Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS08040 and UW163_RS08045 are separated by 8 nucleotides UW163_RS08045 and UW163_RS08050 are separated by 33 nucleotides UW163_RS08050 and UW163_RS08055 are separated by 121 nucleotides
UW163_RS08040: UW163_RS08040 - hypothetical protein, at 1,738,206 to 1,738,484
_RS08040
UW163_RS08045: UW163_RS08045 - pyrroline-5-carboxylate reductase, at 1,738,493 to 1,739,317
_RS08045
UW163_RS08050: UW163_RS08050 - YggS family pyridoxal phosphate-dependent enzyme, at 1,739,351 to 1,740,073
_RS08050
UW163_RS08055: UW163_RS08055 - type IV pili twitching motility protein PilT, at 1,740,195 to 1,741,238
_RS08055
Position (kb)
1739
1740
1741 Strain fitness (log2 ratio)
-1
0
1 at 1739.330 kb on + strand at 1739.371 kb on - strand at 1739.468 kb on - strand, within UW163_RS08050 at 1739.901 kb on + strand, within UW163_RS08050 at 1739.901 kb on + strand, within UW163_RS08050 at 1739.901 kb on + strand, within UW163_RS08050 at 1739.901 kb on + strand, within UW163_RS08050 at 1739.902 kb on - strand, within UW163_RS08050 at 1739.902 kb on - strand, within UW163_RS08050 at 1739.902 kb on - strand, within UW163_RS08050 at 1739.902 kb on - strand, within UW163_RS08050 at 1739.902 kb on - strand, within UW163_RS08050 at 1739.902 kb on - strand, within UW163_RS08050 at 1740.073 kb on + strand at 1740.074 kb on - strand at 1740.171 kb on + strand at 1740.171 kb on + strand at 1740.171 kb on + strand at 1740.172 kb on - strand at 1740.172 kb on - strand at 1740.172 kb on - strand at 1740.191 kb on - strand at 1740.192 kb on + strand at 1740.192 kb on + strand at 1740.302 kb on + strand, within UW163_RS08055 at 1740.302 kb on + strand, within UW163_RS08055 at 1740.349 kb on - strand, within UW163_RS08055 at 1740.349 kb on - strand, within UW163_RS08055 at 1740.349 kb on - strand, within UW163_RS08055 at 1740.349 kb on - strand, within UW163_RS08055 at 1740.349 kb on - strand at 1740.381 kb on + strand, within UW163_RS08055 at 1740.381 kb on + strand, within UW163_RS08055 at 1740.382 kb on - strand, within UW163_RS08055 at 1740.453 kb on - strand, within UW163_RS08055 at 1740.738 kb on - strand, within UW163_RS08055 at 1740.872 kb on + strand, within UW163_RS08055 at 1740.873 kb on - strand, within UW163_RS08055
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 1,739,330 + -0.2 1,739,371 - +0.5 1,739,468 - UW163_RS08050 0.16 -0.2 1,739,901 + UW163_RS08050 0.76 +0.1 1,739,901 + UW163_RS08050 0.76 -0.9 1,739,901 + UW163_RS08050 0.76 +0.7 1,739,901 + UW163_RS08050 0.76 +0.3 1,739,902 - UW163_RS08050 0.76 +1.2 1,739,902 - UW163_RS08050 0.76 +0.1 1,739,902 - UW163_RS08050 0.76 -0.2 1,739,902 - UW163_RS08050 0.76 -0.2 1,739,902 - UW163_RS08050 0.76 +0.3 1,739,902 - UW163_RS08050 0.76 +1.4 1,740,073 + +0.3 1,740,074 - -0.7 1,740,171 + +0.3 1,740,171 + +0.8 1,740,171 + +0.5 1,740,172 - +0.2 1,740,172 - +0.3 1,740,172 - +1.2 1,740,191 - +0.1 1,740,192 + +0.6 1,740,192 + +0.3 1,740,302 + UW163_RS08055 0.10 -0.2 1,740,302 + UW163_RS08055 0.10 -0.2 1,740,349 - UW163_RS08055 0.15 -0.4 1,740,349 - UW163_RS08055 0.15 +0.1 1,740,349 - UW163_RS08055 0.15 +1.0 1,740,349 - UW163_RS08055 0.15 -0.7 1,740,349 - -1.2 1,740,381 + UW163_RS08055 0.18 +0.6 1,740,381 + UW163_RS08055 0.18 +0.3 1,740,382 - UW163_RS08055 0.18 -0.2 1,740,453 - UW163_RS08055 0.25 -0.0 1,740,738 - UW163_RS08055 0.52 +0.4 1,740,872 + UW163_RS08055 0.65 +1.6 1,740,873 - UW163_RS08055 0.65 +0.1
Or see this region's nucleotide sequence