Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS00765

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS00755 and UW163_RS00760 are separated by 24 nucleotidesUW163_RS00760 and UW163_RS00765 are separated by 47 nucleotidesUW163_RS00765 and UW163_RS00770 are separated by 76 nucleotides UW163_RS00755: UW163_RS00755 - 6,7-dimethyl-8-ribityllumazine synthase, at 147,263 to 147,760 _RS00755 UW163_RS00760: UW163_RS00760 - transcription antitermination factor NusB, at 147,785 to 148,252 _RS00760 UW163_RS00765: UW163_RS00765 - pyridoxal phosphate-dependent aminotransferase, at 148,300 to 149,484 _RS00765 UW163_RS00770: UW163_RS00770 - lytic transglycosylase, at 149,561 to 150,778 _RS00770 Position (kb) 148 149 150Strain fitness (log2 ratio) -1 0 1 2at 148.502 kb on - strand, within UW163_RS00765at 148.684 kb on + strand, within UW163_RS00765at 148.815 kb on - strand, within UW163_RS00765at 148.942 kb on + strand, within UW163_RS00765at 148.943 kb on - strand, within UW163_RS00765at 148.943 kb on - strand, within UW163_RS00765at 148.998 kb on + strand, within UW163_RS00765at 149.168 kb on - strand, within UW163_RS00765at 149.168 kb on - strand, within UW163_RS00765at 149.168 kb on - strand, within UW163_RS00765at 149.269 kb on + strand, within UW163_RS00765at 149.269 kb on + strand, within UW163_RS00765at 149.269 kb on + strand, within UW163_RS00765at 149.270 kb on - strand, within UW163_RS00765at 149.270 kb on - strand, within UW163_RS00765at 149.270 kb on - strand, within UW163_RS00765at 149.270 kb on - strand, within UW163_RS00765at 149.270 kb on - strand, within UW163_RS00765at 149.270 kb on - strand, within UW163_RS00765at 149.270 kb on - strand, within UW163_RS00765at 149.270 kb on - strand, within UW163_RS00765at 149.275 kb on + strand, within UW163_RS00765at 149.389 kb on + strandat 149.389 kb on + strandat 149.390 kb on - strandat 149.404 kb on + strandat 149.404 kb on + strandat 149.405 kb on - strandat 149.405 kb on - strandat 149.405 kb on - strandat 149.964 kb on + strand, within UW163_RS00770at 149.964 kb on + strand, within UW163_RS00770at 149.969 kb on - strand, within UW163_RS00770at 149.969 kb on - strand, within UW163_RS00770at 150.108 kb on + strand, within UW163_RS00770at 150.153 kb on + strand, within UW163_RS00770at 150.168 kb on + strand, within UW163_RS00770at 150.169 kb on - strand, within UW163_RS00770at 150.169 kb on - strand, within UW163_RS00770at 150.338 kb on + strand, within UW163_RS00770at 150.338 kb on + strand, within UW163_RS00770at 150.338 kb on + strand, within UW163_RS00770at 150.339 kb on - strand, within UW163_RS00770

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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148,502 - UW163_RS00765 0.17 -0.5
148,684 + UW163_RS00765 0.32 +0.2
148,815 - UW163_RS00765 0.43 +0.5
148,942 + UW163_RS00765 0.54 +0.1
148,943 - UW163_RS00765 0.54 -0.9
148,943 - UW163_RS00765 0.54 +1.3
148,998 + UW163_RS00765 0.59 +0.0
149,168 - UW163_RS00765 0.73 +0.2
149,168 - UW163_RS00765 0.73 +0.7
149,168 - UW163_RS00765 0.73 -0.3
149,269 + UW163_RS00765 0.82 +0.5
149,269 + UW163_RS00765 0.82 -0.9
149,269 + UW163_RS00765 0.82 +0.5
149,270 - UW163_RS00765 0.82 -0.1
149,270 - UW163_RS00765 0.82 -0.3
149,270 - UW163_RS00765 0.82 +1.7
149,270 - UW163_RS00765 0.82 +0.2
149,270 - UW163_RS00765 0.82 +0.6
149,270 - UW163_RS00765 0.82 +0.6
149,270 - UW163_RS00765 0.82 -0.3
149,270 - UW163_RS00765 0.82 +0.1
149,275 + UW163_RS00765 0.82 -0.5
149,389 + +0.2
149,389 + -0.1
149,390 - -0.4
149,404 + +0.4
149,404 + +0.5
149,405 - -1.5
149,405 - +0.4
149,405 - +1.9
149,964 + UW163_RS00770 0.33 -0.6
149,964 + UW163_RS00770 0.33 -0.3
149,969 - UW163_RS00770 0.33 -0.1
149,969 - UW163_RS00770 0.33 -0.4
150,108 + UW163_RS00770 0.45 +1.1
150,153 + UW163_RS00770 0.49 +0.7
150,168 + UW163_RS00770 0.50 +0.9
150,169 - UW163_RS00770 0.50 +0.7
150,169 - UW163_RS00770 0.50 -1.3
150,338 + UW163_RS00770 0.64 -0.1
150,338 + UW163_RS00770 0.64 -0.7
150,338 + UW163_RS00770 0.64 +0.7
150,339 - UW163_RS00770 0.64 -0.5

Or see this region's nucleotide sequence