Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS08050

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS08040 and UW163_RS08045 are separated by 8 nucleotidesUW163_RS08045 and UW163_RS08050 are separated by 33 nucleotidesUW163_RS08050 and UW163_RS08055 are separated by 121 nucleotides UW163_RS08040: UW163_RS08040 - hypothetical protein, at 1,738,206 to 1,738,484 _RS08040 UW163_RS08045: UW163_RS08045 - pyrroline-5-carboxylate reductase, at 1,738,493 to 1,739,317 _RS08045 UW163_RS08050: UW163_RS08050 - YggS family pyridoxal phosphate-dependent enzyme, at 1,739,351 to 1,740,073 _RS08050 UW163_RS08055: UW163_RS08055 - type IV pili twitching motility protein PilT, at 1,740,195 to 1,741,238 _RS08055 Position (kb) 1739 1740 1741Strain fitness (log2 ratio) -1 0 1at 1739.330 kb on + strandat 1739.371 kb on - strandat 1739.468 kb on - strand, within UW163_RS08050at 1739.901 kb on + strand, within UW163_RS08050at 1739.901 kb on + strand, within UW163_RS08050at 1739.901 kb on + strand, within UW163_RS08050at 1739.901 kb on + strand, within UW163_RS08050at 1739.902 kb on - strand, within UW163_RS08050at 1739.902 kb on - strand, within UW163_RS08050at 1739.902 kb on - strand, within UW163_RS08050at 1739.902 kb on - strand, within UW163_RS08050at 1739.902 kb on - strand, within UW163_RS08050at 1739.902 kb on - strand, within UW163_RS08050at 1740.073 kb on + strandat 1740.074 kb on - strandat 1740.171 kb on + strandat 1740.171 kb on + strandat 1740.171 kb on + strandat 1740.172 kb on - strandat 1740.172 kb on - strandat 1740.172 kb on - strandat 1740.191 kb on - strandat 1740.192 kb on + strandat 1740.192 kb on + strandat 1740.302 kb on + strand, within UW163_RS08055at 1740.302 kb on + strand, within UW163_RS08055at 1740.349 kb on - strand, within UW163_RS08055at 1740.349 kb on - strand, within UW163_RS08055at 1740.349 kb on - strand, within UW163_RS08055at 1740.349 kb on - strand, within UW163_RS08055at 1740.349 kb on - strandat 1740.381 kb on + strand, within UW163_RS08055at 1740.381 kb on + strand, within UW163_RS08055at 1740.382 kb on - strand, within UW163_RS08055at 1740.453 kb on - strand, within UW163_RS08055at 1740.738 kb on - strand, within UW163_RS08055at 1740.872 kb on + strand, within UW163_RS08055at 1740.873 kb on - strand, within UW163_RS08055

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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1,739,330 + -0.2
1,739,371 - +0.5
1,739,468 - UW163_RS08050 0.16 -0.2
1,739,901 + UW163_RS08050 0.76 +0.1
1,739,901 + UW163_RS08050 0.76 -0.9
1,739,901 + UW163_RS08050 0.76 +0.7
1,739,901 + UW163_RS08050 0.76 +0.3
1,739,902 - UW163_RS08050 0.76 +1.2
1,739,902 - UW163_RS08050 0.76 +0.1
1,739,902 - UW163_RS08050 0.76 -0.2
1,739,902 - UW163_RS08050 0.76 -0.2
1,739,902 - UW163_RS08050 0.76 +0.3
1,739,902 - UW163_RS08050 0.76 +1.4
1,740,073 + +0.3
1,740,074 - -0.7
1,740,171 + +0.3
1,740,171 + +0.8
1,740,171 + +0.5
1,740,172 - +0.2
1,740,172 - +0.3
1,740,172 - +1.2
1,740,191 - +0.1
1,740,192 + +0.6
1,740,192 + +0.3
1,740,302 + UW163_RS08055 0.10 -0.2
1,740,302 + UW163_RS08055 0.10 -0.2
1,740,349 - UW163_RS08055 0.15 -0.4
1,740,349 - UW163_RS08055 0.15 +0.1
1,740,349 - UW163_RS08055 0.15 +1.0
1,740,349 - UW163_RS08055 0.15 -0.7
1,740,349 - -1.2
1,740,381 + UW163_RS08055 0.18 +0.6
1,740,381 + UW163_RS08055 0.18 +0.3
1,740,382 - UW163_RS08055 0.18 -0.2
1,740,453 - UW163_RS08055 0.25 -0.0
1,740,738 - UW163_RS08055 0.52 +0.4
1,740,872 + UW163_RS08055 0.65 +1.6
1,740,873 - UW163_RS08055 0.65 +0.1

Or see this region's nucleotide sequence