Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS08960

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS08945 and UW163_RS08950 are separated by 165 nucleotidesUW163_RS08950 and UW163_RS08955 are separated by 13 nucleotidesUW163_RS08955 and UW163_RS08960 are separated by 173 nucleotidesUW163_RS08960 and UW163_RS08965 are separated by 122 nucleotidesUW163_RS08965 and UW163_RS08970 overlap by 1 nucleotides UW163_RS08945: UW163_RS08945 - L-aspartate oxidase, at 1,926,309 to 1,927,910 _RS08945 UW163_RS08950: UW163_RS08950 - 50S ribosomal protein L33, at 1,928,076 to 1,928,246 _RS08950 UW163_RS08955: UW163_RS08955 - 50S ribosomal protein L28, at 1,928,260 to 1,928,493 _RS08955 UW163_RS08960: UW163_RS08960 - JAB domain-containing protein, at 1,928,667 to 1,929,341 _RS08960 UW163_RS08965: UW163_RS08965 - peptidylprolyl isomerase, at 1,929,464 to 1,929,943 _RS08965 UW163_RS08970: UW163_RS08970 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 1,929,943 to 1,930,917 _RS08970 Position (kb) 1928 1929 1930Strain fitness (log2 ratio) -1 0 1at 1927.675 kb on + strand, within UW163_RS08945at 1927.675 kb on + strand, within UW163_RS08945at 1927.985 kb on - strandat 1927.985 kb on - strandat 1928.098 kb on + strand, within UW163_RS08950at 1928.098 kb on + strand, within UW163_RS08950at 1928.098 kb on + strand, within UW163_RS08950at 1928.763 kb on + strand, within UW163_RS08960at 1928.763 kb on + strand, within UW163_RS08960at 1928.764 kb on - strand, within UW163_RS08960at 1928.764 kb on - strand, within UW163_RS08960at 1928.764 kb on - strand, within UW163_RS08960at 1929.106 kb on + strand, within UW163_RS08960at 1929.106 kb on + strand, within UW163_RS08960at 1929.107 kb on - strand, within UW163_RS08960at 1929.415 kb on - strandat 1929.426 kb on + strandat 1929.426 kb on + strandat 1929.427 kb on - strandat 1929.427 kb on - strandat 1929.427 kb on - strandat 1929.427 kb on - strandat 1929.833 kb on + strandat 1929.833 kb on + strand, within UW163_RS08965

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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1,927,675 + UW163_RS08945 0.85 +0.9
1,927,675 + UW163_RS08945 0.85 -0.8
1,927,985 - +0.8
1,927,985 - +0.8
1,928,098 + UW163_RS08950 0.13 -0.9
1,928,098 + UW163_RS08950 0.13 -0.7
1,928,098 + UW163_RS08950 0.13 -0.6
1,928,763 + UW163_RS08960 0.14 +0.1
1,928,763 + UW163_RS08960 0.14 +0.2
1,928,764 - UW163_RS08960 0.14 +0.8
1,928,764 - UW163_RS08960 0.14 -0.2
1,928,764 - UW163_RS08960 0.14 -0.4
1,929,106 + UW163_RS08960 0.65 -0.2
1,929,106 + UW163_RS08960 0.65 -0.5
1,929,107 - UW163_RS08960 0.65 +0.2
1,929,415 - -1.0
1,929,426 + -0.2
1,929,426 + +1.0
1,929,427 - -0.2
1,929,427 - -0.0
1,929,427 - +0.3
1,929,427 - +0.7
1,929,833 + +0.8
1,929,833 + UW163_RS08965 0.77 +0.1

Or see this region's nucleotide sequence