Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS02495

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS02485 and UW163_RS02490 are separated by 165 nucleotidesUW163_RS02490 and UW163_RS02495 are separated by 27 nucleotidesUW163_RS02495 and UW163_RS02500 are separated by 75 nucleotidesUW163_RS02500 and UW163_RS02505 are separated by 50 nucleotides UW163_RS02485: UW163_RS02485 - 50S ribosomal protein L25, at 521,717 to 522,325 _RS02485 UW163_RS02490: UW163_RS02490 - aminoacyl-tRNA hydrolase, at 522,491 to 523,093 _RS02490 UW163_RS02495: UW163_RS02495 - DUF4124 domain-containing protein, at 523,121 to 523,789 _RS02495 UW163_RS02500: UW163_RS02500 - 4Fe-4S dicluster domain-containing protein, at 523,865 to 524,113 _RS02500 UW163_RS02505: UW163_RS02505 - phosphopantetheine adenylyltransferase, at 524,164 to 524,670 _RS02505 Position (kb) 523 524Strain fitness (log2 ratio) -1 0 1at 522.324 kb on - strandat 523.220 kb on + strand, within UW163_RS02495at 523.221 kb on - strand, within UW163_RS02495at 523.506 kb on - strand, within UW163_RS02495at 523.749 kb on - strandat 523.749 kb on - strandat 523.813 kb on - strandat 523.888 kb on - strandat 524.717 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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522,324 - +0.3
523,220 + UW163_RS02495 0.15 -0.0
523,221 - UW163_RS02495 0.15 -0.4
523,506 - UW163_RS02495 0.58 -0.6
523,749 - +0.8
523,749 - +1.0
523,813 - +0.4
523,888 - +0.3
524,717 - -0.2

Or see this region's nucleotide sequence