Experiment: Citric Acid (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00679 and PFR28_00680 are separated by 1 nucleotides PFR28_00680 and PFR28_00681 are separated by 55 nucleotides PFR28_00681 and PFR28_00682 are separated by 79 nucleotides PFR28_00682 and PFR28_00683 are separated by 232 nucleotides
PFR28_00679: PFR28_00679 - hypothetical protein, at 722,852 to 724,366
_00679
PFR28_00680: PFR28_00680 - hypothetical protein, at 724,368 to 724,829
_00680
PFR28_00681: PFR28_00681 - hypothetical protein, at 724,885 to 725,862
_00681
PFR28_00682: PFR28_00682 - hypothetical protein, at 725,942 to 726,127
_00682
PFR28_00683: PFR28_00683 - Transcriptional regulatory protein tctD, at 726,360 to 727,031
_00683
Position (kb) 724
725
726 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 723.922 kb on - strand, within PFR28_00679 at 724.081 kb on + strand, within PFR28_00679 at 724.159 kb on - strand, within PFR28_00679 at 724.159 kb on - strand, within PFR28_00679 at 724.312 kb on + strand at 724.312 kb on + strand at 724.313 kb on - strand at 724.314 kb on + strand at 724.315 kb on - strand at 724.315 kb on - strand at 724.315 kb on - strand at 724.315 kb on - strand at 724.315 kb on - strand at 724.315 kb on - strand at 724.350 kb on + strand at 724.350 kb on + strand at 724.351 kb on - strand at 724.351 kb on - strand at 724.367 kb on - strand at 724.431 kb on + strand, within PFR28_00680 at 724.431 kb on + strand, within PFR28_00680 at 724.431 kb on + strand, within PFR28_00680 at 724.432 kb on - strand, within PFR28_00680 at 724.432 kb on - strand, within PFR28_00680 at 724.432 kb on - strand, within PFR28_00680 at 724.432 kb on - strand, within PFR28_00680 at 724.432 kb on - strand, within PFR28_00680 at 724.432 kb on - strand, within PFR28_00680 at 724.432 kb on - strand, within PFR28_00680 at 724.435 kb on + strand, within PFR28_00680 at 724.435 kb on + strand, within PFR28_00680 at 724.436 kb on - strand, within PFR28_00680 at 724.436 kb on - strand, within PFR28_00680 at 724.436 kb on - strand, within PFR28_00680 at 724.493 kb on - strand, within PFR28_00680 at 724.567 kb on - strand, within PFR28_00680 at 724.669 kb on + strand, within PFR28_00680 at 724.669 kb on + strand, within PFR28_00680 at 724.669 kb on + strand, within PFR28_00680 at 724.669 kb on + strand, within PFR28_00680 at 724.669 kb on + strand, within PFR28_00680 at 724.670 kb on - strand, within PFR28_00680 at 724.670 kb on - strand, within PFR28_00680 at 724.670 kb on - strand, within PFR28_00680 at 724.670 kb on - strand, within PFR28_00680 at 724.670 kb on - strand, within PFR28_00680 at 724.670 kb on - strand, within PFR28_00680 at 724.670 kb on - strand, within PFR28_00680 at 724.670 kb on - strand, within PFR28_00680 at 724.794 kb on + strand at 724.795 kb on - strand at 724.833 kb on + strand at 724.833 kb on + strand at 724.833 kb on + strand at 724.833 kb on + strand at 724.833 kb on + strand at 724.834 kb on - strand at 724.834 kb on - strand at 724.834 kb on - strand at 724.834 kb on - strand at 724.834 kb on - strand at 724.834 kb on - strand at 724.922 kb on + strand at 724.922 kb on + strand at 724.922 kb on + strand at 724.922 kb on + strand at 724.923 kb on - strand at 724.923 kb on - strand at 724.946 kb on + strand at 724.946 kb on + strand at 724.946 kb on + strand at 724.946 kb on + strand at 724.946 kb on + strand at 724.946 kb on + strand at 724.946 kb on + strand at 724.946 kb on + strand at 724.946 kb on + strand at 724.946 kb on + strand at 724.946 kb on + strand at 724.946 kb on + strand at 724.946 kb on + strand at 724.946 kb on + strand at 724.947 kb on - strand at 724.947 kb on - strand at 724.947 kb on - strand at 724.947 kb on - strand at 724.947 kb on - strand at 724.947 kb on - strand at 724.947 kb on - strand at 724.947 kb on - strand at 724.947 kb on - strand at 725.060 kb on + strand, within PFR28_00681 at 725.060 kb on + strand, within PFR28_00681 at 725.060 kb on + strand, within PFR28_00681 at 725.060 kb on + strand, within PFR28_00681 at 725.061 kb on - strand, within PFR28_00681 at 725.090 kb on + strand, within PFR28_00681 at 725.090 kb on + strand, within PFR28_00681 at 725.091 kb on - strand, within PFR28_00681 at 725.091 kb on - strand, within PFR28_00681 at 725.091 kb on - strand, within PFR28_00681 at 725.091 kb on - strand, within PFR28_00681 at 725.123 kb on + strand, within PFR28_00681 at 725.315 kb on + strand, within PFR28_00681 at 725.316 kb on - strand, within PFR28_00681 at 725.462 kb on + strand, within PFR28_00681 at 725.462 kb on + strand, within PFR28_00681 at 725.495 kb on + strand, within PFR28_00681 at 725.495 kb on + strand, within PFR28_00681 at 725.495 kb on + strand, within PFR28_00681 at 725.496 kb on - strand, within PFR28_00681 at 725.496 kb on - strand, within PFR28_00681 at 725.496 kb on - strand, within PFR28_00681 at 725.629 kb on + strand, within PFR28_00681 at 725.629 kb on + strand, within PFR28_00681 at 725.629 kb on + strand, within PFR28_00681 at 725.639 kb on + strand, within PFR28_00681 at 725.639 kb on + strand, within PFR28_00681 at 725.639 kb on + strand, within PFR28_00681 at 725.639 kb on + strand, within PFR28_00681 at 725.639 kb on + strand, within PFR28_00681 at 725.640 kb on - strand, within PFR28_00681 at 725.640 kb on - strand, within PFR28_00681 at 725.640 kb on - strand, within PFR28_00681 at 725.669 kb on + strand, within PFR28_00681 at 725.669 kb on + strand, within PFR28_00681 at 725.669 kb on + strand, within PFR28_00681 at 725.669 kb on + strand, within PFR28_00681 at 725.669 kb on + strand, within PFR28_00681 at 725.669 kb on + strand, within PFR28_00681 at 725.669 kb on + strand, within PFR28_00681 at 725.669 kb on + strand, within PFR28_00681 at 725.669 kb on + strand, within PFR28_00681 at 725.669 kb on + strand, within PFR28_00681 at 725.669 kb on + strand, within PFR28_00681 at 725.669 kb on + strand, within PFR28_00681 at 725.670 kb on - strand, within PFR28_00681 at 725.670 kb on - strand, within PFR28_00681 at 725.670 kb on - strand, within PFR28_00681 at 725.670 kb on - strand, within PFR28_00681 at 725.670 kb on - strand, within PFR28_00681 at 725.670 kb on - strand, within PFR28_00681 at 725.670 kb on - strand, within PFR28_00681 at 725.670 kb on - strand, within PFR28_00681 at 725.670 kb on - strand, within PFR28_00681 at 725.845 kb on - strand at 725.863 kb on + strand at 725.864 kb on - strand at 725.864 kb on - strand at 725.864 kb on - strand at 725.943 kb on + strand at 725.943 kb on + strand at 725.944 kb on - strand at 725.944 kb on - strand at 725.944 kb on - strand at 725.944 kb on - strand at 725.944 kb on - strand at 725.944 kb on - strand at 726.018 kb on + strand, within PFR28_00682 at 726.018 kb on + strand, within PFR28_00682 at 726.018 kb on + strand, within PFR28_00682 at 726.018 kb on + strand, within PFR28_00682 at 726.018 kb on + strand, within PFR28_00682 at 726.018 kb on + strand, within PFR28_00682 at 726.019 kb on - strand, within PFR28_00682 at 726.019 kb on - strand, within PFR28_00682 at 726.019 kb on - strand, within PFR28_00682 at 726.019 kb on - strand, within PFR28_00682 at 726.019 kb on - strand, within PFR28_00682 at 726.019 kb on - strand, within PFR28_00682 at 726.019 kb on - strand, within PFR28_00682 at 726.019 kb on - strand, within PFR28_00682 at 726.019 kb on - strand, within PFR28_00682 at 726.024 kb on + strand, within PFR28_00682 at 726.024 kb on + strand, within PFR28_00682 at 726.024 kb on + strand, within PFR28_00682 at 726.025 kb on - strand, within PFR28_00682 at 726.025 kb on - strand, within PFR28_00682 at 726.025 kb on - strand, within PFR28_00682 at 726.025 kb on - strand, within PFR28_00682 at 726.134 kb on + strand at 726.134 kb on + strand at 726.134 kb on + strand at 726.134 kb on + strand at 726.135 kb on - strand at 726.135 kb on - strand at 726.144 kb on + strand at 726.145 kb on - strand at 726.145 kb on - strand at 726.145 kb on - strand at 726.153 kb on + strand at 726.217 kb on - strand at 726.217 kb on - strand at 726.232 kb on + strand at 726.232 kb on + strand at 726.252 kb on - strand at 726.355 kb on + strand at 726.355 kb on + strand at 726.355 kb on + strand at 726.356 kb on - strand at 726.356 kb on - strand at 726.356 kb on - strand at 726.356 kb on - strand at 726.492 kb on + strand, within PFR28_00683 at 726.493 kb on - strand, within PFR28_00683 at 726.514 kb on + strand, within PFR28_00683 at 726.515 kb on - strand, within PFR28_00683 at 726.515 kb on - strand, within PFR28_00683 at 726.760 kb on - strand, within PFR28_00683 at 726.760 kb on - strand, within PFR28_00683 at 726.760 kb on - strand, within PFR28_00683 at 726.760 kb on - strand, within PFR28_00683 at 726.760 kb on - strand, within PFR28_00683 at 726.760 kb on - strand, within PFR28_00683
Per-strain Table
Position Strand Gene LocusTag Fraction Citric Acid (C) 10 mM remove 723,922 - PFR28_00679 0.71 -2.5 724,081 + PFR28_00679 0.81 -2.6 724,159 - PFR28_00679 0.86 -1.4 724,159 - PFR28_00679 0.86 -1.4 724,312 + -1.8 724,312 + -1.6 724,313 - -1.9 724,314 + -1.7 724,315 - -1.8 724,315 - -2.9 724,315 - -2.4 724,315 - -1.7 724,315 - -2.7 724,315 - -1.7 724,350 + -2.8 724,350 + -3.0 724,351 - -2.4 724,351 - -2.4 724,367 - -0.9 724,431 + PFR28_00680 0.14 -1.9 724,431 + PFR28_00680 0.14 -2.6 724,431 + PFR28_00680 0.14 -1.9 724,432 - PFR28_00680 0.14 -2.1 724,432 - PFR28_00680 0.14 -1.7 724,432 - PFR28_00680 0.14 -2.5 724,432 - PFR28_00680 0.14 -3.0 724,432 - PFR28_00680 0.14 -1.9 724,432 - PFR28_00680 0.14 -3.8 724,432 - PFR28_00680 0.14 -1.5 724,435 + PFR28_00680 0.15 -1.8 724,435 + PFR28_00680 0.15 -1.9 724,436 - PFR28_00680 0.15 -1.6 724,436 - PFR28_00680 0.15 -0.5 724,436 - PFR28_00680 0.15 -2.0 724,493 - PFR28_00680 0.27 -3.7 724,567 - PFR28_00680 0.43 -1.4 724,669 + PFR28_00680 0.65 -2.5 724,669 + PFR28_00680 0.65 -1.0 724,669 + PFR28_00680 0.65 -1.6 724,669 + PFR28_00680 0.65 -2.1 724,669 + PFR28_00680 0.65 -2.0 724,670 - PFR28_00680 0.65 -0.4 724,670 - PFR28_00680 0.65 -2.1 724,670 - PFR28_00680 0.65 -2.1 724,670 - PFR28_00680 0.65 -2.0 724,670 - PFR28_00680 0.65 -0.8 724,670 - PFR28_00680 0.65 -1.6 724,670 - PFR28_00680 0.65 -0.7 724,670 - PFR28_00680 0.65 -3.7 724,794 + -3.1 724,795 - -1.9 724,833 + -1.1 724,833 + -1.1 724,833 + -1.4 724,833 + -3.3 724,833 + -2.9 724,834 - -3.0 724,834 - -1.1 724,834 - -1.6 724,834 - -1.8 724,834 - -2.4 724,834 - -1.3 724,922 + -3.2 724,922 + -4.4 724,922 + -2.1 724,922 + -4.4 724,923 - -2.9 724,923 - -4.3 724,946 + -3.2 724,946 + -5.8 724,946 + -5.0 724,946 + -5.6 724,946 + -4.7 724,946 + -2.4 724,946 + -3.7 724,946 + -3.2 724,946 + -2.7 724,946 + -3.9 724,946 + -4.3 724,946 + -3.1 724,946 + -2.0 724,946 + -3.1 724,947 - -4.3 724,947 - -5.3 724,947 - -3.0 724,947 - -4.0 724,947 - -2.1 724,947 - -3.8 724,947 - -2.9 724,947 - -4.0 724,947 - -0.4 725,060 + PFR28_00681 0.18 -1.6 725,060 + PFR28_00681 0.18 -1.8 725,060 + PFR28_00681 0.18 -4.3 725,060 + PFR28_00681 0.18 -4.0 725,061 - PFR28_00681 0.18 -1.1 725,090 + PFR28_00681 0.21 -4.9 725,090 + PFR28_00681 0.21 -4.6 725,091 - PFR28_00681 0.21 -3.4 725,091 - PFR28_00681 0.21 -3.8 725,091 - PFR28_00681 0.21 -4.3 725,091 - PFR28_00681 0.21 -3.7 725,123 + PFR28_00681 0.24 -4.6 725,315 + PFR28_00681 0.44 -2.7 725,316 - PFR28_00681 0.44 -5.2 725,462 + PFR28_00681 0.59 -5.1 725,462 + PFR28_00681 0.59 -1.8 725,495 + PFR28_00681 0.62 -4.0 725,495 + PFR28_00681 0.62 -4.5 725,495 + PFR28_00681 0.62 -1.1 725,496 - PFR28_00681 0.62 -3.3 725,496 - PFR28_00681 0.62 -3.7 725,496 - PFR28_00681 0.62 +1.2 725,629 + PFR28_00681 0.76 -3.4 725,629 + PFR28_00681 0.76 -2.6 725,629 + PFR28_00681 0.76 -4.3 725,639 + PFR28_00681 0.77 -3.6 725,639 + PFR28_00681 0.77 -5.2 725,639 + PFR28_00681 0.77 -1.7 725,639 + PFR28_00681 0.77 -3.2 725,639 + PFR28_00681 0.77 -1.4 725,640 - PFR28_00681 0.77 -2.5 725,640 - PFR28_00681 0.77 -3.7 725,640 - PFR28_00681 0.77 -2.0 725,669 + PFR28_00681 0.80 -2.5 725,669 + PFR28_00681 0.80 -3.5 725,669 + PFR28_00681 0.80 -5.0 725,669 + PFR28_00681 0.80 -5.2 725,669 + PFR28_00681 0.80 -3.6 725,669 + PFR28_00681 0.80 -4.3 725,669 + PFR28_00681 0.80 -2.6 725,669 + PFR28_00681 0.80 -5.4 725,669 + PFR28_00681 0.80 -5.2 725,669 + PFR28_00681 0.80 -2.9 725,669 + PFR28_00681 0.80 -4.4 725,669 + PFR28_00681 0.80 -4.1 725,670 - PFR28_00681 0.80 -4.6 725,670 - PFR28_00681 0.80 -2.0 725,670 - PFR28_00681 0.80 -1.6 725,670 - PFR28_00681 0.80 -4.4 725,670 - PFR28_00681 0.80 -4.3 725,670 - PFR28_00681 0.80 -3.0 725,670 - PFR28_00681 0.80 -1.6 725,670 - PFR28_00681 0.80 -2.4 725,670 - PFR28_00681 0.80 -3.1 725,845 - -1.6 725,863 + -3.0 725,864 - -1.7 725,864 - -3.6 725,864 - -0.6 725,943 + -1.3 725,943 + -0.3 725,944 - -0.1 725,944 - -1.1 725,944 - -0.5 725,944 - +0.8 725,944 - +0.1 725,944 - +1.7 726,018 + PFR28_00682 0.41 -2.3 726,018 + PFR28_00682 0.41 -0.8 726,018 + PFR28_00682 0.41 -0.5 726,018 + PFR28_00682 0.41 +1.0 726,018 + PFR28_00682 0.41 -1.2 726,018 + PFR28_00682 0.41 -2.8 726,019 - PFR28_00682 0.41 -0.9 726,019 - PFR28_00682 0.41 +0.2 726,019 - PFR28_00682 0.41 +0.2 726,019 - PFR28_00682 0.41 +0.4 726,019 - PFR28_00682 0.41 -1.2 726,019 - PFR28_00682 0.41 +0.2 726,019 - PFR28_00682 0.41 +0.8 726,019 - PFR28_00682 0.41 +0.3 726,019 - PFR28_00682 0.41 +1.8 726,024 + PFR28_00682 0.44 -2.4 726,024 + PFR28_00682 0.44 -1.9 726,024 + PFR28_00682 0.44 -3.5 726,025 - PFR28_00682 0.45 +0.1 726,025 - PFR28_00682 0.45 -2.7 726,025 - PFR28_00682 0.45 +0.6 726,025 - PFR28_00682 0.45 +0.3 726,134 + -2.7 726,134 + -2.2 726,134 + -4.5 726,134 + -2.9 726,135 - -1.3 726,135 - -1.0 726,144 + -2.1 726,145 - -0.1 726,145 - -0.4 726,145 - -0.8 726,153 + -0.5 726,217 - -0.0 726,217 - +0.7 726,232 + -3.1 726,232 + -3.5 726,252 - -1.1 726,355 + -1.9 726,355 + -3.5 726,355 + -2.1 726,356 - -4.1 726,356 - -0.8 726,356 - -3.6 726,356 - -1.8 726,492 + PFR28_00683 0.20 -4.5 726,493 - PFR28_00683 0.20 -4.1 726,514 + PFR28_00683 0.23 -5.1 726,515 - PFR28_00683 0.23 -5.0 726,515 - PFR28_00683 0.23 -1.6 726,760 - PFR28_00683 0.60 -4.4 726,760 - PFR28_00683 0.60 -2.8 726,760 - PFR28_00683 0.60 -2.5 726,760 - PFR28_00683 0.60 -1.8 726,760 - PFR28_00683 0.60 -3.9 726,760 - PFR28_00683 0.60 -3.1
Or see this region's nucleotide sequence