Experiment: Citric Acid (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04939 and PFR28_04940 are separated by 1 nucleotides PFR28_04940 and PFR28_04941 are separated by 38 nucleotides PFR28_04941 and PFR28_04942 are separated by 103 nucleotides PFR28_04942 and PFR28_04943 are separated by 76 nucleotides PFR28_04943 and PFR28_04944 are separated by 517 nucleotides
PFR28_04939: PFR28_04939 - putative protein YibN, at 5,632,247 to 5,632,660
_04939
PFR28_04940: PFR28_04940 - Glutaredoxin 3, at 5,632,662 to 5,632,916
_04940
PFR28_04941: PFR28_04941 - Protein-export protein SecB, at 5,632,955 to 5,633,437
_04941
PFR28_04942: PFR28_04942 - 'tRNA (cytidine(34)-2'-O)-methyltransferase' transl_table=11, at 5,633,541 to 5,633,996
_04942
PFR28_04943: PFR28_04943 - hypothetical protein, at 5,634,073 to 5,634,432
_04943
PFR28_04944: PFR28_04944 - DNA-binding transcriptional regulator NtrC, at 5,634,950 to 5,636,386
_04944
Position (kb) 5633
5634 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5632.680 kb on + strand at 5632.680 kb on + strand at 5632.681 kb on - strand at 5632.693 kb on - strand, within PFR28_04940 at 5632.693 kb on - strand, within PFR28_04940 at 5632.701 kb on + strand, within PFR28_04940 at 5632.701 kb on + strand, within PFR28_04940 at 5632.702 kb on - strand, within PFR28_04940 at 5632.702 kb on - strand, within PFR28_04940 at 5632.811 kb on + strand, within PFR28_04940 at 5632.811 kb on + strand, within PFR28_04940 at 5632.811 kb on + strand, within PFR28_04940 at 5632.811 kb on + strand, within PFR28_04940 at 5632.811 kb on + strand, within PFR28_04940 at 5632.811 kb on + strand, within PFR28_04940 at 5632.811 kb on + strand, within PFR28_04940 at 5632.811 kb on + strand, within PFR28_04940 at 5632.812 kb on - strand, within PFR28_04940 at 5632.812 kb on - strand, within PFR28_04940 at 5632.812 kb on - strand, within PFR28_04940 at 5632.812 kb on - strand, within PFR28_04940 at 5632.812 kb on - strand, within PFR28_04940 at 5632.812 kb on - strand, within PFR28_04940 at 5632.812 kb on - strand, within PFR28_04940 at 5632.812 kb on - strand, within PFR28_04940 at 5632.869 kb on + strand, within PFR28_04940 at 5632.869 kb on + strand, within PFR28_04940 at 5632.870 kb on - strand, within PFR28_04940 at 5632.926 kb on + strand at 5632.926 kb on + strand at 5632.926 kb on + strand at 5632.926 kb on + strand at 5632.926 kb on + strand at 5632.926 kb on + strand at 5632.926 kb on + strand at 5632.926 kb on + strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5633.024 kb on + strand, within PFR28_04941 at 5633.024 kb on + strand, within PFR28_04941 at 5633.024 kb on + strand, within PFR28_04941 at 5633.024 kb on + strand, within PFR28_04941 at 5633.024 kb on + strand, within PFR28_04941 at 5633.024 kb on + strand, within PFR28_04941 at 5633.024 kb on + strand, within PFR28_04941 at 5633.024 kb on + strand, within PFR28_04941 at 5633.024 kb on + strand, within PFR28_04941 at 5633.024 kb on + strand, within PFR28_04941 at 5633.025 kb on - strand, within PFR28_04941 at 5633.025 kb on - strand, within PFR28_04941 at 5633.025 kb on - strand, within PFR28_04941 at 5633.025 kb on - strand, within PFR28_04941 at 5633.025 kb on - strand, within PFR28_04941 at 5633.028 kb on + strand, within PFR28_04941 at 5633.028 kb on + strand, within PFR28_04941 at 5633.029 kb on - strand, within PFR28_04941 at 5633.029 kb on - strand, within PFR28_04941 at 5633.029 kb on - strand, within PFR28_04941 at 5633.029 kb on - strand, within PFR28_04941 at 5633.095 kb on - strand, within PFR28_04941 at 5633.263 kb on + strand, within PFR28_04941 at 5633.384 kb on + strand, within PFR28_04941 at 5633.385 kb on - strand, within PFR28_04941 at 5633.836 kb on + strand, within PFR28_04942 at 5633.836 kb on + strand, within PFR28_04942 at 5633.836 kb on + strand, within PFR28_04942 at 5633.836 kb on + strand, within PFR28_04942 at 5633.837 kb on - strand, within PFR28_04942 at 5633.837 kb on - strand, within PFR28_04942 at 5633.837 kb on - strand, within PFR28_04942 at 5633.845 kb on + strand, within PFR28_04942 at 5633.846 kb on - strand, within PFR28_04942 at 5633.846 kb on - strand, within PFR28_04942 at 5633.846 kb on - strand, within PFR28_04942 at 5634.012 kb on + strand at 5634.012 kb on + strand at 5634.013 kb on - strand at 5634.013 kb on - strand at 5634.013 kb on - strand at 5634.013 kb on - strand at 5634.013 kb on - strand at 5634.030 kb on + strand at 5634.030 kb on + strand at 5634.031 kb on - strand at 5634.031 kb on - strand at 5634.031 kb on - strand at 5634.031 kb on - strand at 5634.031 kb on - strand at 5634.059 kb on + strand at 5634.059 kb on + strand at 5634.059 kb on + strand at 5634.059 kb on + strand at 5634.059 kb on + strand at 5634.059 kb on + strand at 5634.059 kb on + strand at 5634.059 kb on + strand at 5634.059 kb on + strand at 5634.059 kb on + strand at 5634.060 kb on - strand at 5634.060 kb on - strand at 5634.431 kb on - strand at 5634.431 kb on - strand at 5634.456 kb on + strand at 5634.457 kb on - strand at 5634.457 kb on - strand at 5634.457 kb on - strand at 5634.505 kb on + strand at 5634.505 kb on + strand at 5634.505 kb on + strand at 5634.506 kb on - strand at 5634.532 kb on + strand at 5634.532 kb on + strand at 5634.533 kb on - strand at 5634.598 kb on + strand at 5634.599 kb on - strand at 5634.632 kb on + strand at 5634.632 kb on + strand at 5634.632 kb on + strand at 5634.633 kb on - strand at 5634.917 kb on - strand at 5634.936 kb on + strand at 5634.936 kb on + strand at 5634.937 kb on - strand at 5634.937 kb on - strand at 5634.937 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Citric Acid (C) 10 mM remove 5,632,680 + -0.1 5,632,680 + +0.4 5,632,681 - -0.2 5,632,693 - PFR28_04940 0.12 +0.4 5,632,693 - PFR28_04940 0.12 +0.4 5,632,701 + PFR28_04940 0.15 -0.2 5,632,701 + PFR28_04940 0.15 -0.7 5,632,702 - PFR28_04940 0.16 +0.8 5,632,702 - PFR28_04940 0.16 +2.5 5,632,811 + PFR28_04940 0.58 -0.9 5,632,811 + PFR28_04940 0.58 +0.7 5,632,811 + PFR28_04940 0.58 +0.2 5,632,811 + PFR28_04940 0.58 -0.4 5,632,811 + PFR28_04940 0.58 -0.3 5,632,811 + PFR28_04940 0.58 -0.3 5,632,811 + PFR28_04940 0.58 +0.3 5,632,811 + PFR28_04940 0.58 -0.3 5,632,812 - PFR28_04940 0.59 -0.2 5,632,812 - PFR28_04940 0.59 -0.2 5,632,812 - PFR28_04940 0.59 -0.2 5,632,812 - PFR28_04940 0.59 -0.4 5,632,812 - PFR28_04940 0.59 +0.8 5,632,812 - PFR28_04940 0.59 -0.2 5,632,812 - PFR28_04940 0.59 -1.1 5,632,812 - PFR28_04940 0.59 +1.1 5,632,869 + PFR28_04940 0.81 +0.8 5,632,869 + PFR28_04940 0.81 +0.1 5,632,870 - PFR28_04940 0.82 +0.6 5,632,926 + -0.0 5,632,926 + -0.1 5,632,926 + +0.2 5,632,926 + +0.4 5,632,926 + -0.3 5,632,926 + -0.6 5,632,926 + +0.1 5,632,926 + +0.3 5,632,927 - -1.3 5,632,927 - +1.3 5,632,927 - +1.0 5,632,927 - +0.4 5,632,927 - -1.3 5,632,927 - -0.1 5,632,927 - -0.9 5,632,927 - -0.0 5,632,927 - -0.1 5,632,927 - +0.9 5,632,927 - -0.8 5,632,927 - -0.7 5,632,927 - +0.6 5,632,927 - +0.4 5,632,927 - -0.9 5,632,927 - -1.3 5,632,927 - +1.0 5,633,024 + PFR28_04941 0.14 -1.4 5,633,024 + PFR28_04941 0.14 +0.9 5,633,024 + PFR28_04941 0.14 -1.3 5,633,024 + PFR28_04941 0.14 +0.5 5,633,024 + PFR28_04941 0.14 +1.0 5,633,024 + PFR28_04941 0.14 -1.5 5,633,024 + PFR28_04941 0.14 -0.7 5,633,024 + PFR28_04941 0.14 +0.8 5,633,024 + PFR28_04941 0.14 +1.5 5,633,024 + PFR28_04941 0.14 -0.2 5,633,025 - PFR28_04941 0.14 +0.4 5,633,025 - PFR28_04941 0.14 -2.9 5,633,025 - PFR28_04941 0.14 +0.8 5,633,025 - PFR28_04941 0.14 +0.7 5,633,025 - PFR28_04941 0.14 +0.9 5,633,028 + PFR28_04941 0.15 -0.7 5,633,028 + PFR28_04941 0.15 +1.0 5,633,029 - PFR28_04941 0.15 -0.6 5,633,029 - PFR28_04941 0.15 +1.6 5,633,029 - PFR28_04941 0.15 -0.7 5,633,029 - PFR28_04941 0.15 -0.5 5,633,095 - PFR28_04941 0.29 -1.3 5,633,263 + PFR28_04941 0.64 -0.2 5,633,384 + PFR28_04941 0.89 -0.2 5,633,385 - PFR28_04941 0.89 +1.3 5,633,836 + PFR28_04942 0.65 -0.4 5,633,836 + PFR28_04942 0.65 +0.5 5,633,836 + PFR28_04942 0.65 -0.0 5,633,836 + PFR28_04942 0.65 +0.6 5,633,837 - PFR28_04942 0.65 +0.7 5,633,837 - PFR28_04942 0.65 -0.4 5,633,837 - PFR28_04942 0.65 +0.4 5,633,845 + PFR28_04942 0.67 -0.3 5,633,846 - PFR28_04942 0.67 -0.4 5,633,846 - PFR28_04942 0.67 +0.7 5,633,846 - PFR28_04942 0.67 +1.1 5,634,012 + +0.1 5,634,012 + +0.3 5,634,013 - -0.4 5,634,013 - -0.1 5,634,013 - +0.0 5,634,013 - +0.9 5,634,013 - -0.1 5,634,030 + +1.3 5,634,030 + +0.5 5,634,031 - +0.2 5,634,031 - -0.5 5,634,031 - +0.5 5,634,031 - -0.3 5,634,031 - -0.1 5,634,059 + -1.0 5,634,059 + -1.2 5,634,059 + +0.2 5,634,059 + +0.5 5,634,059 + +0.0 5,634,059 + +0.5 5,634,059 + +0.4 5,634,059 + +0.4 5,634,059 + +0.0 5,634,059 + -0.5 5,634,060 - +0.2 5,634,060 - -0.6 5,634,431 - -0.7 5,634,431 - -0.2 5,634,456 + +0.5 5,634,457 - -0.8 5,634,457 - +0.3 5,634,457 - -0.5 5,634,505 + -1.3 5,634,505 + +0.1 5,634,505 + -0.8 5,634,506 - +0.5 5,634,532 + +0.2 5,634,532 + -0.2 5,634,533 - -1.5 5,634,598 + -2.0 5,634,599 - +1.0 5,634,632 + +0.0 5,634,632 + +1.6 5,634,632 + +0.5 5,634,633 - -0.4 5,634,917 - -0.3 5,634,936 + +0.4 5,634,936 + +0.1 5,634,937 - -0.5 5,634,937 - +0.4 5,634,937 - -0.2
Or see this region's nucleotide sequence