Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS09985

Experiment: M63_quarter_strength

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntUW163_RS09980 and UW163_RS09985 are separated by 114 nucleotidesUW163_RS09985 and UW163_RS09990 are separated by 40 nucleotides UW163_RS09980: UW163_RS09980 - NAD(P)/FAD-dependent oxidoreductase, at 2,163,856 to 2,165,094 _RS09980 UW163_RS09985: UW163_RS09985 - GatB/YqeY domain-containing protein, at 2,165,209 to 2,165,658 _RS09985 UW163_RS09990: UW163_RS09990 - DNA primase, at 2,165,699 to 2,167,510 _RS09990 Position (kb) 2165 2166Strain fitness (log2 ratio) -1 0 1at 2164.935 kb on + strand, within UW163_RS09980

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
remove
2,164,935 + UW163_RS09980 0.87 +0.3

Or see this region's nucleotide sequence