Strain Fitness in Pseudomonas sp. RS175 around PFR28_00939

Experiment: Citric Acid (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Citric Acid (C) 10 mM
1,020,087	+		PFR28_00937	0.72	-0.5
1,020,087	+		PFR28_00937	0.72	-2.3
1,020,087	+		PFR28_00937	0.72	+1.2
1,020,089	+		PFR28_00937	0.72	-0.1
1,020,089	+		PFR28_00937	0.72	-0.3
1,020,089	+		PFR28_00937	0.72	+0.2
1,020,089	+		PFR28_00937	0.72	-0.3
1,020,090	-		PFR28_00937	0.72	+0.4
1,020,090	-		PFR28_00937	0.72	+0.3
1,020,090	-		PFR28_00937	0.72	+0.0
1,020,090	-		PFR28_00937	0.72	+0.2
1,020,090	-		PFR28_00937	0.72	-0.6
1,020,090	-		PFR28_00937	0.72	+0.5
1,020,090	-		PFR28_00937	0.72	-0.0
1,020,143	+		PFR28_00937	0.76	-0.7
1,020,144	-		PFR28_00937	0.76	-0.7
1,020,317	+		PFR28_00937	0.88	-0.2
1,020,317	+		PFR28_00937	0.88	+1.4
1,020,317	+		PFR28_00937	0.88	-0.1
1,020,317	+		PFR28_00937	0.88	-0.2
1,020,317	+		PFR28_00937	0.88	-0.0
1,020,317	+		PFR28_00937	0.88	+0.1
1,020,317	+		PFR28_00937	0.88	+1.0
1,020,317	+		PFR28_00937	0.88	+0.8
1,020,317	+		PFR28_00937	0.88	-0.1
1,020,317	+		PFR28_00937	0.88	-0.6
1,020,317	+		PFR28_00937	0.88	+0.1
1,020,317	+		PFR28_00937	0.88	+0.8
1,020,317	+		PFR28_00937	0.88	-1.0
1,020,317	+		PFR28_00937	0.88	-1.7
1,020,317	+		PFR28_00937	0.88	-0.6
1,020,317	+		PFR28_00937	0.88	+1.1
1,020,317	+		PFR28_00937	0.88	-0.7
1,020,317	+		PFR28_00937	0.88	+0.4
1,020,317	+		PFR28_00937	0.88	+1.6
1,020,317	+		PFR28_00937	0.88	+0.1
1,020,317	+		PFR28_00937	0.88	-0.2
1,020,317	+		PFR28_00937	0.88	-0.8
1,020,317	+		PFR28_00937	0.88	+0.0
1,020,317	+		PFR28_00937	0.88	+1.0
1,020,318	-		PFR28_00937	0.88	+0.9
1,020,318	-		PFR28_00937	0.88	+1.1
1,020,318	-		PFR28_00937	0.88	-0.2
1,020,318	-		PFR28_00937	0.88	-2.0
1,020,318	-		PFR28_00937	0.88	+1.0
1,020,318	-		PFR28_00937	0.88	+0.6
1,020,318	-		PFR28_00937	0.88	-0.0
1,020,318	-		PFR28_00937	0.88	-0.2
1,020,318	-		PFR28_00937	0.88	-1.0
1,020,318	-		PFR28_00937	0.88	+1.9
1,020,318	-		PFR28_00937	0.88	+1.1
1,020,318	-		PFR28_00937	0.88	+0.2
1,020,318	-		PFR28_00937	0.88	-0.4
1,020,318	-		PFR28_00937	0.88	-0.1
1,020,318	-		PFR28_00937	0.88	+0.1
1,020,318	-		PFR28_00937	0.88	+0.5
1,020,318	-		PFR28_00937	0.88	-1.6
1,020,318	-		PFR28_00937	0.88	-0.0
1,020,360	+				+0.1
1,020,380	+				+0.4
1,020,380	+				+0.2
1,020,380	+				-0.1
1,020,380	+				+0.2
1,020,380	+				-0.5
1,020,380	+				-0.2
1,020,381	-				+0.0
1,020,381	-				-0.1
1,020,381	-				-0.6
1,020,434	-				-1.1
1,020,496	+				-0.0
1,020,538	+				-0.1
1,020,538	+				-0.3
1,020,555	+				+0.2
1,020,575	+				+0.3
1,020,599	+				-0.0
1,020,600	-				-0.2
1,020,675	+				-0.1
1,020,675	+				-1.2
1,020,675	+				-0.2
1,020,676	-				-1.6
1,020,676	-				+0.0
1,020,676	-				+0.4
1,020,676	-				-1.1
1,020,730	-				+0.4
1,020,740	+				+1.4
1,020,773	+				-0.2
1,020,774	-				-1.4
1,020,885	+		PFR28_00938	0.57	-0.1
1,020,885	+		PFR28_00938	0.57	+0.6
1,020,886	-		PFR28_00938	0.58	-0.8
1,020,886	-		PFR28_00938	0.58	+0.5
1,020,886	-		PFR28_00938	0.58	+1.1
1,020,921	+				+0.1
1,020,921	+				+0.0
1,020,921	+				+0.1
1,020,921	+				+2.4
1,020,922	-				+0.1
1,020,922	-				-0.2
1,020,922	-				-0.4
1,020,947	+				-0.1
1,020,947	+				-1.1
1,021,010	+				-0.1
1,021,010	+				-1.9
1,021,010	+				-0.2
1,021,010	+				-0.0
1,021,010	+				-1.8
1,021,010	+				-0.3
1,021,011	-				+0.9
1,021,011	-				+0.0
1,021,011	-				+0.4
1,021,011	-				-1.0
1,021,011	-				+0.1
1,021,011	-				-0.6
1,021,011	-				+0.7
1,021,014	-				+0.5
1,021,128	-		PFR28_00939	0.12	+0.2
1,021,191	+		PFR28_00939	0.15	+0.3
1,021,200	-		PFR28_00939	0.16	-0.1
1,021,200	-		PFR28_00939	0.16	-0.6
1,021,200	-		PFR28_00939	0.16	-0.1
1,021,279	+		PFR28_00939	0.20	-0.6
1,021,279	+		PFR28_00939	0.20	+0.1
1,021,279	+		PFR28_00939	0.20	-0.7
1,021,280	-		PFR28_00939	0.21	+0.2
1,021,295	+		PFR28_00939	0.21	+0.6
1,021,296	-		PFR28_00939	0.21	+0.0
1,021,319	+		PFR28_00939	0.23	-0.5
1,021,319	+		PFR28_00939	0.23	-0.1
1,021,319	+		PFR28_00939	0.23	+0.8
1,021,319	+		PFR28_00939	0.23	-0.1
1,021,319	+		PFR28_00939	0.23	+0.1
1,021,319	+		PFR28_00939	0.23	+1.1
1,021,319	+		PFR28_00939	0.23	-0.2
1,021,319	+		PFR28_00939	0.23	-0.2
1,021,320	-		PFR28_00939	0.23	-0.0
1,021,320	-		PFR28_00939	0.23	+0.0
1,021,320	-		PFR28_00939	0.23	+0.2
1,021,320	-		PFR28_00939	0.23	+0.2
1,021,320	-		PFR28_00939	0.23	-0.0
1,021,320	-		PFR28_00939	0.23	-0.2
1,021,435	+		PFR28_00939	0.30	-0.2
1,021,435	+		PFR28_00939	0.30	+0.3
1,021,469	+		PFR28_00939	0.32	-0.6
1,021,470	-		PFR28_00939	0.32	-0.5
1,021,470	-		PFR28_00939	0.32	+0.5
1,021,495	-		PFR28_00939	0.33	+0.1
1,021,512	+		PFR28_00939	0.34	+0.5
1,021,544	+		PFR28_00939	0.36	-0.3
1,021,544	+		PFR28_00939	0.36	-0.4
1,021,544	+		PFR28_00939	0.36	-0.0
1,021,544	+		PFR28_00939	0.36	-0.9
1,021,545	-		PFR28_00939	0.36	-0.2
1,021,545	-		PFR28_00939	0.36	-0.1
1,021,631	-		PFR28_00939	0.41	-0.1
1,021,747	+		PFR28_00939	0.48	-0.2
1,021,747	+		PFR28_00939	0.48	+0.9
1,021,747	+		PFR28_00939	0.48	+0.3
1,021,748	-		PFR28_00939	0.48	+0.3
1,021,748	-		PFR28_00939	0.48	+0.5
1,021,760	+		PFR28_00939	0.49	+0.1
1,021,760	+		PFR28_00939	0.49	-0.0
1,021,760	+		PFR28_00939	0.49	-1.7
1,021,761	-		PFR28_00939	0.49	+0.3
1,021,761	-		PFR28_00939	0.49	-0.2
1,021,761	-		PFR28_00939	0.49	-0.2
1,021,761	-		PFR28_00939	0.49	+0.1
1,021,831	+		PFR28_00939	0.53	+0.3
1,021,831	+		PFR28_00939	0.53	-0.9
1,021,831	+		PFR28_00939	0.53	+0.0
1,021,832	-		PFR28_00939	0.53	-0.2
1,021,832	-		PFR28_00939	0.53	-0.1
1,021,832	-		PFR28_00939	0.53	+0.1
1,021,850	+		PFR28_00939	0.54	+0.0
1,022,153	+		PFR28_00939	0.72	+0.4
1,022,153	+		PFR28_00939	0.72	-0.2
1,022,154	-		PFR28_00939	0.72	+0.7
1,022,154	-		PFR28_00939	0.72	+0.0
1,022,315	+		PFR28_00939	0.82	-1.3
1,022,316	-		PFR28_00939	0.82	-0.1
1,022,316	-		PFR28_00939	0.82	+0.0
1,022,316	-		PFR28_00939	0.82	+0.6
1,022,316	-		PFR28_00939	0.82	-0.3
1,022,316	-		PFR28_00939	0.82	+0.7
1,022,316	-		PFR28_00939	0.82	-0.7
1,022,316	-		PFR28_00939	0.82	-0.5
1,022,316	-		PFR28_00939	0.82	+0.2
1,022,316	-		PFR28_00939	0.82	-0.3
1,022,321	+		PFR28_00939	0.82	-0.3
1,022,321	+		PFR28_00939	0.82	+0.3
1,022,321	+		PFR28_00939	0.82	+0.1
1,022,321	+		PFR28_00939	0.82	+0.1
1,022,321	+		PFR28_00939	0.82	+0.4
1,022,321	+		PFR28_00939	0.82	+1.0
1,022,321	+		PFR28_00939	0.82	-0.8
1,022,322	-		PFR28_00939	0.82	+0.3
1,022,322	-		PFR28_00939	0.82	-0.0
1,022,322	-		PFR28_00939	0.82	+0.1
1,022,322	-		PFR28_00939	0.82	+0.2
1,022,323	+		PFR28_00939	0.82	+0.3
1,022,323	+		PFR28_00939	0.82	-0.2
1,022,323	+		PFR28_00939	0.82	-0.3
1,022,323	+		PFR28_00939	0.82	+0.2
1,022,323	+		PFR28_00939	0.82	+0.3
1,022,323	+		PFR28_00939	0.82	+0.1
1,022,324	-		PFR28_00939	0.82	-0.7
1,022,324	-		PFR28_00939	0.82	-0.3
1,022,324	-		PFR28_00939	0.82	+0.9
1,022,324	-		PFR28_00939	0.82	+0.1
1,022,374	+		PFR28_00939	0.85	-0.7
1,022,375	-		PFR28_00939	0.85	+0.8
1,022,375	-		PFR28_00939	0.85	+1.1
1,022,375	-		PFR28_00939	0.85	-0.1
1,022,429	+		PFR28_00939	0.88	-0.2
1,022,429	+		PFR28_00939	0.88	-0.5
1,022,429	+		PFR28_00939	0.88	+0.0
1,022,430	-		PFR28_00939	0.88	+0.4
1,022,556	+				+0.7
1,022,642	+				+0.3
1,022,642	+				+0.1
1,022,643	-				+0.2
1,022,643	-				-0.8
1,022,702	+				-0.5
1,022,702	+				-0.1
1,022,702	+				+0.0
1,022,703	-				-0.9
1,022,703	-				+0.3
1,022,703	-				+0.1
1,022,761	-				-0.4
1,022,761	-				+0.9
1,023,314	+		PFR28_00940	0.33	+0.5
1,023,314	+		PFR28_00940	0.33	-0.2
1,023,314	+		PFR28_00940	0.33	+0.3
1,023,315	-		PFR28_00940	0.33	+0.2
1,023,315	-		PFR28_00940	0.33	+0.0
1,023,315	-		PFR28_00940	0.33	+0.9
1,023,584	+		PFR28_00940	0.46	-0.2
1,023,584	+		PFR28_00940	0.46	+0.2
1,023,584	+		PFR28_00940	0.46	+0.5
1,023,584	+		PFR28_00940	0.46	+0.1
1,023,585	-		PFR28_00940	0.46	-0.3
1,023,585	-		PFR28_00940	0.46	+0.0
1,023,585	-		PFR28_00940	0.46	-0.1
1,023,585	-		PFR28_00940	0.46	+0.1
1,023,585	-		PFR28_00940	0.46	-0.4
1,023,585	-		PFR28_00940	0.46	-0.0
1,023,613	+		PFR28_00940	0.48	-0.9
1,023,613	+		PFR28_00940	0.48	+0.0
1,023,613	+		PFR28_00940	0.48	+0.3
1,023,614	-		PFR28_00940	0.48	-2.2
1,023,614	-		PFR28_00940	0.48	+0.3
1,023,614	-		PFR28_00940	0.48	-0.1
1,023,615	+		PFR28_00940	0.48	+0.4
1,023,615	+		PFR28_00940	0.48	+0.2
1,023,615	+		PFR28_00940	0.48	+0.1
1,023,615	+		PFR28_00940	0.48	+1.4
1,023,615	+		PFR28_00940	0.48	-0.2
1,023,615	+		PFR28_00940	0.48	-0.7
1,023,615	+		PFR28_00940	0.48	-0.1
1,023,615	+		PFR28_00940	0.48	-0.6
1,023,615	+		PFR28_00940	0.48	+0.1
1,023,615	+		PFR28_00940	0.48	+0.3
1,023,616	-		PFR28_00940	0.48	+0.1
1,023,616	-		PFR28_00940	0.48	-1.2
1,023,616	-		PFR28_00940	0.48	-0.1
1,023,616	-		PFR28_00940	0.48	+0.6
1,023,616	-		PFR28_00940	0.48	+0.2
1,023,616	-		PFR28_00940	0.48	+0.8
1,023,616	-		PFR28_00940	0.48	-0.2
1,023,616	-		PFR28_00940	0.48	+0.1
1,023,616	-		PFR28_00940	0.48	-0.8
1,023,616	-		PFR28_00940	0.48	+0.4
1,023,616	-		PFR28_00940	0.48	-1.2
1,023,616	-		PFR28_00940	0.48	+0.1
1,023,616	-		PFR28_00940	0.48	+0.1
1,023,616	-		PFR28_00940	0.48	+0.2
1,023,616	-		PFR28_00940	0.48	-0.4