.193 kb on - strand, within UW163_RS16395 at 41.193 kb on - strand, within UW163_RS16395 at 41.321 kb on + strand, within UW163_RS16395 at 41.322 kb on - strand, within UW163_RS16395 at 41.468 kb on + strand, within UW163_RS16395 at 41.468 kb on + strand, within UW163_RS16395 at 41.469 kb on - strand, within UW163_RS16395 at 41.759 kb on + strand, within UW163_RS16395 at 41.933 kb on + strand, within UW163_RS16395 at 41.933 kb on + strand, within UW163_RS16395 at 41.980 kb on + strand, within UW163_RS16395 at 41.981 kb on + strand, within UW163_RS16395 at 41.981 kb on + strand, within UW163_RS16395 at 42.000 kb on + strand, within UW163_RS16395 at 42.001 kb on - strand, within UW163_RS16395 at 42.002 kb on + strand, within UW163_RS16395 at 42.002 kb on + strand, within UW163_RS16395 at 42.003 kb on - strand, within UW163_RS16395 at 42.003 kb on - strand, within UW163_RS16395 at 42.219 kb on + strand at 42.219 kb on + strand at 42.638 kb on + strand at 42.638 kb on + strand at 42.638 kb on + strand at 42.638 kb on + strand at 42.638 kb on + strand at 42.638 kb on + strand at 42.639 kb on - strand at 42.639 kb on - strand at 42.639 kb on - strand at 42.684 kb on + strand at 42.830 kb on + strand at 42.830 kb on + strand at 42.831 kb on - strand at 42.831 kb on - strand at 42.831 kb on - strand at 42.845 kb on - strand at 42.845 kb on - strand at 42.860 kb on + strand, within UW163_RS16405 at 42.860 kb on + strand, within UW163_RS16405 at 42.861 kb on - strand, within UW163_RS16405 at 42.861 kb on - strand, within UW163_RS16405 at 42.911 kb on + strand, within UW163_RS16405 at 43.041 kb on - strand, within UW163_RS16405
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 39,621 + UW163_RS16390 0.43 +0.3 39,621 + UW163_RS16390 0.43 -0.1 39,622 - UW163_RS16390 0.43 +0.4 40,213 - UW163_RS16390 0.79 -0.2 40,213 - UW163_RS16390 0.79 +0.3 40,273 - UW163_RS16390 0.83 +0.8 40,273 - UW163_RS16390 0.83 -0.8 40,395 + -0.1 40,395 + -0.3 40,396 - -0.1 40,399 + +0.7 40,399 + +0.2 40,399 + +0.7 40,400 - +0.3 40,446 + -0.0 40,446 + -2.8 40,606 + +0.8 40,606 + +0.2 40,634 + -0.6 40,801 + UW163_RS16395 0.14 -0.3 41,114 + UW163_RS16395 0.33 -0.2 41,123 + UW163_RS16395 0.33 -1.6 41,123 + UW163_RS16395 0.33 -0.7 41,123 + UW163_RS16395 0.33 +0.5 41,124 - UW163_RS16395 0.33 +0.6 41,192 + UW163_RS16395 0.37 +0.4 41,193 - UW163_RS16395 0.38 -0.1 41,193 - UW163_RS16395 0.38 +0.9 41,321 + UW163_RS16395 0.45 +1.0 41,322 - UW163_RS16395 0.45 +0.2 41,468 + UW163_RS16395 0.54 +1.0 41,468 + UW163_RS16395 0.54 -0.1 41,469 - UW163_RS16395 0.54 +0.4 41,759 + UW163_RS16395 0.72 +0.2 41,933 + UW163_RS16395 0.83 -0.1 41,933 + UW163_RS16395 0.83 +1.3 41,980 + UW163_RS16395 0.85 +1.0 41,981 + UW163_RS16395 0.85 -0.5 41,981 + UW163_RS16395 0.85 +0.1 42,000 + UW163_RS16395 0.87 +1.3 42,001 - UW163_RS16395 0.87 +0.6 42,002 + UW163_RS16395 0.87 -0.1 42,002 + UW163_RS16395 0.87 -0.5 42,003 - UW163_RS16395 0.87 +0.2 42,003 - UW163_RS16395 0.87 -0.8 42,219 + -1.8 42,219 + -0.2 42,638 + +0.6 42,638 + -0.8 42,638 + +1.3 42,638 + +0.3 42,638 + +0.7 42,638 + +0.6 42,639 - +0.0 42,639 - +0.2 42,639 - +0.0 42,684 + -0.5 42,830 + -0.3 42,830 + +1.2 42,831 - +0.5 42,831 - -1.4 42,831 - +0.4 42,845 - +1.3 42,845 - -0.2 42,860 + UW163_RS16405 0.11 +0.6 42,860 + UW163_RS16405 0.11 +1.4 42,861 - UW163_RS16405 0.11 +1.1 42,861 - UW163_RS16405 0.11 +0.1 42,911 + UW163_RS16405 0.14 +0.4 43,041 - UW163_RS16405 0.23 +1.2
Or see this region's nucleotide sequence