Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS15975 and UW163_RS15980 are separated by 117 nucleotides UW163_RS15980 and UW163_RS15985 are separated by 78 nucleotides
UW163_RS15975: UW163_RS15975 - deacetylase, at 3,449,993 to 3,450,916
_RS15975
UW163_RS15980: UW163_RS15980 - lytic murein transglycosylase B, at 3,451,034 to 3,452,146
_RS15980
UW163_RS15985: UW163_RS15985 - cysteine synthase CysM, at 3,452,225 to 3,453,127
_RS15985
Position (kb)
3451
3452
3453 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3450.054 kb on + strand at 3450.054 kb on + strand at 3450.284 kb on - strand, within UW163_RS15975 at 3450.285 kb on + strand, within UW163_RS15975 at 3450.286 kb on - strand, within UW163_RS15975 at 3450.339 kb on + strand, within UW163_RS15975 at 3450.346 kb on - strand, within UW163_RS15975 at 3450.645 kb on + strand, within UW163_RS15975 at 3450.645 kb on + strand, within UW163_RS15975 at 3450.646 kb on - strand, within UW163_RS15975 at 3450.646 kb on - strand, within UW163_RS15975 at 3450.646 kb on - strand, within UW163_RS15975 at 3450.727 kb on - strand, within UW163_RS15975 at 3450.900 kb on + strand at 3450.901 kb on - strand at 3451.002 kb on + strand at 3451.002 kb on + strand at 3451.002 kb on + strand at 3451.114 kb on + strand at 3451.114 kb on + strand at 3451.187 kb on + strand, within UW163_RS15980 at 3451.353 kb on - strand, within UW163_RS15980 at 3451.353 kb on - strand, within UW163_RS15980 at 3451.413 kb on - strand, within UW163_RS15980 at 3451.497 kb on - strand, within UW163_RS15980 at 3451.497 kb on - strand, within UW163_RS15980 at 3451.721 kb on + strand, within UW163_RS15980 at 3451.721 kb on + strand, within UW163_RS15980 at 3452.072 kb on + strand at 3452.080 kb on + strand at 3452.080 kb on + strand at 3452.080 kb on + strand at 3452.105 kb on + strand at 3452.105 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 3,450,054 + -0.9 3,450,054 + -0.4 3,450,284 - UW163_RS15975 0.31 +0.3 3,450,285 + UW163_RS15975 0.32 -3.2 3,450,286 - UW163_RS15975 0.32 +0.9 3,450,339 + UW163_RS15975 0.37 +1.3 3,450,346 - UW163_RS15975 0.38 +0.8 3,450,645 + UW163_RS15975 0.71 +0.2 3,450,645 + UW163_RS15975 0.71 -0.8 3,450,646 - UW163_RS15975 0.71 +0.5 3,450,646 - UW163_RS15975 0.71 -0.9 3,450,646 - UW163_RS15975 0.71 +0.1 3,450,727 - UW163_RS15975 0.79 +0.2 3,450,900 + -0.8 3,450,901 - -0.0 3,451,002 + +0.1 3,451,002 + -0.4 3,451,002 + +2.4 3,451,114 + -1.2 3,451,114 + +1.8 3,451,187 + UW163_RS15980 0.14 +1.4 3,451,353 - UW163_RS15980 0.29 -0.2 3,451,353 - UW163_RS15980 0.29 +1.0 3,451,413 - UW163_RS15980 0.34 +0.5 3,451,497 - UW163_RS15980 0.42 -1.8 3,451,497 - UW163_RS15980 0.42 +1.0 3,451,721 + UW163_RS15980 0.62 -0.8 3,451,721 + UW163_RS15980 0.62 -0.9 3,452,072 + +0.2 3,452,080 + +0.0 3,452,080 + +0.1 3,452,080 + +0.4 3,452,105 + +0.3 3,452,105 + -1.7
Or see this region's nucleotide sequence