Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS12905

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS12900 and UW163_RS12905 are separated by 55 nucleotidesUW163_RS12905 and UW163_RS12910 are separated by 77 nucleotides UW163_RS12900: UW163_RS12900 - rhizopine-binding protein, at 2,765,067 to 2,765,984 _RS12900 UW163_RS12905: UW163_RS12905 - sugar ABC transporter ATP-binding protein, at 2,766,040 to 2,767,599 _RS12905 UW163_RS12910: UW163_RS12910 - ABC transporter permease, at 2,767,677 to 2,768,699 _RS12910 Position (kb) 2766 2767 2768Strain fitness (log2 ratio) -1 0 1at 2765.141 kb on - strandat 2765.475 kb on + strand, within UW163_RS12900at 2765.961 kb on + strandat 2765.962 kb on - strandat 2765.983 kb on - strandat 2766.260 kb on - strand, within UW163_RS12905at 2766.283 kb on + strand, within UW163_RS12905at 2766.283 kb on + strandat 2766.685 kb on + strand, within UW163_RS12905at 2766.754 kb on + strand, within UW163_RS12905at 2767.662 kb on + strandat 2767.663 kb on - strandat 2768.013 kb on + strand, within UW163_RS12910at 2768.179 kb on - strand, within UW163_RS12910at 2768.179 kb on - strand, within UW163_RS12910at 2768.217 kb on + strand, within UW163_RS12910at 2768.218 kb on - strand, within UW163_RS12910at 2768.391 kb on + strand, within UW163_RS12910

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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2,765,141 - +0.1
2,765,475 + UW163_RS12900 0.44 +0.3
2,765,961 + -0.9
2,765,962 - +0.3
2,765,983 - +0.3
2,766,260 - UW163_RS12905 0.14 -0.3
2,766,283 + UW163_RS12905 0.16 +0.2
2,766,283 + +0.5
2,766,685 + UW163_RS12905 0.41 -0.2
2,766,754 + UW163_RS12905 0.46 +0.2
2,767,662 + +0.5
2,767,663 - +0.1
2,768,013 + UW163_RS12910 0.33 +1.2
2,768,179 - UW163_RS12910 0.49 +0.7
2,768,179 - UW163_RS12910 0.49 +0.2
2,768,217 + UW163_RS12910 0.53 -0.5
2,768,218 - UW163_RS12910 0.53 +0.4
2,768,391 + UW163_RS12910 0.70 +1.2

Or see this region's nucleotide sequence