Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS15980

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS15975 and UW163_RS15980 are separated by 117 nucleotidesUW163_RS15980 and UW163_RS15985 are separated by 78 nucleotides UW163_RS15975: UW163_RS15975 - deacetylase, at 3,449,993 to 3,450,916 _RS15975 UW163_RS15980: UW163_RS15980 - lytic murein transglycosylase B, at 3,451,034 to 3,452,146 _RS15980 UW163_RS15985: UW163_RS15985 - cysteine synthase CysM, at 3,452,225 to 3,453,127 _RS15985 Position (kb) 3451 3452 3453Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3450.054 kb on + strandat 3450.054 kb on + strandat 3450.284 kb on - strand, within UW163_RS15975at 3450.285 kb on + strand, within UW163_RS15975at 3450.286 kb on - strand, within UW163_RS15975at 3450.339 kb on + strand, within UW163_RS15975at 3450.346 kb on - strand, within UW163_RS15975at 3450.645 kb on + strand, within UW163_RS15975at 3450.645 kb on + strand, within UW163_RS15975at 3450.646 kb on - strand, within UW163_RS15975at 3450.646 kb on - strand, within UW163_RS15975at 3450.646 kb on - strand, within UW163_RS15975at 3450.727 kb on - strand, within UW163_RS15975at 3450.900 kb on + strandat 3450.901 kb on - strandat 3451.002 kb on + strandat 3451.002 kb on + strandat 3451.002 kb on + strandat 3451.114 kb on + strandat 3451.114 kb on + strandat 3451.187 kb on + strand, within UW163_RS15980at 3451.353 kb on - strand, within UW163_RS15980at 3451.353 kb on - strand, within UW163_RS15980at 3451.413 kb on - strand, within UW163_RS15980at 3451.497 kb on - strand, within UW163_RS15980at 3451.497 kb on - strand, within UW163_RS15980at 3451.721 kb on + strand, within UW163_RS15980at 3451.721 kb on + strand, within UW163_RS15980at 3452.072 kb on + strandat 3452.080 kb on + strandat 3452.080 kb on + strandat 3452.080 kb on + strandat 3452.105 kb on + strandat 3452.105 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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3,450,054 + -0.9
3,450,054 + -0.4
3,450,284 - UW163_RS15975 0.31 +0.3
3,450,285 + UW163_RS15975 0.32 -3.2
3,450,286 - UW163_RS15975 0.32 +0.9
3,450,339 + UW163_RS15975 0.37 +1.3
3,450,346 - UW163_RS15975 0.38 +0.8
3,450,645 + UW163_RS15975 0.71 +0.2
3,450,645 + UW163_RS15975 0.71 -0.8
3,450,646 - UW163_RS15975 0.71 +0.5
3,450,646 - UW163_RS15975 0.71 -0.9
3,450,646 - UW163_RS15975 0.71 +0.1
3,450,727 - UW163_RS15975 0.79 +0.2
3,450,900 + -0.8
3,450,901 - -0.0
3,451,002 + +0.1
3,451,002 + -0.4
3,451,002 + +2.4
3,451,114 + -1.2
3,451,114 + +1.8
3,451,187 + UW163_RS15980 0.14 +1.4
3,451,353 - UW163_RS15980 0.29 -0.2
3,451,353 - UW163_RS15980 0.29 +1.0
3,451,413 - UW163_RS15980 0.34 +0.5
3,451,497 - UW163_RS15980 0.42 -1.8
3,451,497 - UW163_RS15980 0.42 +1.0
3,451,721 + UW163_RS15980 0.62 -0.8
3,451,721 + UW163_RS15980 0.62 -0.9
3,452,072 + +0.2
3,452,080 + +0.0
3,452,080 + +0.1
3,452,080 + +0.4
3,452,105 + +0.3
3,452,105 + -1.7

Or see this region's nucleotide sequence