Experiment: Citric Acid (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00478 and PFR28_00479 are separated by 71 nucleotides PFR28_00479 and PFR28_00480 are separated by 4 nucleotides PFR28_00480 and PFR28_00481 are separated by 47 nucleotides PFR28_00481 and PFR28_00482 are separated by 91 nucleotides
PFR28_00478: PFR28_00478 - Transcriptional regulatory protein DegU, at 511,882 to 512,535
_00478
PFR28_00479: PFR28_00479 - Diacylglycerol kinase, at 512,607 to 512,972
_00479
PFR28_00480: PFR28_00480 - HTH-type transcriptional activator CmpR, at 512,977 to 513,978
_00480
PFR28_00481: PFR28_00481 - Ferredoxin--NADP reductase, at 514,026 to 514,805
_00481
PFR28_00482: PFR28_00482 - tRNA (adenine(37)-N6)-methyltransferase, at 514,897 to 515,595
_00482
Position (kb) 512
513
514 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 512.093 kb on + strand, within PFR28_00478 at 512.094 kb on - strand, within PFR28_00478 at 512.404 kb on + strand, within PFR28_00478 at 512.404 kb on + strand, within PFR28_00478 at 512.405 kb on - strand, within PFR28_00478 at 512.533 kb on + strand at 512.533 kb on + strand at 512.533 kb on + strand at 512.534 kb on - strand at 512.534 kb on - strand at 512.571 kb on + strand at 512.571 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.606 kb on + strand at 512.607 kb on - strand at 512.607 kb on - strand at 512.607 kb on - strand at 512.607 kb on - strand at 512.607 kb on - strand at 512.607 kb on - strand at 512.607 kb on - strand at 512.607 kb on - strand at 512.607 kb on - strand at 512.607 kb on - strand at 512.607 kb on - strand at 512.607 kb on - strand at 512.618 kb on + strand at 512.618 kb on + strand at 512.618 kb on + strand at 512.618 kb on + strand at 512.939 kb on + strand at 512.939 kb on + strand at 512.940 kb on - strand at 512.940 kb on - strand at 512.940 kb on - strand at 512.947 kb on + strand at 512.948 kb on - strand at 513.074 kb on + strand at 513.074 kb on + strand at 513.074 kb on + strand at 513.075 kb on - strand at 513.075 kb on - strand at 513.099 kb on - strand, within PFR28_00480 at 513.099 kb on - strand, within PFR28_00480 at 513.099 kb on - strand, within PFR28_00480 at 513.099 kb on - strand, within PFR28_00480 at 513.099 kb on - strand, within PFR28_00480 at 513.099 kb on - strand, within PFR28_00480 at 513.469 kb on + strand, within PFR28_00480 at 513.470 kb on - strand, within PFR28_00480 at 513.488 kb on + strand, within PFR28_00480 at 513.489 kb on - strand, within PFR28_00480 at 513.489 kb on - strand, within PFR28_00480 at 513.489 kb on - strand, within PFR28_00480 at 513.526 kb on + strand, within PFR28_00480 at 513.526 kb on + strand, within PFR28_00480 at 513.526 kb on + strand, within PFR28_00480 at 513.526 kb on + strand, within PFR28_00480 at 513.526 kb on + strand, within PFR28_00480 at 513.526 kb on + strand, within PFR28_00480 at 513.526 kb on + strand, within PFR28_00480 at 513.526 kb on + strand, within PFR28_00480 at 513.526 kb on + strand, within PFR28_00480 at 513.527 kb on - strand, within PFR28_00480 at 513.527 kb on - strand, within PFR28_00480 at 513.527 kb on - strand, within PFR28_00480 at 513.527 kb on - strand, within PFR28_00480 at 513.527 kb on - strand, within PFR28_00480 at 513.593 kb on + strand, within PFR28_00480 at 513.593 kb on + strand, within PFR28_00480 at 513.889 kb on + strand at 513.889 kb on + strand at 513.894 kb on + strand at 513.894 kb on + strand at 513.910 kb on - strand at 514.796 kb on - strand at 514.803 kb on + strand at 514.803 kb on + strand at 514.803 kb on + strand at 514.803 kb on + strand at 514.804 kb on - strand at 514.804 kb on - strand at 514.804 kb on - strand at 514.804 kb on - strand at 514.850 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Citric Acid (C) 10 mM remove 512,093 + PFR28_00478 0.32 -0.7 512,094 - PFR28_00478 0.32 -1.3 512,404 + PFR28_00478 0.80 +0.8 512,404 + PFR28_00478 0.80 -0.1 512,405 - PFR28_00478 0.80 -0.0 512,533 + +1.1 512,533 + -0.2 512,533 + +0.1 512,534 - -0.3 512,534 - -0.9 512,571 + -0.2 512,571 + -1.4 512,606 + +0.9 512,606 + +0.5 512,606 + -1.3 512,606 + +0.8 512,606 + -0.4 512,606 + +0.1 512,606 + -0.4 512,606 + +0.2 512,606 + -0.3 512,606 + -0.4 512,606 + -1.5 512,606 + -3.3 512,606 + -0.1 512,606 + +0.1 512,606 + -1.0 512,606 + -0.0 512,606 + -0.2 512,606 + -0.2 512,606 + +0.5 512,606 + +0.0 512,606 + -0.3 512,606 + -0.5 512,606 + +0.3 512,606 + +0.9 512,606 + +0.2 512,606 + -1.3 512,606 + -0.1 512,606 + -0.4 512,606 + +0.6 512,606 + +0.1 512,606 + -0.1 512,606 + -0.8 512,606 + -0.8 512,606 + +0.3 512,606 + +0.0 512,607 - +1.5 512,607 - -0.2 512,607 - -0.9 512,607 - -0.3 512,607 - +0.4 512,607 - -1.0 512,607 - +1.6 512,607 - +0.1 512,607 - -0.5 512,607 - +0.6 512,607 - -0.6 512,607 - -1.6 512,618 + -1.4 512,618 + -1.0 512,618 + -0.3 512,618 + -0.3 512,939 + -0.3 512,939 + -0.5 512,940 - -0.4 512,940 - +0.3 512,940 - -2.0 512,947 + +0.4 512,948 - -0.8 513,074 + -0.2 513,074 + -1.9 513,074 + -1.6 513,075 - -1.7 513,075 - -1.0 513,099 - PFR28_00480 0.12 -1.1 513,099 - PFR28_00480 0.12 -2.5 513,099 - PFR28_00480 0.12 -1.5 513,099 - PFR28_00480 0.12 -0.8 513,099 - PFR28_00480 0.12 -2.6 513,099 - PFR28_00480 0.12 -2.0 513,469 + PFR28_00480 0.49 -1.2 513,470 - PFR28_00480 0.49 -2.6 513,488 + PFR28_00480 0.51 +0.5 513,489 - PFR28_00480 0.51 +0.2 513,489 - PFR28_00480 0.51 -2.5 513,489 - PFR28_00480 0.51 -1.6 513,526 + PFR28_00480 0.55 -0.9 513,526 + PFR28_00480 0.55 +0.5 513,526 + PFR28_00480 0.55 +0.7 513,526 + PFR28_00480 0.55 -1.4 513,526 + PFR28_00480 0.55 -0.1 513,526 + PFR28_00480 0.55 -0.9 513,526 + PFR28_00480 0.55 -0.0 513,526 + PFR28_00480 0.55 +0.3 513,526 + PFR28_00480 0.55 -1.5 513,527 - PFR28_00480 0.55 -2.6 513,527 - PFR28_00480 0.55 -3.8 513,527 - PFR28_00480 0.55 -1.4 513,527 - PFR28_00480 0.55 -3.4 513,527 - PFR28_00480 0.55 -2.1 513,593 + PFR28_00480 0.61 +0.8 513,593 + PFR28_00480 0.61 -0.5 513,889 + +0.3 513,889 + -2.6 513,894 + -0.5 513,894 + +0.0 513,910 - -2.3 514,796 - -1.8 514,803 + -0.4 514,803 + -0.2 514,803 + +0.5 514,803 + -0.8 514,804 - +0.0 514,804 - -0.1 514,804 - -0.9 514,804 - +0.7 514,850 - +0.6
Or see this region's nucleotide sequence