Strain Fitness in Pseudomonas sp. RS175 around PFR28_00684

Experiment: Citric Acid (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00682 and PFR28_00683 are separated by 232 nucleotidesPFR28_00683 and PFR28_00684 overlap by 8 nucleotidesPFR28_00684 and PFR28_00685 are separated by 85 nucleotidesPFR28_00685 and PFR28_00686 are separated by 35 nucleotides PFR28_00682: PFR28_00682 - hypothetical protein, at 725,942 to 726,127 _00682 PFR28_00683: PFR28_00683 - Transcriptional regulatory protein tctD, at 726,360 to 727,031 _00683 PFR28_00684: PFR28_00684 - Sensor protein QseC, at 727,024 to 728,415 _00684 PFR28_00685: PFR28_00685 - hypothetical protein, at 728,501 to 729,322 _00685 PFR28_00686: PFR28_00686 - tRNA-modifying protein YgfZ, at 729,358 to 730,299 _00686 Position (kb) 727 728 729Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 726.024 kb on + strand, within PFR28_00682at 726.024 kb on + strand, within PFR28_00682at 726.024 kb on + strand, within PFR28_00682at 726.025 kb on - strand, within PFR28_00682at 726.025 kb on - strand, within PFR28_00682at 726.025 kb on - strand, within PFR28_00682at 726.025 kb on - strand, within PFR28_00682at 726.134 kb on + strandat 726.134 kb on + strandat 726.134 kb on + strandat 726.134 kb on + strandat 726.135 kb on - strandat 726.135 kb on - strandat 726.144 kb on + strandat 726.145 kb on - strandat 726.145 kb on - strandat 726.145 kb on - strandat 726.153 kb on + strandat 726.217 kb on - strandat 726.217 kb on - strandat 726.232 kb on + strandat 726.232 kb on + strandat 726.252 kb on - strandat 726.355 kb on + strandat 726.355 kb on + strandat 726.355 kb on + strandat 726.356 kb on - strandat 726.356 kb on - strandat 726.356 kb on - strandat 726.356 kb on - strandat 726.492 kb on + strand, within PFR28_00683at 726.493 kb on - strand, within PFR28_00683at 726.514 kb on + strand, within PFR28_00683at 726.515 kb on - strand, within PFR28_00683at 726.515 kb on - strand, within PFR28_00683at 726.760 kb on - strand, within PFR28_00683at 726.760 kb on - strand, within PFR28_00683at 726.760 kb on - strand, within PFR28_00683at 726.760 kb on - strand, within PFR28_00683at 726.760 kb on - strand, within PFR28_00683at 726.760 kb on - strand, within PFR28_00683at 726.937 kb on - strand, within PFR28_00683at 726.937 kb on - strand, within PFR28_00683at 726.937 kb on - strand, within PFR28_00683at 727.006 kb on - strandat 727.029 kb on + strandat 727.029 kb on + strandat 727.030 kb on - strandat 727.030 kb on - strandat 727.030 kb on - strandat 727.030 kb on - strandat 727.030 kb on - strandat 727.214 kb on + strand, within PFR28_00684at 727.215 kb on - strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.276 kb on + strand, within PFR28_00684at 727.276 kb on + strand, within PFR28_00684at 727.276 kb on + strand, within PFR28_00684at 727.276 kb on + strand, within PFR28_00684at 727.276 kb on + strand, within PFR28_00684at 727.276 kb on + strand, within PFR28_00684at 727.276 kb on + strand, within PFR28_00684at 727.276 kb on + strand, within PFR28_00684at 727.276 kb on + strand, within PFR28_00684at 727.276 kb on + strand, within PFR28_00684at 727.276 kb on + strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.279 kb on + strand, within PFR28_00684at 727.279 kb on + strand, within PFR28_00684at 727.280 kb on - strand, within PFR28_00684at 727.387 kb on + strand, within PFR28_00684at 727.388 kb on - strand, within PFR28_00684at 727.388 kb on - strand, within PFR28_00684at 727.388 kb on - strand, within PFR28_00684at 727.399 kb on + strand, within PFR28_00684at 727.399 kb on + strand, within PFR28_00684at 727.399 kb on + strand, within PFR28_00684at 727.400 kb on - strand, within PFR28_00684at 727.400 kb on - strand, within PFR28_00684at 727.400 kb on - strand, within PFR28_00684at 727.400 kb on - strand, within PFR28_00684at 727.694 kb on + strand, within PFR28_00684at 727.694 kb on + strand, within PFR28_00684at 727.695 kb on - strand, within PFR28_00684at 727.695 kb on - strand, within PFR28_00684at 727.695 kb on - strand, within PFR28_00684at 728.151 kb on + strand, within PFR28_00684at 728.151 kb on + strand, within PFR28_00684at 728.151 kb on + strand, within PFR28_00684at 728.152 kb on - strand, within PFR28_00684at 728.267 kb on - strand, within PFR28_00684at 728.427 kb on + strandat 728.427 kb on + strandat 728.427 kb on + strandat 728.427 kb on + strandat 728.428 kb on - strandat 728.428 kb on - strandat 728.428 kb on - strandat 728.428 kb on - strandat 728.428 kb on - strandat 728.428 kb on - strandat 728.446 kb on + strandat 728.446 kb on + strandat 728.446 kb on + strandat 728.446 kb on + strandat 728.446 kb on + strandat 728.446 kb on + strandat 728.446 kb on + strandat 728.446 kb on + strandat 728.446 kb on + strandat 728.446 kb on + strandat 728.446 kb on + strandat 728.446 kb on + strandat 728.446 kb on + strandat 728.446 kb on + strandat 728.446 kb on + strandat 728.446 kb on + strandat 728.446 kb on + strandat 728.446 kb on + strandat 728.446 kb on + strandat 728.447 kb on - strandat 728.447 kb on - strandat 728.447 kb on - strandat 728.447 kb on - strandat 728.447 kb on - strandat 728.447 kb on - strandat 728.447 kb on - strandat 728.447 kb on - strandat 728.447 kb on - strandat 728.447 kb on - strandat 728.447 kb on - strandat 728.447 kb on - strandat 728.447 kb on - strandat 728.447 kb on - strandat 728.447 kb on - strandat 728.448 kb on + strandat 728.448 kb on + strandat 728.448 kb on + strandat 728.448 kb on + strandat 728.448 kb on + strandat 728.448 kb on + strandat 728.448 kb on + strandat 728.448 kb on + strandat 728.448 kb on + strandat 728.448 kb on + strandat 728.448 kb on + strandat 728.449 kb on - strandat 728.449 kb on - strandat 728.449 kb on - strandat 728.449 kb on - strandat 728.449 kb on - strandat 728.449 kb on - strandat 728.449 kb on - strandat 728.449 kb on - strandat 728.449 kb on - strandat 728.449 kb on - strandat 728.449 kb on - strandat 728.449 kb on - strandat 728.449 kb on - strandat 728.449 kb on - strandat 728.449 kb on - strandat 728.449 kb on - strandat 728.449 kb on - strandat 728.449 kb on - strandat 728.505 kb on + strandat 728.505 kb on + strandat 728.505 kb on + strandat 728.506 kb on - strandat 728.506 kb on - strandat 728.506 kb on - strandat 728.631 kb on + strand, within PFR28_00685at 728.631 kb on + strand, within PFR28_00685at 728.631 kb on + strand, within PFR28_00685at 728.631 kb on + strand, within PFR28_00685at 728.631 kb on + strand, within PFR28_00685at 728.631 kb on + strand, within PFR28_00685at 728.637 kb on + strand, within PFR28_00685at 728.638 kb on - strand, within PFR28_00685at 728.638 kb on - strand, within PFR28_00685at 728.638 kb on - strand, within PFR28_00685at 728.638 kb on - strand, within PFR28_00685at 728.667 kb on + strand, within PFR28_00685at 728.668 kb on - strand, within PFR28_00685at 728.668 kb on - strand, within PFR28_00685at 728.841 kb on + strand, within PFR28_00685at 728.841 kb on + strand, within PFR28_00685at 728.841 kb on + strand, within PFR28_00685at 728.841 kb on + strand, within PFR28_00685at 728.841 kb on + strand, within PFR28_00685at 728.842 kb on - strand, within PFR28_00685at 728.842 kb on - strand, within PFR28_00685at 728.842 kb on - strand, within PFR28_00685at 728.916 kb on + strand, within PFR28_00685at 728.934 kb on + strand, within PFR28_00685at 728.934 kb on + strand, within PFR28_00685at 728.934 kb on + strand, within PFR28_00685at 728.934 kb on + strand, within PFR28_00685at 728.935 kb on - strand, within PFR28_00685at 728.935 kb on - strand, within PFR28_00685at 729.054 kb on + strand, within PFR28_00685at 729.054 kb on + strand, within PFR28_00685at 729.054 kb on + strand, within PFR28_00685at 729.054 kb on + strand, within PFR28_00685at 729.054 kb on + strand, within PFR28_00685at 729.054 kb on + strand, within PFR28_00685at 729.054 kb on + strand, within PFR28_00685at 729.054 kb on + strand, within PFR28_00685at 729.054 kb on + strand, within PFR28_00685at 729.054 kb on + strand, within PFR28_00685at 729.054 kb on + strand, within PFR28_00685at 729.055 kb on - strand, within PFR28_00685at 729.055 kb on - strand, within PFR28_00685at 729.055 kb on - strand, within PFR28_00685at 729.055 kb on - strand, within PFR28_00685at 729.055 kb on - strand, within PFR28_00685at 729.305 kb on - strandat 729.333 kb on + strandat 729.392 kb on + strandat 729.393 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid (C) 10 mM
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726,024 + PFR28_00682 0.44 -2.4
726,024 + PFR28_00682 0.44 -1.9
726,024 + PFR28_00682 0.44 -3.5
726,025 - PFR28_00682 0.45 +0.1
726,025 - PFR28_00682 0.45 -2.7
726,025 - PFR28_00682 0.45 +0.6
726,025 - PFR28_00682 0.45 +0.3
726,134 + -2.7
726,134 + -2.2
726,134 + -4.5
726,134 + -2.9
726,135 - -1.3
726,135 - -1.0
726,144 + -2.1
726,145 - -0.1
726,145 - -0.4
726,145 - -0.8
726,153 + -0.5
726,217 - -0.0
726,217 - +0.7
726,232 + -3.1
726,232 + -3.5
726,252 - -1.1
726,355 + -1.9
726,355 + -3.5
726,355 + -2.1
726,356 - -4.1
726,356 - -0.8
726,356 - -3.6
726,356 - -1.8
726,492 + PFR28_00683 0.20 -4.5
726,493 - PFR28_00683 0.20 -4.1
726,514 + PFR28_00683 0.23 -5.1
726,515 - PFR28_00683 0.23 -5.0
726,515 - PFR28_00683 0.23 -1.6
726,760 - PFR28_00683 0.60 -4.4
726,760 - PFR28_00683 0.60 -2.8
726,760 - PFR28_00683 0.60 -2.5
726,760 - PFR28_00683 0.60 -1.8
726,760 - PFR28_00683 0.60 -3.9
726,760 - PFR28_00683 0.60 -3.1
726,937 - PFR28_00683 0.86 -3.7
726,937 - PFR28_00683 0.86 -4.0
726,937 - PFR28_00683 0.86 -3.7
727,006 - -3.3
727,029 + -3.2
727,029 + +0.9
727,030 - -3.3
727,030 - -2.6
727,030 - -3.0
727,030 - -1.8
727,030 - -3.3
727,214 + PFR28_00684 0.14 -1.8
727,215 - PFR28_00684 0.14 -4.5
727,231 + PFR28_00684 0.15 -3.7
727,231 + PFR28_00684 0.15 -3.5
727,231 + PFR28_00684 0.15 -3.9
727,231 + PFR28_00684 0.15 -3.4
727,231 + PFR28_00684 0.15 -2.0
727,231 + PFR28_00684 0.15 -3.7
727,231 + PFR28_00684 0.15 -3.9
727,231 + PFR28_00684 0.15 -1.8
727,231 + PFR28_00684 0.15 -3.7
727,231 + PFR28_00684 0.15 -2.1
727,231 + PFR28_00684 0.15 -3.3
727,231 + PFR28_00684 0.15 -2.2
727,231 + PFR28_00684 0.15 -4.7
727,231 + PFR28_00684 0.15 -4.0
727,231 + PFR28_00684 0.15 -3.9
727,231 + PFR28_00684 0.15 -1.9
727,232 - PFR28_00684 0.15 -2.4
727,232 - PFR28_00684 0.15 -0.8
727,232 - PFR28_00684 0.15 -2.9
727,232 - PFR28_00684 0.15 -1.6
727,232 - PFR28_00684 0.15 -4.0
727,232 - PFR28_00684 0.15 -3.1
727,232 - PFR28_00684 0.15 -3.6
727,232 - PFR28_00684 0.15 -4.9
727,232 - PFR28_00684 0.15 -4.9
727,232 - PFR28_00684 0.15 -4.3
727,232 - PFR28_00684 0.15 -4.4
727,232 - PFR28_00684 0.15 -5.1
727,232 - PFR28_00684 0.15 -3.1
727,232 - PFR28_00684 0.15 -2.9
727,232 - PFR28_00684 0.15 -4.0
727,232 - PFR28_00684 0.15 -5.6
727,276 + PFR28_00684 0.18 -3.6
727,276 + PFR28_00684 0.18 -4.5
727,276 + PFR28_00684 0.18 -0.8
727,276 + PFR28_00684 0.18 -2.7
727,276 + PFR28_00684 0.18 -3.2
727,276 + PFR28_00684 0.18 -3.1
727,276 + PFR28_00684 0.18 -4.1
727,276 + PFR28_00684 0.18 -2.3
727,276 + PFR28_00684 0.18 -3.2
727,276 + PFR28_00684 0.18 -4.7
727,276 + PFR28_00684 0.18 -2.4
727,277 - PFR28_00684 0.18 -3.4
727,277 - PFR28_00684 0.18 -4.2
727,277 - PFR28_00684 0.18 -3.7
727,277 - PFR28_00684 0.18 -3.3
727,277 - PFR28_00684 0.18 -3.2
727,277 - PFR28_00684 0.18 -3.6
727,277 - PFR28_00684 0.18 -4.4
727,277 - PFR28_00684 0.18 -3.3
727,277 - PFR28_00684 0.18 -4.0
727,277 - PFR28_00684 0.18 -5.0
727,277 - PFR28_00684 0.18 -1.6
727,277 - PFR28_00684 0.18 -2.2
727,277 - PFR28_00684 0.18 -4.5
727,277 - PFR28_00684 0.18 -4.9
727,277 - PFR28_00684 0.18 -1.2
727,277 - PFR28_00684 0.18 -2.8
727,277 - PFR28_00684 0.18 -4.3
727,277 - PFR28_00684 0.18 -3.9
727,279 + PFR28_00684 0.18 -3.0
727,279 + PFR28_00684 0.18 -3.1
727,280 - PFR28_00684 0.18 -4.0
727,387 + PFR28_00684 0.26 -3.7
727,388 - PFR28_00684 0.26 -4.0
727,388 - PFR28_00684 0.26 -3.7
727,388 - PFR28_00684 0.26 -3.7
727,399 + PFR28_00684 0.27 -4.2
727,399 + PFR28_00684 0.27 -4.4
727,399 + PFR28_00684 0.27 -5.0
727,400 - PFR28_00684 0.27 -2.0
727,400 - PFR28_00684 0.27 -2.1
727,400 - PFR28_00684 0.27 -1.6
727,400 - PFR28_00684 0.27 -2.1
727,694 + PFR28_00684 0.48 -5.1
727,694 + PFR28_00684 0.48 -2.3
727,695 - PFR28_00684 0.48 -3.2
727,695 - PFR28_00684 0.48 -3.0
727,695 - PFR28_00684 0.48 -1.4
728,151 + PFR28_00684 0.81 -2.4
728,151 + PFR28_00684 0.81 -6.1
728,151 + PFR28_00684 0.81 -4.3
728,152 - PFR28_00684 0.81 +1.2
728,267 - PFR28_00684 0.89 -2.1
728,427 + -0.1
728,427 + +0.5
728,427 + -0.6
728,427 + -0.3
728,428 - +1.5
728,428 - -0.3
728,428 - +0.2
728,428 - +0.6
728,428 - +0.9
728,428 - +0.5
728,446 + -1.1
728,446 + +0.6
728,446 + +0.2
728,446 + +0.6
728,446 + -0.2
728,446 + -2.6
728,446 + +0.3
728,446 + -0.4
728,446 + +0.5
728,446 + +0.4
728,446 + +0.1
728,446 + +0.3
728,446 + -0.3
728,446 + +1.2
728,446 + +0.6
728,446 + +0.6
728,446 + +0.3
728,446 + +0.4
728,446 + +0.6
728,447 - +0.3
728,447 - -0.4
728,447 - -0.2
728,447 - +0.2
728,447 - +0.3
728,447 - +2.2
728,447 - +0.1
728,447 - +0.0
728,447 - +0.1
728,447 - -0.9
728,447 - +0.2
728,447 - -1.2
728,447 - +0.3
728,447 - +0.5
728,447 - -0.4
728,448 + +0.5
728,448 + +0.2
728,448 + -0.0
728,448 + -1.6
728,448 + -0.5
728,448 + +0.3
728,448 + -0.4
728,448 + +0.7
728,448 + +0.3
728,448 + +1.1
728,448 + +0.3
728,449 - -1.0
728,449 - +0.1
728,449 - -1.9
728,449 - +0.1
728,449 - +1.2
728,449 - +0.7
728,449 - +0.3
728,449 - +1.4
728,449 - -1.4
728,449 - +0.4
728,449 - -0.2
728,449 - -0.5
728,449 - -0.2
728,449 - +0.4
728,449 - -0.8
728,449 - -0.3
728,449 - -0.1
728,449 - -0.6
728,505 + -0.0
728,505 + +0.2
728,505 + -0.1
728,506 - -0.1
728,506 - -1.1
728,506 - +0.2
728,631 + PFR28_00685 0.16 -0.1
728,631 + PFR28_00685 0.16 +1.1
728,631 + PFR28_00685 0.16 +0.3
728,631 + PFR28_00685 0.16 -0.7
728,631 + PFR28_00685 0.16 -0.3
728,631 + PFR28_00685 0.16 +0.3
728,637 + PFR28_00685 0.17 +0.1
728,638 - PFR28_00685 0.17 -1.4
728,638 - PFR28_00685 0.17 -0.8
728,638 - PFR28_00685 0.17 -1.2
728,638 - PFR28_00685 0.17 -0.1
728,667 + PFR28_00685 0.20 +1.1
728,668 - PFR28_00685 0.20 +0.0
728,668 - PFR28_00685 0.20 +1.1
728,841 + PFR28_00685 0.41 +1.3
728,841 + PFR28_00685 0.41 +0.1
728,841 + PFR28_00685 0.41 +0.7
728,841 + PFR28_00685 0.41 -0.2
728,841 + PFR28_00685 0.41 +0.3
728,842 - PFR28_00685 0.41 -0.1
728,842 - PFR28_00685 0.41 +0.2
728,842 - PFR28_00685 0.41 -0.0
728,916 + PFR28_00685 0.50 +0.1
728,934 + PFR28_00685 0.53 +0.1
728,934 + PFR28_00685 0.53 -0.7
728,934 + PFR28_00685 0.53 +0.1
728,934 + PFR28_00685 0.53 -0.4
728,935 - PFR28_00685 0.53 -0.8
728,935 - PFR28_00685 0.53 +0.8
729,054 + PFR28_00685 0.67 -0.0
729,054 + PFR28_00685 0.67 +0.0
729,054 + PFR28_00685 0.67 -1.0
729,054 + PFR28_00685 0.67 -0.3
729,054 + PFR28_00685 0.67 -0.9
729,054 + PFR28_00685 0.67 -0.1
729,054 + PFR28_00685 0.67 +0.8
729,054 + PFR28_00685 0.67 -0.1
729,054 + PFR28_00685 0.67 -1.0
729,054 + PFR28_00685 0.67 +0.4
729,054 + PFR28_00685 0.67 -0.3
729,055 - PFR28_00685 0.67 +0.3
729,055 - PFR28_00685 0.67 -0.2
729,055 - PFR28_00685 0.67 -0.1
729,055 - PFR28_00685 0.67 +0.4
729,055 - PFR28_00685 0.67 -0.4
729,305 - +1.0
729,333 + +0.2
729,392 + -0.6
729,393 - -0.7

Or see this region's nucleotide sequence