Strain Fitness in Pseudomonas sp. RS175 around PFR28_03366

Experiment: Citric Acid (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Citric Acid (C) 10 mM
3,871,316	+		PFR28_03365	0.14	+0.5
3,871,316	+		PFR28_03365	0.14	-0.1
3,871,316	+		PFR28_03365	0.14	-3.7
3,871,316	+		PFR28_03365	0.14	+1.4
3,871,316	+		PFR28_03365	0.14	+0.5
3,871,316	+		PFR28_03365	0.14	-0.2
3,871,316	+		PFR28_03365	0.14	+0.1
3,871,317	-		PFR28_03365	0.14	+0.3
3,871,317	-		PFR28_03365	0.14	+0.4
3,871,330	+		PFR28_03365	0.16	-0.3
3,871,330	+		PFR28_03365	0.16	+0.1
3,871,331	-		PFR28_03365	0.16	-0.8
3,871,424	+		PFR28_03365	0.28	+0.3
3,871,424	+		PFR28_03365	0.28	+0.5
3,871,424	+		PFR28_03365	0.28	-2.5
3,871,425	-		PFR28_03365	0.28	+0.4
3,871,425	-		PFR28_03365	0.28	-0.1
3,871,425	-		PFR28_03365	0.28	+0.4
3,871,425	-		PFR28_03365	0.28	+1.2
3,871,425	-		PFR28_03365	0.28	-0.3
3,871,621	+		PFR28_03365	0.53	+0.6
3,871,621	+		PFR28_03365	0.53	-0.2
3,871,621	+		PFR28_03365	0.53	+1.6
3,871,621	+		PFR28_03365	0.53	+0.7
3,871,621	+		PFR28_03365	0.53	-0.6
3,871,621	+		PFR28_03365	0.53	-0.5
3,871,621	+		PFR28_03365	0.53	+0.3
3,871,621	+		PFR28_03365	0.53	-0.5
3,871,622	-		PFR28_03365	0.53	+0.0
3,871,622	-		PFR28_03365	0.53	+0.2
3,871,622	-		PFR28_03365	0.53	-0.0
3,871,622	-		PFR28_03365	0.53	-1.3
3,871,622	-		PFR28_03365	0.53	-0.3
3,871,622	-		PFR28_03365	0.53	-0.6
3,871,622	-		PFR28_03365	0.53	-0.5
3,871,622	-		PFR28_03365	0.53	+1.3
3,871,705	-		PFR28_03365	0.64	-0.4
3,871,705	-		PFR28_03365	0.64	-0.1
3,871,734	-		PFR28_03365	0.67	-0.3
3,871,734	-		PFR28_03365	0.67	-0.2
3,871,734	-		PFR28_03365	0.67	-1.7
3,871,734	-		PFR28_03365	0.67	-1.4
3,871,734	-		PFR28_03365	0.67	+0.1
3,871,751	+		PFR28_03365	0.69	-1.9
3,871,751	+		PFR28_03365	0.69	-1.2
3,871,751	+		PFR28_03365	0.69	-0.4
3,871,751	+		PFR28_03365	0.69	+0.4
3,871,751	+		PFR28_03365	0.69	+1.8
3,871,751	+		PFR28_03365	0.69	+0.6
3,871,751	+		PFR28_03365	0.69	-0.8
3,871,751	+		PFR28_03365	0.69	-0.8
3,871,751	+		PFR28_03365	0.69	-1.0
3,871,752	-		PFR28_03365	0.70	-0.2
3,871,752	-		PFR28_03365	0.70	-0.5
3,871,752	-		PFR28_03365	0.70	-0.7
3,871,752	-		PFR28_03365	0.70	+1.6
3,871,752	-		PFR28_03365	0.70	-0.3
3,871,752	-		PFR28_03365	0.70	+0.3
3,871,752	-		PFR28_03365	0.70	+0.0
3,871,752	-		PFR28_03365	0.70	+0.1
3,871,752	-		PFR28_03365	0.70	+0.2
3,871,752	-		PFR28_03365	0.70	-0.7
3,871,752	-		PFR28_03365	0.70	+0.5
3,871,780	+		PFR28_03365	0.73	-2.9
3,871,780	+		PFR28_03365	0.73	-0.3
3,871,780	+		PFR28_03365	0.73	+1.2
3,871,780	+		PFR28_03365	0.73	-0.6
3,871,780	+		PFR28_03365	0.73	+1.6
3,871,780	+		PFR28_03365	0.73	+0.3
3,871,780	+		PFR28_03365	0.73	+0.1
3,871,780	+		PFR28_03365	0.73	-0.0
3,871,780	+		PFR28_03365	0.73	+0.0
3,871,780	+		PFR28_03365	0.73	-0.2
3,871,780	+		PFR28_03365	0.73	-0.9
3,871,780	+		PFR28_03365	0.73	-0.8
3,871,780	+		PFR28_03365	0.73	-0.4
3,871,781	-		PFR28_03365	0.73	-0.3
3,871,781	-		PFR28_03365	0.73	-0.1
3,871,781	-		PFR28_03365	0.73	-0.5
3,871,781	-		PFR28_03365	0.73	-0.3
3,871,781	-		PFR28_03365	0.73	-1.0
3,871,781	-		PFR28_03365	0.73	+0.4
3,871,781	-		PFR28_03365	0.73	-0.5
3,871,781	-		PFR28_03365	0.73	+0.0
3,871,781	-		PFR28_03365	0.73	+0.3
3,871,815	+		PFR28_03365	0.78	-0.3
3,872,006	-				+0.3
3,872,006	-				-0.2
3,872,323	+		PFR28_03366	0.36	-0.1
3,872,324	-		PFR28_03366	0.36	-0.7
3,872,324	-		PFR28_03366	0.36	+0.3
3,872,324	-		PFR28_03366	0.36	+1.2
3,872,337	+		PFR28_03366	0.39	-0.5
3,872,338	-		PFR28_03366	0.39	-0.5
3,872,539	-		PFR28_03366	0.82	-1.4
3,872,539	-		PFR28_03366	0.82	-0.2
3,872,565	+		PFR28_03366	0.87	-0.9
3,872,565	+		PFR28_03366	0.87	-0.9
3,872,565	+		PFR28_03366	0.87	+0.5
3,872,565	+		PFR28_03366	0.87	-0.2
3,872,565	+		PFR28_03366	0.87	+0.0
3,872,566	-		PFR28_03366	0.88	+0.4
3,872,566	-		PFR28_03366	0.88	+0.4
3,872,566	-		PFR28_03366	0.88	-0.2
3,872,566	-		PFR28_03366	0.88	-0.7
3,872,566	-		PFR28_03366	0.88	-0.9
3,872,566	-		PFR28_03366	0.88	+0.2
3,872,575	+		PFR28_03366	0.90	-1.7
3,872,575	+		PFR28_03366	0.90	-0.3
3,872,575	+		PFR28_03366	0.90	-0.8
3,872,576	-		PFR28_03366	0.90	-0.8
3,872,666	+				-0.3
3,872,666	+				-0.2
3,872,666	+				+0.0
3,872,666	+				+1.2
3,872,666	+				-0.1
3,872,666	+				+0.1
3,872,666	+				+1.4
3,872,666	+				+0.7
3,872,667	-				+0.7
3,872,667	-				-0.9
3,872,709	+				+0.1
3,872,709	+				-1.4
3,872,709	+				+1.8
3,872,710	-				+1.2
3,872,710	-				-0.7
3,872,711	+				+0.1
3,872,711	+				+1.2
3,872,712	-				+2.1
3,872,712	-				-0.8
3,872,712	-				+0.0
3,872,712	-				-0.6
3,872,720	+				+0.1
3,872,721	-				-1.2
3,872,721	-				-0.3
3,872,721	-				-2.6
3,872,750	+				-0.7
3,872,750	+				-0.5
3,872,751	-				-0.5
3,872,751	-				+0.2
3,872,751	-				+0.2
3,872,792	+				-0.3
3,872,806	+				+0.9
3,872,806	+				+0.5
3,872,809	-				-0.2
3,872,809	-				+0.4
3,872,831	+				+0.1
3,872,831	+				+0.8
3,872,831	+				+1.0
3,872,831	+				+0.9
3,872,831	+				+0.1
3,872,831	+				-1.3
3,872,831	+				-1.0
3,872,832	-				-0.0
3,872,832	-				+1.1
3,872,832	-				+1.5
3,872,832	-				+0.4
3,872,832	-				-0.2
3,872,832	-				-0.1
3,872,832	-				-0.2
3,872,832	-				+0.4
3,872,832	-				+0.4
3,872,842	+				+0.3
3,872,842	+				-1.1
3,872,842	+				+0.1
3,872,843	-				-0.4
3,872,843	-				+0.1
3,872,843	-				-0.2
3,872,908	-				+0.0
3,872,957	+				+1.2
3,872,957	+				+1.2
3,872,957	+				+0.4
3,872,958	-				-0.7
3,872,958	-				+0.0
3,872,958	-				-1.4
3,872,958	-				+0.3
3,872,958	-				+0.5
3,872,958	-				-0.2
3,873,121	+		PFR28_03367	0.21	-0.2
3,873,121	+		PFR28_03367	0.21	+0.1
3,873,122	-		PFR28_03367	0.21	+0.2
3,873,122	-		PFR28_03367	0.21	-0.7
3,873,217	+		PFR28_03367	0.32	+0.6
3,873,217	+		PFR28_03367	0.32	+0.6
3,873,217	+		PFR28_03367	0.32	+1.2
3,873,217	+		PFR28_03367	0.32	-0.0
3,873,217	+		PFR28_03367	0.32	+0.4
3,873,217	+		PFR28_03367	0.32	+0.4
3,873,217	+		PFR28_03367	0.32	-0.0
3,873,217	+		PFR28_03367	0.32	+0.5
3,873,217	+		PFR28_03367	0.32	+0.6
3,873,217	+		PFR28_03367	0.32	-0.2
3,873,217	+		PFR28_03367	0.32	+0.2
3,873,217	+		PFR28_03367	0.32	-3.0
3,873,217	+		PFR28_03367	0.32	+0.3
3,873,217	+		PFR28_03367	0.32	+0.9
3,873,217	+		PFR28_03367	0.32	-0.4
3,873,217	+		PFR28_03367	0.32	-0.2
3,873,217	+		PFR28_03367	0.32	+1.4
3,873,217	+		PFR28_03367	0.32	-0.2
3,873,217	+		PFR28_03367	0.32	+0.2
3,873,217	+		PFR28_03367	0.32	+0.3
3,873,217	+		PFR28_03367	0.32	+0.5
3,873,217	+		PFR28_03367	0.32	-0.1
3,873,217	+		PFR28_03367	0.32	+1.3
3,873,217	+		PFR28_03367	0.32	+0.2
3,873,217	+		PFR28_03367	0.32	+0.4
3,873,217	+		PFR28_03367	0.32	+0.5
3,873,217	+		PFR28_03367	0.32	-0.4
3,873,217	+		PFR28_03367	0.32	+0.8
3,873,217	+		PFR28_03367	0.32	+0.2
3,873,218	-		PFR28_03367	0.32	+0.7
3,873,218	-		PFR28_03367	0.32	+1.6
3,873,218	-		PFR28_03367	0.32	+0.1
3,873,218	-		PFR28_03367	0.32	+0.6
3,873,218	-		PFR28_03367	0.32	+0.6
3,873,218	-		PFR28_03367	0.32	-0.1
3,873,218	-		PFR28_03367	0.32	-0.8
3,873,218	-		PFR28_03367	0.32	+0.4
3,873,218	-		PFR28_03367	0.32	+0.3
3,873,218	-		PFR28_03367	0.32	+0.4
3,873,218	-		PFR28_03367	0.32	-0.2
3,873,218	-		PFR28_03367	0.32	+1.2
3,873,218	-		PFR28_03367	0.32	+0.3
3,873,218	-		PFR28_03367	0.32	-0.5
3,873,218	-		PFR28_03367	0.32	-0.1
3,873,218	-		PFR28_03367	0.32	+0.8
3,873,218	-		PFR28_03367	0.32	+0.7
3,873,218	-		PFR28_03367	0.32	-0.4
3,873,218	-		PFR28_03367	0.32	+0.6
3,873,218	-		PFR28_03367	0.32	+0.5
3,873,218	-		PFR28_03367	0.32	+0.7
3,873,218	-		PFR28_03367	0.32	-0.5
3,873,218	-		PFR28_03367	0.32	+0.3
3,873,219	+		PFR28_03367	0.32	-0.2
3,873,220	-		PFR28_03367	0.32	-0.8
3,873,220	-		PFR28_03367	0.32	+0.9
3,873,265	+		PFR28_03367	0.38	+0.2
3,873,266	-		PFR28_03367	0.38	-0.8
3,873,274	+		PFR28_03367	0.39	-0.2
3,873,274	+		PFR28_03367	0.39	+0.5
3,873,274	+		PFR28_03367	0.39	+0.6
3,873,275	-		PFR28_03367	0.39	+0.2
3,873,275	-		PFR28_03367	0.39	-0.9
3,873,275	-		PFR28_03367	0.39	+1.1
3,873,275	-		PFR28_03367	0.39	-0.2
3,873,275	-		PFR28_03367	0.39	+0.1
3,873,364	+		PFR28_03367	0.49	+0.6