Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS02935 and UW163_RS02940 are separated by 84 nucleotides UW163_RS02940 and UW163_RS02945 overlap by 35 nucleotides UW163_RS02945 and UW163_RS02950 overlap by 4 nucleotides
UW163_RS02935: UW163_RS02935 - FAA hydrolase family protein, at 607,615 to 608,607
_RS02935
UW163_RS02940: UW163_RS02940 - IclR family transcriptional regulator, at 608,692 to 609,564
_RS02940
UW163_RS02945: UW163_RS02945 - DUF3108 domain-containing protein, at 609,530 to 610,678
_RS02945
UW163_RS02950: UW163_RS02950 - 3-oxoadipate enol-lactonase, at 610,675 to 611,514
_RS02950
Position (kb) 609
610
611 Strain fitness (log2 ratio) -1
0
1
2 at 608.644 kb on - strand at 608.644 kb on - strand at 608.644 kb on - strand at 608.644 kb on - strand at 608.660 kb on - strand at 608.660 kb on - strand at 609.202 kb on + strand, within UW163_RS02940 at 609.310 kb on + strand, within UW163_RS02940 at 609.311 kb on - strand, within UW163_RS02940 at 609.311 kb on - strand, within UW163_RS02940 at 609.508 kb on + strand at 609.509 kb on + strand at 609.535 kb on + strand at 610.022 kb on + strand, within UW163_RS02945 at 610.022 kb on + strand, within UW163_RS02945 at 610.023 kb on - strand, within UW163_RS02945 at 610.082 kb on + strand, within UW163_RS02945 at 610.083 kb on - strand, within UW163_RS02945 at 610.897 kb on + strand, within UW163_RS02950 at 611.065 kb on - strand, within UW163_RS02950 at 611.065 kb on - strand, within UW163_RS02950 at 611.627 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 608,644 - +0.8 608,644 - +0.1 608,644 - -1.0 608,644 - +0.2 608,660 - -0.2 608,660 - +0.4 609,202 + UW163_RS02940 0.58 +0.6 609,310 + UW163_RS02940 0.71 +0.2 609,311 - UW163_RS02940 0.71 +1.0 609,311 - UW163_RS02940 0.71 +2.1 609,508 + +1.2 609,509 + +0.0 609,535 + +0.0 610,022 + UW163_RS02945 0.43 +1.4 610,022 + UW163_RS02945 0.43 -0.0 610,023 - UW163_RS02945 0.43 -0.8 610,082 + UW163_RS02945 0.48 +0.7 610,083 - UW163_RS02945 0.48 +0.1 610,897 + UW163_RS02950 0.26 +1.2 611,065 - UW163_RS02950 0.46 -0.6 611,065 - UW163_RS02950 0.46 +2.6 611,627 + -0.5
Or see this region's nucleotide sequence