Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS01585 and UW163_RS01590 are separated by 84 nucleotides UW163_RS01590 and UW163_RS01595 are separated by 267 nucleotides UW163_RS01595 and UW163_RS01600 are separated by 183 nucleotides
UW163_RS01585: UW163_RS01585 - polymerase, at 323,687 to 325,423
_RS01585
UW163_RS01590: UW163_RS01590 - pilin, at 325,508 to 326,014
_RS01590
UW163_RS01595: UW163_RS01595 - pilin, at 326,282 to 326,803
_RS01595
UW163_RS01600: UW163_RS01600 - hypothetical protein, at 326,987 to 327,685
_RS01600
Position (kb) 326
327 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 325.312 kb on - strand at 325.329 kb on + strand at 325.330 kb on - strand at 325.333 kb on + strand at 325.333 kb on + strand at 325.333 kb on + strand at 325.333 kb on + strand at 325.333 kb on + strand at 325.334 kb on - strand at 325.334 kb on - strand at 325.355 kb on + strand at 325.355 kb on + strand at 325.355 kb on + strand at 325.356 kb on - strand at 325.397 kb on + strand at 325.398 kb on - strand at 325.410 kb on + strand at 325.410 kb on + strand at 325.410 kb on + strand at 325.410 kb on + strand at 325.410 kb on + strand at 325.410 kb on + strand at 325.411 kb on - strand at 325.509 kb on + strand at 325.530 kb on + strand at 325.530 kb on + strand at 325.530 kb on + strand at 325.530 kb on + strand at 325.531 kb on - strand at 325.531 kb on - strand at 325.531 kb on - strand at 325.531 kb on - strand at 325.589 kb on - strand, within UW163_RS01590 at 325.589 kb on - strand, within UW163_RS01590 at 325.599 kb on + strand, within UW163_RS01590 at 325.599 kb on + strand, within UW163_RS01590 at 325.600 kb on - strand, within UW163_RS01590 at 325.600 kb on - strand, within UW163_RS01590 at 325.600 kb on - strand, within UW163_RS01590 at 325.600 kb on - strand, within UW163_RS01590 at 325.615 kb on + strand, within UW163_RS01590 at 325.615 kb on + strand, within UW163_RS01590 at 325.615 kb on + strand, within UW163_RS01590 at 325.615 kb on + strand, within UW163_RS01590 at 325.615 kb on + strand, within UW163_RS01590 at 325.615 kb on + strand, within UW163_RS01590 at 325.616 kb on - strand, within UW163_RS01590 at 325.616 kb on - strand, within UW163_RS01590 at 325.616 kb on - strand, within UW163_RS01590 at 325.616 kb on - strand, within UW163_RS01590 at 325.616 kb on - strand, within UW163_RS01590 at 325.651 kb on + strand, within UW163_RS01590 at 325.681 kb on + strand, within UW163_RS01590 at 325.682 kb on - strand, within UW163_RS01590 at 325.682 kb on - strand, within UW163_RS01590 at 325.704 kb on + strand, within UW163_RS01590 at 325.705 kb on - strand, within UW163_RS01590 at 325.705 kb on - strand, within UW163_RS01590 at 325.705 kb on - strand, within UW163_RS01590 at 325.705 kb on - strand, within UW163_RS01590 at 325.705 kb on - strand, within UW163_RS01590 at 325.705 kb on - strand, within UW163_RS01590 at 325.708 kb on + strand, within UW163_RS01590 at 325.708 kb on + strand, within UW163_RS01590 at 325.708 kb on + strand, within UW163_RS01590 at 325.708 kb on + strand, within UW163_RS01590 at 325.709 kb on - strand, within UW163_RS01590 at 325.709 kb on - strand at 325.709 kb on - strand, within UW163_RS01590 at 325.709 kb on - strand, within UW163_RS01590 at 325.744 kb on + strand, within UW163_RS01590 at 325.745 kb on - strand, within UW163_RS01590 at 325.745 kb on - strand, within UW163_RS01590 at 325.747 kb on + strand, within UW163_RS01590 at 325.747 kb on + strand, within UW163_RS01590 at 325.747 kb on + strand, within UW163_RS01590 at 325.747 kb on + strand, within UW163_RS01590 at 325.747 kb on + strand, within UW163_RS01590 at 325.747 kb on + strand, within UW163_RS01590 at 325.747 kb on + strand, within UW163_RS01590 at 325.748 kb on - strand, within UW163_RS01590 at 325.748 kb on - strand, within UW163_RS01590 at 325.748 kb on - strand, within UW163_RS01590 at 325.748 kb on - strand, within UW163_RS01590 at 325.748 kb on - strand, within UW163_RS01590 at 325.748 kb on - strand, within UW163_RS01590 at 325.772 kb on - strand, within UW163_RS01590 at 325.893 kb on + strand, within UW163_RS01590 at 325.893 kb on + strand, within UW163_RS01590 at 325.893 kb on + strand, within UW163_RS01590 at 325.893 kb on + strand, within UW163_RS01590 at 325.893 kb on + strand, within UW163_RS01590 at 325.894 kb on - strand, within UW163_RS01590 at 325.894 kb on - strand, within UW163_RS01590 at 325.894 kb on - strand, within UW163_RS01590 at 325.894 kb on - strand, within UW163_RS01590 at 325.894 kb on - strand, within UW163_RS01590 at 325.894 kb on - strand, within UW163_RS01590 at 325.930 kb on + strand, within UW163_RS01590 at 325.931 kb on - strand, within UW163_RS01590 at 325.931 kb on - strand, within UW163_RS01590 at 325.931 kb on - strand, within UW163_RS01590 at 325.931 kb on - strand, within UW163_RS01590 at 326.039 kb on - strand at 326.058 kb on + strand at 326.058 kb on + strand at 326.058 kb on + strand at 326.058 kb on + strand at 326.058 kb on + strand at 326.059 kb on - strand at 326.059 kb on - strand at 326.124 kb on + strand at 326.124 kb on + strand at 326.175 kb on + strand at 326.177 kb on + strand at 326.177 kb on + strand at 326.177 kb on + strand at 326.178 kb on - strand at 326.178 kb on - strand at 326.178 kb on - strand at 326.178 kb on - strand at 326.178 kb on - strand at 326.188 kb on - strand at 326.196 kb on + strand at 326.196 kb on + strand at 326.196 kb on + strand at 326.196 kb on + strand at 326.196 kb on + strand at 326.196 kb on + strand at 326.197 kb on - strand at 326.197 kb on - strand at 326.197 kb on - strand at 326.197 kb on - strand at 326.197 kb on - strand at 326.304 kb on + strand at 326.304 kb on + strand at 326.304 kb on + strand at 326.304 kb on + strand at 326.304 kb on + strand at 326.304 kb on + strand at 326.305 kb on - strand at 326.305 kb on - strand at 326.305 kb on - strand at 326.320 kb on + strand at 326.320 kb on + strand at 326.320 kb on + strand at 326.321 kb on - strand at 326.321 kb on - strand at 326.321 kb on - strand at 326.321 kb on - strand at 326.321 kb on - strand at 326.321 kb on - strand at 326.321 kb on - strand at 326.321 kb on - strand at 326.321 kb on - strand at 326.422 kb on + strand, within UW163_RS01595 at 326.422 kb on + strand, within UW163_RS01595 at 326.448 kb on + strand, within UW163_RS01595 at 326.449 kb on - strand, within UW163_RS01595 at 326.499 kb on + strand, within UW163_RS01595 at 326.499 kb on + strand, within UW163_RS01595 at 326.499 kb on + strand, within UW163_RS01595 at 326.499 kb on + strand, within UW163_RS01595 at 326.499 kb on + strand, within UW163_RS01595 at 326.500 kb on - strand, within UW163_RS01595 at 326.500 kb on - strand, within UW163_RS01595 at 326.500 kb on - strand, within UW163_RS01595 at 326.500 kb on - strand, within UW163_RS01595 at 326.500 kb on - strand, within UW163_RS01595 at 326.500 kb on - strand, within UW163_RS01595 at 326.510 kb on - strand at 326.510 kb on - strand, within UW163_RS01595 at 326.510 kb on - strand, within UW163_RS01595 at 326.510 kb on - strand, within UW163_RS01595 at 326.510 kb on - strand, within UW163_RS01595 at 326.522 kb on - strand, within UW163_RS01595 at 326.533 kb on + strand, within UW163_RS01595 at 326.679 kb on + strand, within UW163_RS01595 at 326.679 kb on + strand, within UW163_RS01595 at 326.680 kb on - strand, within UW163_RS01595 at 326.680 kb on - strand, within UW163_RS01595 at 326.680 kb on - strand, within UW163_RS01595 at 326.688 kb on + strand, within UW163_RS01595 at 326.689 kb on - strand, within UW163_RS01595 at 326.689 kb on - strand, within UW163_RS01595 at 326.714 kb on + strand, within UW163_RS01595 at 326.715 kb on - strand, within UW163_RS01595 at 326.755 kb on + strand at 326.755 kb on + strand at 326.755 kb on + strand at 326.755 kb on + strand at 326.755 kb on + strand at 326.756 kb on - strand at 326.756 kb on - strand at 326.756 kb on - strand at 326.832 kb on - strand at 326.898 kb on - strand at 326.999 kb on + strand at 327.127 kb on + strand, within UW163_RS01600 at 327.127 kb on + strand, within UW163_RS01600 at 327.242 kb on + strand, within UW163_RS01600 at 327.242 kb on + strand, within UW163_RS01600 at 327.243 kb on - strand, within UW163_RS01600 at 327.430 kb on + strand, within UW163_RS01600 at 327.431 kb on - strand, within UW163_RS01600 at 327.438 kb on + strand, within UW163_RS01600 at 327.438 kb on + strand, within UW163_RS01600 at 327.438 kb on + strand, within UW163_RS01600 at 327.439 kb on - strand, within UW163_RS01600 at 327.439 kb on - strand, within UW163_RS01600 at 327.439 kb on - strand, within UW163_RS01600 at 327.472 kb on - strand, within UW163_RS01600 at 327.472 kb on - strand, within UW163_RS01600 at 327.742 kb on + strand at 327.743 kb on - strand at 327.743 kb on - strand at 327.744 kb on + strand at 327.744 kb on + strand at 327.745 kb on - strand at 327.745 kb on - strand at 327.745 kb on - strand at 327.745 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 325,312 - +0.1 325,329 + -0.6 325,330 - +0.1 325,333 + -0.3 325,333 + +1.6 325,333 + -0.6 325,333 + -0.8 325,333 + +0.0 325,334 - +0.1 325,334 - -0.7 325,355 + +0.6 325,355 + +0.7 325,355 + +0.4 325,356 - +1.5 325,397 + -0.2 325,398 - +1.1 325,410 + +0.2 325,410 + -0.5 325,410 + +0.1 325,410 + -0.3 325,410 + -0.0 325,410 + +0.5 325,411 - +0.5 325,509 + -0.1 325,530 + -0.8 325,530 + +0.0 325,530 + +0.7 325,530 + +0.1 325,531 - +0.4 325,531 - +0.7 325,531 - +1.0 325,531 - -0.4 325,589 - UW163_RS01590 0.16 +0.1 325,589 - UW163_RS01590 0.16 +0.1 325,599 + UW163_RS01590 0.18 -0.7 325,599 + UW163_RS01590 0.18 +0.6 325,600 - UW163_RS01590 0.18 +0.5 325,600 - UW163_RS01590 0.18 +0.6 325,600 - UW163_RS01590 0.18 -0.2 325,600 - UW163_RS01590 0.18 -0.3 325,615 + UW163_RS01590 0.21 +1.4 325,615 + UW163_RS01590 0.21 -0.5 325,615 + UW163_RS01590 0.21 +0.8 325,615 + UW163_RS01590 0.21 +0.7 325,615 + UW163_RS01590 0.21 +0.8 325,615 + UW163_RS01590 0.21 +0.0 325,616 - UW163_RS01590 0.21 -0.2 325,616 - UW163_RS01590 0.21 +0.7 325,616 - UW163_RS01590 0.21 +0.7 325,616 - UW163_RS01590 0.21 +0.3 325,616 - UW163_RS01590 0.21 +0.5 325,651 + UW163_RS01590 0.28 +1.2 325,681 + UW163_RS01590 0.34 -0.5 325,682 - UW163_RS01590 0.34 +0.8 325,682 - UW163_RS01590 0.34 +0.6 325,704 + UW163_RS01590 0.39 +1.0 325,705 - UW163_RS01590 0.39 -0.0 325,705 - UW163_RS01590 0.39 +0.5 325,705 - UW163_RS01590 0.39 +0.8 325,705 - UW163_RS01590 0.39 -0.1 325,705 - UW163_RS01590 0.39 +0.5 325,705 - UW163_RS01590 0.39 +0.2 325,708 + UW163_RS01590 0.39 +0.4 325,708 + UW163_RS01590 0.39 -1.0 325,708 + UW163_RS01590 0.39 +0.3 325,708 + UW163_RS01590 0.39 +2.3 325,709 - UW163_RS01590 0.40 -0.5 325,709 - +0.7 325,709 - UW163_RS01590 0.40 +0.1 325,709 - UW163_RS01590 0.40 +0.4 325,744 + UW163_RS01590 0.47 +0.0 325,745 - UW163_RS01590 0.47 +0.6 325,745 - UW163_RS01590 0.47 +0.8 325,747 + UW163_RS01590 0.47 +0.9 325,747 + UW163_RS01590 0.47 +0.5 325,747 + UW163_RS01590 0.47 -0.5 325,747 + UW163_RS01590 0.47 +0.1 325,747 + UW163_RS01590 0.47 -0.3 325,747 + UW163_RS01590 0.47 +0.7 325,747 + UW163_RS01590 0.47 +0.0 325,748 - UW163_RS01590 0.47 +0.1 325,748 - UW163_RS01590 0.47 +0.2 325,748 - UW163_RS01590 0.47 +0.8 325,748 - UW163_RS01590 0.47 +0.5 325,748 - UW163_RS01590 0.47 -0.3 325,748 - UW163_RS01590 0.47 -0.4 325,772 - UW163_RS01590 0.52 +0.3 325,893 + UW163_RS01590 0.76 +0.2 325,893 + UW163_RS01590 0.76 +0.7 325,893 + UW163_RS01590 0.76 -0.1 325,893 + UW163_RS01590 0.76 +2.3 325,893 + UW163_RS01590 0.76 -0.6 325,894 - UW163_RS01590 0.76 +0.1 325,894 - UW163_RS01590 0.76 +0.1 325,894 - UW163_RS01590 0.76 +0.3 325,894 - UW163_RS01590 0.76 +0.7 325,894 - UW163_RS01590 0.76 -0.3 325,894 - UW163_RS01590 0.76 +1.1 325,930 + UW163_RS01590 0.83 +0.5 325,931 - UW163_RS01590 0.83 +1.4 325,931 - UW163_RS01590 0.83 -0.9 325,931 - UW163_RS01590 0.83 +0.8 325,931 - UW163_RS01590 0.83 -0.6 326,039 - +1.7 326,058 + +1.1 326,058 + +0.8 326,058 + +1.3 326,058 + +0.3 326,058 + -0.0 326,059 - +0.1 326,059 - +0.0 326,124 + +0.9 326,124 + -2.9 326,175 + +0.1 326,177 + +0.1 326,177 + +0.1 326,177 + -0.9 326,178 - +0.3 326,178 - +0.2 326,178 - +0.6 326,178 - +0.3 326,178 - +0.0 326,188 - +0.2 326,196 + -0.7 326,196 + -0.3 326,196 + +0.3 326,196 + +0.2 326,196 + +0.8 326,196 + +0.4 326,197 - -0.2 326,197 - +1.5 326,197 - -1.5 326,197 - -0.5 326,197 - +0.2 326,304 + -0.5 326,304 + -0.3 326,304 + +0.3 326,304 + +0.3 326,304 + +0.3 326,304 + +0.3 326,305 - +0.2 326,305 - -0.6 326,305 - -0.1 326,320 + -1.1 326,320 + -0.3 326,320 + +0.7 326,321 - -0.3 326,321 - -0.2 326,321 - +0.7 326,321 - -0.2 326,321 - +0.1 326,321 - +0.3 326,321 - +2.3 326,321 - +0.2 326,321 - +0.3 326,422 + UW163_RS01595 0.27 +1.0 326,422 + UW163_RS01595 0.27 -0.1 326,448 + UW163_RS01595 0.32 -0.1 326,449 - UW163_RS01595 0.32 -0.6 326,499 + UW163_RS01595 0.42 -0.3 326,499 + UW163_RS01595 0.42 +0.3 326,499 + UW163_RS01595 0.42 -0.6 326,499 + UW163_RS01595 0.42 +0.8 326,499 + UW163_RS01595 0.42 -0.6 326,500 - UW163_RS01595 0.42 -0.0 326,500 - UW163_RS01595 0.42 +2.0 326,500 - UW163_RS01595 0.42 -0.5 326,500 - UW163_RS01595 0.42 -0.3 326,500 - UW163_RS01595 0.42 +0.3 326,500 - UW163_RS01595 0.42 +0.2 326,510 - -0.3 326,510 - UW163_RS01595 0.44 -0.0 326,510 - UW163_RS01595 0.44 +0.2 326,510 - UW163_RS01595 0.44 -0.1 326,510 - UW163_RS01595 0.44 -0.4 326,522 - UW163_RS01595 0.46 +0.2 326,533 + UW163_RS01595 0.48 +0.8 326,679 + UW163_RS01595 0.76 +0.5 326,679 + UW163_RS01595 0.76 +0.9 326,680 - UW163_RS01595 0.76 -0.1 326,680 - UW163_RS01595 0.76 +0.7 326,680 - UW163_RS01595 0.76 +0.3 326,688 + UW163_RS01595 0.78 -0.3 326,689 - UW163_RS01595 0.78 +0.1 326,689 - UW163_RS01595 0.78 -2.4 326,714 + UW163_RS01595 0.83 +1.0 326,715 - UW163_RS01595 0.83 +0.4 326,755 + +0.3 326,755 + +0.4 326,755 + +0.8 326,755 + +0.3 326,755 + +0.7 326,756 - -1.3 326,756 - +0.0 326,756 - +1.3 326,832 - -0.3 326,898 - +0.2 326,999 + +0.0 327,127 + UW163_RS01600 0.20 -0.9 327,127 + UW163_RS01600 0.20 -0.1 327,242 + UW163_RS01600 0.36 +0.5 327,242 + UW163_RS01600 0.36 +0.3 327,243 - UW163_RS01600 0.37 +0.8 327,430 + UW163_RS01600 0.63 -0.4 327,431 - UW163_RS01600 0.64 -0.0 327,438 + UW163_RS01600 0.65 -0.2 327,438 + UW163_RS01600 0.65 +0.5 327,438 + UW163_RS01600 0.65 +0.7 327,439 - UW163_RS01600 0.65 +1.9 327,439 - UW163_RS01600 0.65 -0.4 327,439 - UW163_RS01600 0.65 +0.3 327,472 - UW163_RS01600 0.69 +0.6 327,472 - UW163_RS01600 0.69 +1.1 327,742 + +0.6 327,743 - +0.1 327,743 - +0.6 327,744 + +0.0 327,744 + +1.2 327,745 - +0.1 327,745 - +0.7 327,745 - +0.0 327,745 - +0.6
Or see this region's nucleotide sequence