Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS05590

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS05585 and UW163_RS05590 overlap by 4 nucleotidesUW163_RS05590 and UW163_RS05595 are separated by 170 nucleotides UW163_RS05585: UW163_RS05585 - glycosyl transferase family 8, at 1,192,588 to 1,193,751 _RS05585 UW163_RS05590: UW163_RS05590 - hypothetical protein, at 1,193,748 to 1,195,850 _RS05590 UW163_RS05595: UW163_RS05595 - hemagglutinin, at 1,196,021 to 1,199,047 _RS05595 Position (kb) 1193 1194 1195 1196Strain fitness (log2 ratio) -2 -1 0 1at 1193.102 kb on + strand, within UW163_RS05585at 1193.102 kb on + strand, within UW163_RS05585at 1193.102 kb on + strand, within UW163_RS05585at 1193.103 kb on - strand, within UW163_RS05585at 1193.103 kb on - strand, within UW163_RS05585at 1193.103 kb on - strand, within UW163_RS05585at 1193.226 kb on + strand, within UW163_RS05585at 1193.441 kb on + strand, within UW163_RS05585at 1193.447 kb on + strand, within UW163_RS05585at 1193.448 kb on - strand, within UW163_RS05585at 1193.453 kb on + strand, within UW163_RS05585at 1193.453 kb on + strand, within UW163_RS05585at 1193.454 kb on - strand, within UW163_RS05585at 1193.454 kb on - strand, within UW163_RS05585at 1193.454 kb on - strand, within UW163_RS05585at 1193.791 kb on + strandat 1193.791 kb on + strandat 1193.792 kb on - strandat 1193.800 kb on + strandat 1193.800 kb on + strandat 1193.830 kb on + strandat 1193.830 kb on + strandat 1193.831 kb on - strandat 1193.831 kb on - strandat 1193.831 kb on - strandat 1193.865 kb on - strandat 1193.977 kb on + strand, within UW163_RS05590at 1193.977 kb on + strand, within UW163_RS05590at 1193.978 kb on - strand, within UW163_RS05590at 1193.978 kb on - strand, within UW163_RS05590at 1193.978 kb on - strand, within UW163_RS05590at 1194.040 kb on + strand, within UW163_RS05590at 1194.040 kb on + strand, within UW163_RS05590at 1194.041 kb on - strand, within UW163_RS05590at 1194.041 kb on - strand, within UW163_RS05590at 1194.041 kb on - strand, within UW163_RS05590at 1194.041 kb on - strand, within UW163_RS05590at 1194.041 kb on - strand, within UW163_RS05590at 1194.041 kb on - strand, within UW163_RS05590at 1194.049 kb on + strand, within UW163_RS05590at 1194.050 kb on - strand, within UW163_RS05590at 1194.076 kb on + strand, within UW163_RS05590at 1194.076 kb on - strand, within UW163_RS05590at 1194.110 kb on + strand, within UW163_RS05590at 1194.111 kb on - strand, within UW163_RS05590at 1194.111 kb on - strand, within UW163_RS05590at 1194.111 kb on - strand, within UW163_RS05590at 1194.113 kb on - strand, within UW163_RS05590at 1194.128 kb on + strand, within UW163_RS05590at 1194.129 kb on - strand, within UW163_RS05590at 1194.196 kb on + strand, within UW163_RS05590at 1194.197 kb on - strand, within UW163_RS05590at 1194.268 kb on + strand, within UW163_RS05590at 1194.268 kb on + strand, within UW163_RS05590at 1194.268 kb on + strand, within UW163_RS05590at 1194.269 kb on - strand, within UW163_RS05590at 1194.269 kb on - strand, within UW163_RS05590at 1194.269 kb on - strand, within UW163_RS05590at 1194.411 kb on + strand, within UW163_RS05590at 1194.411 kb on + strand, within UW163_RS05590at 1194.412 kb on - strand, within UW163_RS05590at 1194.568 kb on + strand, within UW163_RS05590at 1194.568 kb on + strand, within UW163_RS05590at 1194.568 kb on + strand, within UW163_RS05590at 1194.568 kb on + strand, within UW163_RS05590at 1194.568 kb on + strand, within UW163_RS05590at 1194.569 kb on - strand, within UW163_RS05590at 1194.569 kb on - strand, within UW163_RS05590at 1194.569 kb on - strand, within UW163_RS05590at 1194.569 kb on - strand, within UW163_RS05590at 1194.569 kb on - strand, within UW163_RS05590at 1194.569 kb on - strand, within UW163_RS05590at 1194.572 kb on + strand, within UW163_RS05590at 1194.572 kb on + strand, within UW163_RS05590at 1194.573 kb on - strand, within UW163_RS05590at 1194.573 kb on - strand, within UW163_RS05590at 1194.573 kb on - strand, within UW163_RS05590at 1194.573 kb on - strand, within UW163_RS05590at 1194.573 kb on - strand, within UW163_RS05590at 1194.573 kb on - strand, within UW163_RS05590at 1194.573 kb on - strand, within UW163_RS05590at 1194.647 kb on - strand, within UW163_RS05590at 1195.192 kb on + strand, within UW163_RS05590at 1195.193 kb on - strand, within UW163_RS05590at 1195.258 kb on - strand, within UW163_RS05590at 1195.306 kb on + strand, within UW163_RS05590at 1195.307 kb on - strand, within UW163_RS05590at 1195.336 kb on + strand, within UW163_RS05590at 1195.380 kb on - strand, within UW163_RS05590at 1195.380 kb on - strand, within UW163_RS05590at 1195.579 kb on + strand, within UW163_RS05590at 1195.579 kb on + strand, within UW163_RS05590at 1195.580 kb on - strand, within UW163_RS05590at 1195.580 kb on - strand, within UW163_RS05590at 1195.580 kb on - strand, within UW163_RS05590at 1195.580 kb on - strand, within UW163_RS05590at 1195.580 kb on - strand, within UW163_RS05590at 1195.603 kb on + strand, within UW163_RS05590at 1195.603 kb on + strand, within UW163_RS05590at 1195.603 kb on + strand, within UW163_RS05590at 1195.603 kb on + strand, within UW163_RS05590at 1195.893 kb on + strandat 1195.893 kb on + strandat 1195.893 kb on + strandat 1195.893 kb on + strandat 1195.894 kb on - strandat 1195.894 kb on - strandat 1195.894 kb on - strandat 1195.894 kb on - strandat 1195.895 kb on + strandat 1195.895 kb on + strandat 1195.896 kb on - strandat 1195.896 kb on - strandat 1196.064 kb on + strandat 1196.065 kb on - strandat 1196.065 kb on - strandat 1196.088 kb on + strandat 1196.088 kb on + strandat 1196.089 kb on - strandat 1196.247 kb on + strandat 1196.247 kb on + strandat 1196.247 kb on + strandat 1196.247 kb on + strandat 1196.248 kb on - strandat 1196.248 kb on - strandat 1196.398 kb on + strand, within UW163_RS05595at 1196.400 kb on + strand, within UW163_RS05595at 1196.400 kb on + strand, within UW163_RS05595at 1196.401 kb on - strand, within UW163_RS05595at 1196.418 kb on + strand, within UW163_RS05595at 1196.418 kb on + strand, within UW163_RS05595at 1196.418 kb on + strand, within UW163_RS05595at 1196.419 kb on - strand, within UW163_RS05595at 1196.419 kb on - strand, within UW163_RS05595at 1196.419 kb on - strand, within UW163_RS05595at 1196.419 kb on - strand, within UW163_RS05595at 1196.419 kb on - strand, within UW163_RS05595at 1196.424 kb on + strand, within UW163_RS05595at 1196.424 kb on + strand, within UW163_RS05595at 1196.424 kb on + strand, within UW163_RS05595at 1196.425 kb on - strand, within UW163_RS05595at 1196.425 kb on - strand, within UW163_RS05595at 1196.425 kb on - strand, within UW163_RS05595at 1196.425 kb on - strand, within UW163_RS05595at 1196.425 kb on - strand, within UW163_RS05595at 1196.425 kb on - strand, within UW163_RS05595at 1196.425 kb on - strand, within UW163_RS05595at 1196.425 kb on - strand, within UW163_RS05595at 1196.425 kb on - strand, within UW163_RS05595at 1196.425 kb on - strand, within UW163_RS05595at 1196.425 kb on - strand, within UW163_RS05595at 1196.499 kb on + strand, within UW163_RS05595at 1196.499 kb on + strand, within UW163_RS05595at 1196.499 kb on + strand, within UW163_RS05595at 1196.499 kb on + strand, within UW163_RS05595at 1196.500 kb on - strand, within UW163_RS05595at 1196.607 kb on + strand, within UW163_RS05595at 1196.607 kb on + strand, within UW163_RS05595at 1196.607 kb on + strand, within UW163_RS05595at 1196.608 kb on - strand, within UW163_RS05595at 1196.608 kb on - strand, within UW163_RS05595at 1196.608 kb on - strand, within UW163_RS05595at 1196.623 kb on + strand, within UW163_RS05595at 1196.626 kb on - strand, within UW163_RS05595at 1196.626 kb on - strand, within UW163_RS05595at 1196.650 kb on - strand, within UW163_RS05595at 1196.680 kb on + strand, within UW163_RS05595at 1196.712 kb on + strand, within UW163_RS05595at 1196.712 kb on + strand, within UW163_RS05595at 1196.712 kb on + strand, within UW163_RS05595at 1196.713 kb on - strand, within UW163_RS05595

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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1,193,102 + UW163_RS05585 0.44 +0.9
1,193,102 + UW163_RS05585 0.44 +1.0
1,193,102 + UW163_RS05585 0.44 -0.2
1,193,103 - UW163_RS05585 0.44 +0.0
1,193,103 - UW163_RS05585 0.44 -2.2
1,193,103 - UW163_RS05585 0.44 -0.3
1,193,226 + UW163_RS05585 0.55 +0.0
1,193,441 + UW163_RS05585 0.73 +0.5
1,193,447 + UW163_RS05585 0.74 -0.2
1,193,448 - UW163_RS05585 0.74 -0.4
1,193,453 + UW163_RS05585 0.74 +1.0
1,193,453 + UW163_RS05585 0.74 +0.3
1,193,454 - UW163_RS05585 0.74 -0.5
1,193,454 - UW163_RS05585 0.74 +0.7
1,193,454 - UW163_RS05585 0.74 -0.0
1,193,791 + -0.4
1,193,791 + -0.3
1,193,792 - +0.2
1,193,800 + +1.0
1,193,800 + +0.8
1,193,830 + +0.7
1,193,830 + +0.2
1,193,831 - +0.0
1,193,831 - +0.8
1,193,831 - +0.8
1,193,865 - +0.2
1,193,977 + UW163_RS05590 0.11 +0.6
1,193,977 + UW163_RS05590 0.11 +1.2
1,193,978 - UW163_RS05590 0.11 +1.1
1,193,978 - UW163_RS05590 0.11 -0.0
1,193,978 - UW163_RS05590 0.11 -1.6
1,194,040 + UW163_RS05590 0.14 +0.8
1,194,040 + UW163_RS05590 0.14 -0.3
1,194,041 - UW163_RS05590 0.14 +0.5
1,194,041 - UW163_RS05590 0.14 -0.1
1,194,041 - UW163_RS05590 0.14 +0.4
1,194,041 - UW163_RS05590 0.14 -0.1
1,194,041 - UW163_RS05590 0.14 +0.5
1,194,041 - UW163_RS05590 0.14 +0.3
1,194,049 + UW163_RS05590 0.14 +0.3
1,194,050 - UW163_RS05590 0.14 +0.0
1,194,076 + UW163_RS05590 0.16 -0.8
1,194,076 - UW163_RS05590 0.16 +0.2
1,194,110 + UW163_RS05590 0.17 +0.4
1,194,111 - UW163_RS05590 0.17 +0.9
1,194,111 - UW163_RS05590 0.17 +0.2
1,194,111 - UW163_RS05590 0.17 +0.6
1,194,113 - UW163_RS05590 0.17 +0.0
1,194,128 + UW163_RS05590 0.18 +0.4
1,194,129 - UW163_RS05590 0.18 +0.1
1,194,196 + UW163_RS05590 0.21 -0.3
1,194,197 - UW163_RS05590 0.21 +0.0
1,194,268 + UW163_RS05590 0.25 -0.3
1,194,268 + UW163_RS05590 0.25 +0.4
1,194,268 + UW163_RS05590 0.25 -0.1
1,194,269 - UW163_RS05590 0.25 -0.1
1,194,269 - UW163_RS05590 0.25 +0.8
1,194,269 - UW163_RS05590 0.25 -0.1
1,194,411 + UW163_RS05590 0.32 +0.0
1,194,411 + UW163_RS05590 0.32 -0.3
1,194,412 - UW163_RS05590 0.32 +1.6
1,194,568 + UW163_RS05590 0.39 +1.7
1,194,568 + UW163_RS05590 0.39 -0.0
1,194,568 + UW163_RS05590 0.39 +0.6
1,194,568 + UW163_RS05590 0.39 -0.4
1,194,568 + UW163_RS05590 0.39 -0.4
1,194,569 - UW163_RS05590 0.39 -0.6
1,194,569 - UW163_RS05590 0.39 +0.1
1,194,569 - UW163_RS05590 0.39 +0.2
1,194,569 - UW163_RS05590 0.39 -0.2
1,194,569 - UW163_RS05590 0.39 +0.4
1,194,569 - UW163_RS05590 0.39 +0.9
1,194,572 + UW163_RS05590 0.39 -0.0
1,194,572 + UW163_RS05590 0.39 +0.2
1,194,573 - UW163_RS05590 0.39 +0.6
1,194,573 - UW163_RS05590 0.39 -0.9
1,194,573 - UW163_RS05590 0.39 +0.2
1,194,573 - UW163_RS05590 0.39 -0.3
1,194,573 - UW163_RS05590 0.39 +0.7
1,194,573 - UW163_RS05590 0.39 -0.3
1,194,573 - UW163_RS05590 0.39 +0.4
1,194,647 - UW163_RS05590 0.43 -0.9
1,195,192 + UW163_RS05590 0.69 -0.1
1,195,193 - UW163_RS05590 0.69 +0.6
1,195,258 - UW163_RS05590 0.72 -0.4
1,195,306 + UW163_RS05590 0.74 -0.5
1,195,307 - UW163_RS05590 0.74 +1.3
1,195,336 + UW163_RS05590 0.76 -0.0
1,195,380 - UW163_RS05590 0.78 -0.3
1,195,380 - UW163_RS05590 0.78 +0.9
1,195,579 + UW163_RS05590 0.87 -0.9
1,195,579 + UW163_RS05590 0.87 -0.4
1,195,580 - UW163_RS05590 0.87 -0.6
1,195,580 - UW163_RS05590 0.87 -0.5
1,195,580 - UW163_RS05590 0.87 -1.3
1,195,580 - UW163_RS05590 0.87 +0.5
1,195,580 - UW163_RS05590 0.87 +0.6
1,195,603 + UW163_RS05590 0.88 +0.6
1,195,603 + UW163_RS05590 0.88 +0.4
1,195,603 + UW163_RS05590 0.88 -1.0
1,195,603 + UW163_RS05590 0.88 +0.6
1,195,893 + +0.3
1,195,893 + +0.4
1,195,893 + +0.0
1,195,893 + +0.1
1,195,894 - -0.1
1,195,894 - +0.2
1,195,894 - +0.8
1,195,894 - +1.2
1,195,895 + +0.1
1,195,895 + -0.0
1,195,896 - -0.3
1,195,896 - -1.0
1,196,064 + -0.5
1,196,065 - -0.6
1,196,065 - +0.0
1,196,088 + -0.2
1,196,088 + -0.6
1,196,089 - -0.4
1,196,247 + +0.0
1,196,247 + +0.1
1,196,247 + +0.3
1,196,247 + +0.6
1,196,248 - +0.2
1,196,248 - +0.0
1,196,398 + UW163_RS05595 0.12 +0.6
1,196,400 + UW163_RS05595 0.13 -0.6
1,196,400 + UW163_RS05595 0.13 +0.2
1,196,401 - UW163_RS05595 0.13 +0.0
1,196,418 + UW163_RS05595 0.13 +0.2
1,196,418 + UW163_RS05595 0.13 +0.1
1,196,418 + UW163_RS05595 0.13 +0.1
1,196,419 - UW163_RS05595 0.13 -0.5
1,196,419 - UW163_RS05595 0.13 -0.5
1,196,419 - UW163_RS05595 0.13 -0.5
1,196,419 - UW163_RS05595 0.13 +0.0
1,196,419 - UW163_RS05595 0.13 -0.2
1,196,424 + UW163_RS05595 0.13 -0.7
1,196,424 + UW163_RS05595 0.13 +1.3
1,196,424 + UW163_RS05595 0.13 -0.2
1,196,425 - UW163_RS05595 0.13 +1.2
1,196,425 - UW163_RS05595 0.13 +0.4
1,196,425 - UW163_RS05595 0.13 -0.0
1,196,425 - UW163_RS05595 0.13 -0.2
1,196,425 - UW163_RS05595 0.13 -0.3
1,196,425 - UW163_RS05595 0.13 +1.2
1,196,425 - UW163_RS05595 0.13 +0.0
1,196,425 - UW163_RS05595 0.13 +0.7
1,196,425 - UW163_RS05595 0.13 +0.0
1,196,425 - UW163_RS05595 0.13 -0.3
1,196,425 - UW163_RS05595 0.13 +1.1
1,196,499 + UW163_RS05595 0.16 +0.0
1,196,499 + UW163_RS05595 0.16 -0.3
1,196,499 + UW163_RS05595 0.16 +0.0
1,196,499 + UW163_RS05595 0.16 +0.8
1,196,500 - UW163_RS05595 0.16 +0.2
1,196,607 + UW163_RS05595 0.19 +1.0
1,196,607 + UW163_RS05595 0.19 +0.4
1,196,607 + UW163_RS05595 0.19 -0.4
1,196,608 - UW163_RS05595 0.19 +0.3
1,196,608 - UW163_RS05595 0.19 +0.9
1,196,608 - UW163_RS05595 0.19 -0.3
1,196,623 + UW163_RS05595 0.20 -0.1
1,196,626 - UW163_RS05595 0.20 +0.0
1,196,626 - UW163_RS05595 0.20 -0.4
1,196,650 - UW163_RS05595 0.21 +0.2
1,196,680 + UW163_RS05595 0.22 +0.8
1,196,712 + UW163_RS05595 0.23 -0.3
1,196,712 + UW163_RS05595 0.23 -0.9
1,196,712 + UW163_RS05595 0.23 +0.1
1,196,713 - UW163_RS05595 0.23 +0.5

Or see this region's nucleotide sequence