Strain Fitness in Pseudomonas sp. RS175 around PFR28_01184

Experiment: Citric Acid (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01181 and PFR28_01182 are separated by 45 nucleotidesPFR28_01182 and PFR28_01183 overlap by 1 nucleotidesPFR28_01183 and PFR28_01184 are separated by 104 nucleotidesPFR28_01184 and PFR28_01185 are separated by 10 nucleotides PFR28_01181: PFR28_01181 - hypothetical protein, at 1,292,399 to 1,292,722 _01181 PFR28_01182: PFR28_01182 - hypothetical protein, at 1,292,768 to 1,292,980 _01182 PFR28_01183: PFR28_01183 - hypothetical protein, at 1,292,980 to 1,293,441 _01183 PFR28_01184: PFR28_01184 - hypothetical protein, at 1,293,546 to 1,294,244 _01184 PFR28_01185: PFR28_01185 - hypothetical protein, at 1,294,255 to 1,295,262 _01185 Position (kb) 1293 1294 1295Strain fitness (log2 ratio) -2 -1 0 1at 1292.602 kb on - strand, within PFR28_01181at 1292.602 kb on - strand, within PFR28_01181at 1292.646 kb on + strand, within PFR28_01181at 1292.646 kb on + strand, within PFR28_01181at 1292.646 kb on + strand, within PFR28_01181at 1292.646 kb on + strand, within PFR28_01181at 1292.647 kb on - strand, within PFR28_01181at 1292.648 kb on + strand, within PFR28_01181at 1292.741 kb on + strandat 1292.742 kb on - strandat 1292.778 kb on - strandat 1292.778 kb on - strandat 1292.919 kb on + strand, within PFR28_01182at 1292.920 kb on - strand, within PFR28_01182at 1292.986 kb on + strandat 1292.987 kb on - strandat 1292.987 kb on - strandat 1293.051 kb on - strand, within PFR28_01183at 1293.399 kb on + strandat 1293.400 kb on - strandat 1293.400 kb on - strandat 1293.459 kb on + strandat 1293.460 kb on - strandat 1293.922 kb on + strand, within PFR28_01184at 1293.922 kb on + strand, within PFR28_01184at 1293.922 kb on + strand, within PFR28_01184at 1293.923 kb on - strand, within PFR28_01184at 1293.923 kb on - strand, within PFR28_01184at 1293.923 kb on - strand, within PFR28_01184at 1293.923 kb on - strand, within PFR28_01184at 1294.036 kb on + strand, within PFR28_01184at 1294.036 kb on + strand, within PFR28_01184at 1294.036 kb on + strand, within PFR28_01184at 1294.036 kb on + strand, within PFR28_01184at 1294.036 kb on + strand, within PFR28_01184at 1294.037 kb on - strand, within PFR28_01184at 1294.037 kb on - strand, within PFR28_01184at 1294.037 kb on - strand, within PFR28_01184at 1294.037 kb on - strand, within PFR28_01184at 1294.045 kb on + strand, within PFR28_01184at 1294.046 kb on - strand, within PFR28_01184at 1294.046 kb on - strand, within PFR28_01184at 1294.046 kb on - strand, within PFR28_01184at 1294.310 kb on + strandat 1294.310 kb on + strandat 1294.311 kb on - strandat 1294.311 kb on - strandat 1294.311 kb on - strandat 1294.311 kb on - strandat 1294.311 kb on - strandat 1294.331 kb on + strandat 1294.331 kb on + strandat 1294.332 kb on - strandat 1294.332 kb on - strandat 1294.494 kb on + strand, within PFR28_01185at 1294.543 kb on - strand, within PFR28_01185at 1294.554 kb on - strand, within PFR28_01185at 1294.554 kb on - strand, within PFR28_01185at 1294.554 kb on - strand, within PFR28_01185at 1294.554 kb on - strand, within PFR28_01185at 1294.554 kb on - strand, within PFR28_01185at 1294.554 kb on - strand, within PFR28_01185at 1295.096 kb on + strand, within PFR28_01185at 1295.228 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid (C) 10 mM
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1,292,602 - PFR28_01181 0.63 -0.0
1,292,602 - PFR28_01181 0.63 -1.7
1,292,646 + PFR28_01181 0.76 -0.0
1,292,646 + PFR28_01181 0.76 +0.2
1,292,646 + PFR28_01181 0.76 +0.2
1,292,646 + PFR28_01181 0.76 +0.3
1,292,647 - PFR28_01181 0.77 -0.3
1,292,648 + PFR28_01181 0.77 -0.5
1,292,741 + -1.1
1,292,742 - -2.7
1,292,778 - -0.5
1,292,778 - +0.5
1,292,919 + PFR28_01182 0.71 +0.4
1,292,920 - PFR28_01182 0.71 +0.1
1,292,986 + -0.4
1,292,987 - -2.6
1,292,987 - -2.2
1,293,051 - PFR28_01183 0.15 -1.2
1,293,399 + +0.1
1,293,400 - +1.4
1,293,400 - -0.5
1,293,459 + -0.4
1,293,460 - +0.1
1,293,922 + PFR28_01184 0.54 -0.1
1,293,922 + PFR28_01184 0.54 -0.1
1,293,922 + PFR28_01184 0.54 -0.4
1,293,923 - PFR28_01184 0.54 -1.2
1,293,923 - PFR28_01184 0.54 -1.1
1,293,923 - PFR28_01184 0.54 -0.5
1,293,923 - PFR28_01184 0.54 -1.9
1,294,036 + PFR28_01184 0.70 -0.4
1,294,036 + PFR28_01184 0.70 -0.2
1,294,036 + PFR28_01184 0.70 -1.1
1,294,036 + PFR28_01184 0.70 -0.1
1,294,036 + PFR28_01184 0.70 -0.5
1,294,037 - PFR28_01184 0.70 -0.6
1,294,037 - PFR28_01184 0.70 -1.2
1,294,037 - PFR28_01184 0.70 -1.2
1,294,037 - PFR28_01184 0.70 -0.9
1,294,045 + PFR28_01184 0.71 -0.7
1,294,046 - PFR28_01184 0.72 -1.5
1,294,046 - PFR28_01184 0.72 -0.6
1,294,046 - PFR28_01184 0.72 -1.1
1,294,310 + +0.0
1,294,310 + -0.6
1,294,311 - -1.3
1,294,311 - -0.6
1,294,311 - -1.1
1,294,311 - -1.5
1,294,311 - -0.2
1,294,331 + -0.5
1,294,331 + +1.1
1,294,332 - -1.0
1,294,332 - -1.0
1,294,494 + PFR28_01185 0.24 -0.2
1,294,543 - PFR28_01185 0.29 -0.1
1,294,554 - PFR28_01185 0.30 -0.4
1,294,554 - PFR28_01185 0.30 -0.1
1,294,554 - PFR28_01185 0.30 +0.1
1,294,554 - PFR28_01185 0.30 +0.7
1,294,554 - PFR28_01185 0.30 +0.3
1,294,554 - PFR28_01185 0.30 -0.1
1,295,096 + PFR28_01185 0.83 -0.8
1,295,228 + -0.8

Or see this region's nucleotide sequence