Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS14665

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS14655 and UW163_RS14660 are separated by 165 nucleotidesUW163_RS14660 and UW163_RS14665 are separated by 29 nucleotidesUW163_RS14665 and UW163_RS14670 are separated by 246 nucleotides UW163_RS14655: UW163_RS14655 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 3,160,543 to 3,161,817 _RS14655 UW163_RS14660: UW163_RS14660 - ATP-dependent Clp protease proteolytic subunit, at 3,161,983 to 3,162,636 _RS14660 UW163_RS14665: UW163_RS14665 - trigger factor, at 3,162,666 to 3,164,015 _RS14665 UW163_RS14670: UW163_RS14670 - bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC, at 3,164,262 to 3,166,268 _RS14670 Position (kb) 3162 3163 3164 3165Strain fitness (log2 ratio) -2 -1 0 1 2at 3162.812 kb on - strand, within UW163_RS14665at 3162.842 kb on - strand, within UW163_RS14665at 3163.678 kb on + strand, within UW163_RS14665at 3164.021 kb on + strandat 3164.133 kb on - strandat 3164.187 kb on - strandat 3164.187 kb on - strandat 3164.190 kb on - strandat 3164.190 kb on - strandat 3164.780 kb on - strand, within UW163_RS14670at 3164.780 kb on - strand, within UW163_RS14670

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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3,162,812 - UW163_RS14665 0.11 -2.0
3,162,842 - UW163_RS14665 0.13 -0.1
3,163,678 + UW163_RS14665 0.75 +0.2
3,164,021 + -0.1
3,164,133 - -0.5
3,164,187 - +0.6
3,164,187 - +2.5
3,164,190 - -0.4
3,164,190 - +0.6
3,164,780 - UW163_RS14670 0.26 -0.8
3,164,780 - UW163_RS14670 0.26 -0.8

Or see this region's nucleotide sequence