Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS08520

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS08515 and UW163_RS08520 are separated by 70 nucleotidesUW163_RS08520 and UW163_RS08525 are separated by 108 nucleotides UW163_RS08515: UW163_RS08515 - N-acetylmuramoyl-L-alanine amidase, at 1,836,185 to 1,837,711 _RS08515 UW163_RS08520: UW163_RS08520 - bile acid:sodium symporter, at 1,837,782 to 1,838,813 _RS08520 UW163_RS08525: UW163_RS08525 - LysR family transcriptional regulator, at 1,838,922 to 1,839,815 _RS08525 Position (kb) 1837 1838 1839Strain fitness (log2 ratio) -2 -1 0 1at 1837.668 kb on - strandat 1837.888 kb on + strand, within UW163_RS08520at 1837.888 kb on + strand, within UW163_RS08520at 1837.889 kb on - strand, within UW163_RS08520at 1837.889 kb on - strand, within UW163_RS08520at 1837.889 kb on - strand, within UW163_RS08520at 1838.129 kb on - strand, within UW163_RS08520at 1838.208 kb on - strand, within UW163_RS08520at 1838.208 kb on - strand, within UW163_RS08520at 1838.235 kb on - strand, within UW163_RS08520at 1838.235 kb on - strand, within UW163_RS08520at 1838.491 kb on + strand, within UW163_RS08520at 1838.491 kb on + strand, within UW163_RS08520at 1838.491 kb on + strand, within UW163_RS08520at 1838.883 kb on + strandat 1838.883 kb on + strandat 1838.910 kb on + strandat 1838.911 kb on - strandat 1839.252 kb on + strand, within UW163_RS08525at 1839.252 kb on + strandat 1839.253 kb on - strand, within UW163_RS08525at 1839.253 kb on - strand, within UW163_RS08525at 1839.702 kb on - strand, within UW163_RS08525

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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1,837,668 - -0.0
1,837,888 + UW163_RS08520 0.10 +0.7
1,837,888 + UW163_RS08520 0.10 +0.1
1,837,889 - UW163_RS08520 0.10 -0.3
1,837,889 - UW163_RS08520 0.10 -0.6
1,837,889 - UW163_RS08520 0.10 +0.8
1,838,129 - UW163_RS08520 0.34 -0.4
1,838,208 - UW163_RS08520 0.41 -0.2
1,838,208 - UW163_RS08520 0.41 +0.2
1,838,235 - UW163_RS08520 0.44 -0.7
1,838,235 - UW163_RS08520 0.44 +0.2
1,838,491 + UW163_RS08520 0.69 +0.9
1,838,491 + UW163_RS08520 0.69 +0.2
1,838,491 + UW163_RS08520 0.69 -1.8
1,838,883 + -0.8
1,838,883 + +0.4
1,838,910 + +0.3
1,838,911 - +0.1
1,839,252 + UW163_RS08525 0.37 +1.4
1,839,252 + -1.2
1,839,253 - UW163_RS08525 0.37 -0.5
1,839,253 - UW163_RS08525 0.37 +0.7
1,839,702 - UW163_RS08525 0.87 +0.2

Or see this region's nucleotide sequence