Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1098

Experiment: m.b. Tetracycline 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1097 and Echvi_1098 are separated by 20 nucleotidesEchvi_1098 and Echvi_1099 are separated by 25 nucleotides Echvi_1097: Echvi_1097 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 1,256,787 to 1,257,878 _1097 Echvi_1098: Echvi_1098 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 1,257,899 to 1,259,290 _1098 Echvi_1099: Echvi_1099 - hypothetical protein, at 1,259,316 to 1,260,587 _1099 Position (kb) 1257 1258 1259 1260Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1256.977 kb on - strand, within Echvi_1097at 1257.095 kb on + strand, within Echvi_1097at 1257.095 kb on + strand, within Echvi_1097at 1257.096 kb on - strand, within Echvi_1097at 1257.096 kb on - strand, within Echvi_1097at 1257.098 kb on + strand, within Echvi_1097at 1257.098 kb on + strand, within Echvi_1097at 1257.099 kb on - strand, within Echvi_1097at 1257.099 kb on - strand, within Echvi_1097at 1257.100 kb on + strand, within Echvi_1097at 1257.100 kb on + strand, within Echvi_1097at 1257.100 kb on + strand, within Echvi_1097at 1257.101 kb on - strand, within Echvi_1097at 1257.101 kb on - strand, within Echvi_1097at 1257.101 kb on - strand, within Echvi_1097at 1257.139 kb on - strand, within Echvi_1097at 1257.139 kb on - strand, within Echvi_1097at 1257.241 kb on - strand, within Echvi_1097at 1257.433 kb on + strand, within Echvi_1097at 1257.515 kb on + strand, within Echvi_1097at 1257.556 kb on + strand, within Echvi_1097at 1257.556 kb on + strand, within Echvi_1097at 1257.556 kb on + strand, within Echvi_1097at 1257.556 kb on + strand, within Echvi_1097at 1257.556 kb on + strand, within Echvi_1097at 1257.556 kb on + strand, within Echvi_1097at 1257.556 kb on + strand, within Echvi_1097at 1257.557 kb on - strand, within Echvi_1097at 1257.558 kb on + strand, within Echvi_1097at 1257.559 kb on - strand, within Echvi_1097at 1257.600 kb on - strand, within Echvi_1097at 1257.694 kb on + strand, within Echvi_1097at 1257.695 kb on - strand, within Echvi_1097at 1257.695 kb on - strand, within Echvi_1097at 1257.728 kb on + strand, within Echvi_1097at 1257.732 kb on + strand, within Echvi_1097at 1257.733 kb on - strand, within Echvi_1097at 1257.733 kb on - strand, within Echvi_1097at 1257.843 kb on + strandat 1257.844 kb on - strandat 1257.920 kb on - strandat 1257.933 kb on + strandat 1257.934 kb on - strandat 1257.957 kb on + strandat 1257.958 kb on - strandat 1257.958 kb on - strandat 1257.996 kb on + strandat 1257.997 kb on - strandat 1257.997 kb on - strandat 1258.015 kb on + strandat 1258.084 kb on - strand, within Echvi_1098at 1258.171 kb on + strand, within Echvi_1098at 1258.182 kb on + strand, within Echvi_1098at 1258.182 kb on + strand, within Echvi_1098at 1258.183 kb on - strand, within Echvi_1098at 1258.183 kb on - strand, within Echvi_1098at 1258.183 kb on - strand, within Echvi_1098at 1258.191 kb on + strand, within Echvi_1098at 1258.191 kb on + strand, within Echvi_1098at 1258.191 kb on + strand, within Echvi_1098at 1258.192 kb on - strand, within Echvi_1098at 1258.192 kb on - strand, within Echvi_1098at 1258.220 kb on - strand, within Echvi_1098at 1258.308 kb on + strand, within Echvi_1098at 1258.309 kb on - strand, within Echvi_1098at 1258.472 kb on + strand, within Echvi_1098at 1258.473 kb on - strand, within Echvi_1098at 1258.479 kb on + strand, within Echvi_1098at 1258.479 kb on + strand, within Echvi_1098at 1258.480 kb on - strand, within Echvi_1098at 1258.541 kb on + strand, within Echvi_1098at 1258.549 kb on - strand, within Echvi_1098at 1258.549 kb on - strand, within Echvi_1098at 1258.554 kb on + strand, within Echvi_1098at 1258.554 kb on + strand, within Echvi_1098at 1258.555 kb on - strand, within Echvi_1098at 1258.555 kb on - strand, within Echvi_1098at 1258.555 kb on - strand, within Echvi_1098at 1258.555 kb on - strand, within Echvi_1098at 1258.607 kb on + strand, within Echvi_1098at 1258.653 kb on + strand, within Echvi_1098at 1258.689 kb on + strand, within Echvi_1098at 1258.702 kb on - strand, within Echvi_1098at 1258.702 kb on - strand, within Echvi_1098at 1258.702 kb on - strand, within Echvi_1098at 1258.760 kb on - strand, within Echvi_1098at 1258.760 kb on - strand, within Echvi_1098at 1258.762 kb on - strand, within Echvi_1098at 1258.828 kb on + strand, within Echvi_1098at 1258.873 kb on + strand, within Echvi_1098at 1258.874 kb on - strand, within Echvi_1098at 1259.144 kb on + strand, within Echvi_1098at 1259.249 kb on + strandat 1259.250 kb on - strandat 1259.250 kb on - strandat 1259.250 kb on - strandat 1259.283 kb on + strandat 1259.283 kb on + strandat 1259.283 kb on + strandat 1259.284 kb on - strandat 1259.299 kb on + strandat 1259.300 kb on - strandat 1259.307 kb on + strandat 1259.317 kb on + strandat 1259.318 kb on - strandat 1259.318 kb on - strandat 1259.318 kb on - strandat 1259.335 kb on - strandat 1259.339 kb on + strandat 1259.479 kb on + strand, within Echvi_1099at 1259.479 kb on + strand, within Echvi_1099at 1259.479 kb on + strand, within Echvi_1099at 1259.480 kb on - strand, within Echvi_1099at 1259.480 kb on - strand, within Echvi_1099at 1259.480 kb on - strand, within Echvi_1099at 1259.481 kb on + strand, within Echvi_1099at 1259.481 kb on + strand, within Echvi_1099at 1259.481 kb on + strand, within Echvi_1099at 1259.481 kb on + strand, within Echvi_1099at 1259.481 kb on + strand, within Echvi_1099at 1259.481 kb on + strand, within Echvi_1099at 1259.481 kb on + strand, within Echvi_1099at 1259.482 kb on - strand, within Echvi_1099at 1259.482 kb on - strand, within Echvi_1099at 1259.482 kb on - strand, within Echvi_1099at 1259.482 kb on - strand, within Echvi_1099at 1259.490 kb on + strand, within Echvi_1099at 1259.536 kb on + strand, within Echvi_1099at 1259.615 kb on - strand, within Echvi_1099at 1259.631 kb on + strand, within Echvi_1099at 1259.631 kb on + strand, within Echvi_1099at 1259.631 kb on + strand, within Echvi_1099at 1259.631 kb on + strand, within Echvi_1099at 1259.631 kb on + strand, within Echvi_1099at 1259.631 kb on + strand, within Echvi_1099at 1259.631 kb on + strand, within Echvi_1099at 1259.632 kb on - strand, within Echvi_1099at 1259.632 kb on - strand, within Echvi_1099at 1259.632 kb on - strand, within Echvi_1099at 1259.653 kb on - strand, within Echvi_1099at 1259.657 kb on - strand, within Echvi_1099at 1259.662 kb on + strand, within Echvi_1099at 1259.663 kb on - strand, within Echvi_1099at 1259.663 kb on - strand, within Echvi_1099at 1259.732 kb on + strand, within Echvi_1099at 1259.732 kb on + strand, within Echvi_1099at 1259.755 kb on + strand, within Echvi_1099at 1259.805 kb on - strand, within Echvi_1099at 1259.805 kb on - strand, within Echvi_1099at 1259.857 kb on + strand, within Echvi_1099at 1259.857 kb on + strand, within Echvi_1099at 1259.858 kb on - strand, within Echvi_1099at 1259.858 kb on - strand, within Echvi_1099at 1259.861 kb on - strand, within Echvi_1099at 1259.874 kb on + strand, within Echvi_1099at 1259.875 kb on - strand, within Echvi_1099at 1259.875 kb on - strand, within Echvi_1099at 1259.895 kb on + strand, within Echvi_1099at 1259.895 kb on + strand, within Echvi_1099at 1259.895 kb on + strand, within Echvi_1099at 1259.937 kb on - strand, within Echvi_1099at 1260.016 kb on + strand, within Echvi_1099at 1260.017 kb on - strand, within Echvi_1099at 1260.029 kb on + strand, within Echvi_1099at 1260.030 kb on - strand, within Echvi_1099at 1260.030 kb on - strand, within Echvi_1099at 1260.031 kb on + strand, within Echvi_1099at 1260.032 kb on - strand, within Echvi_1099at 1260.042 kb on + strand, within Echvi_1099at 1260.043 kb on - strand, within Echvi_1099at 1260.048 kb on - strand, within Echvi_1099at 1260.048 kb on - strand, within Echvi_1099at 1260.050 kb on - strand, within Echvi_1099at 1260.073 kb on - strand, within Echvi_1099at 1260.073 kb on - strand, within Echvi_1099at 1260.073 kb on - strand, within Echvi_1099at 1260.073 kb on - strand, within Echvi_1099at 1260.107 kb on + strand, within Echvi_1099at 1260.109 kb on + strand, within Echvi_1099at 1260.121 kb on - strand, within Echvi_1099at 1260.121 kb on - strand, within Echvi_1099at 1260.224 kb on + strand, within Echvi_1099at 1260.229 kb on + strand, within Echvi_1099at 1260.229 kb on + strand, within Echvi_1099at 1260.229 kb on + strand, within Echvi_1099at 1260.229 kb on + strand, within Echvi_1099

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.06 mg/ml
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1,256,977 - Echvi_1097 0.17 +3.3
1,257,095 + Echvi_1097 0.28 +0.4
1,257,095 + Echvi_1097 0.28 +0.3
1,257,096 - Echvi_1097 0.28 +1.1
1,257,096 - Echvi_1097 0.28 -0.4
1,257,098 + Echvi_1097 0.28 -1.0
1,257,098 + Echvi_1097 0.28 -1.6
1,257,099 - Echvi_1097 0.29 -0.8
1,257,099 - Echvi_1097 0.29 -1.6
1,257,100 + Echvi_1097 0.29 +0.8
1,257,100 + Echvi_1097 0.29 +2.7
1,257,100 + Echvi_1097 0.29 -1.0
1,257,101 - Echvi_1097 0.29 -1.0
1,257,101 - Echvi_1097 0.29 -1.2
1,257,101 - Echvi_1097 0.29 +0.4
1,257,139 - Echvi_1097 0.32 +0.2
1,257,139 - Echvi_1097 0.32 -0.2
1,257,241 - Echvi_1097 0.42 +0.3
1,257,433 + Echvi_1097 0.59 -2.1
1,257,515 + Echvi_1097 0.67 -0.7
1,257,556 + Echvi_1097 0.70 +0.2
1,257,556 + Echvi_1097 0.70 -1.0
1,257,556 + Echvi_1097 0.70 +0.9
1,257,556 + Echvi_1097 0.70 +1.0
1,257,556 + Echvi_1097 0.70 -0.1
1,257,556 + Echvi_1097 0.70 +0.6
1,257,556 + Echvi_1097 0.70 -0.7
1,257,557 - Echvi_1097 0.71 +0.2
1,257,558 + Echvi_1097 0.71 +1.2
1,257,559 - Echvi_1097 0.71 -0.5
1,257,600 - Echvi_1097 0.74 +0.3
1,257,694 + Echvi_1097 0.83 +1.7
1,257,695 - Echvi_1097 0.83 -0.9
1,257,695 - Echvi_1097 0.83 -1.0
1,257,728 + Echvi_1097 0.86 -0.0
1,257,732 + Echvi_1097 0.87 -1.8
1,257,733 - Echvi_1097 0.87 +0.6
1,257,733 - Echvi_1097 0.87 +1.1
1,257,843 + +1.1
1,257,844 - -0.6
1,257,920 - +1.5
1,257,933 + -0.5
1,257,934 - -0.7
1,257,957 + +0.7
1,257,958 - +0.1
1,257,958 - -1.4
1,257,996 + +1.0
1,257,997 - -0.3
1,257,997 - -1.5
1,258,015 + -1.3
1,258,084 - Echvi_1098 0.13 +1.4
1,258,171 + Echvi_1098 0.20 +0.0
1,258,182 + Echvi_1098 0.20 +0.2
1,258,182 + Echvi_1098 0.20 +0.2
1,258,183 - Echvi_1098 0.20 -1.5
1,258,183 - Echvi_1098 0.20 -1.0
1,258,183 - Echvi_1098 0.20 -1.9
1,258,191 + Echvi_1098 0.21 +0.0
1,258,191 + Echvi_1098 0.21 +1.1
1,258,191 + Echvi_1098 0.21 -0.3
1,258,192 - Echvi_1098 0.21 -0.4
1,258,192 - Echvi_1098 0.21 -1.1
1,258,220 - Echvi_1098 0.23 +0.6
1,258,308 + Echvi_1098 0.29 -0.2
1,258,309 - Echvi_1098 0.29 +0.4
1,258,472 + Echvi_1098 0.41 +0.4
1,258,473 - Echvi_1098 0.41 +0.2
1,258,479 + Echvi_1098 0.42 -1.5
1,258,479 + Echvi_1098 0.42 +0.5
1,258,480 - Echvi_1098 0.42 -0.3
1,258,541 + Echvi_1098 0.46 +0.1
1,258,549 - Echvi_1098 0.47 -1.2
1,258,549 - Echvi_1098 0.47 -0.9
1,258,554 + Echvi_1098 0.47 -1.3
1,258,554 + Echvi_1098 0.47 -0.9
1,258,555 - Echvi_1098 0.47 -1.8
1,258,555 - Echvi_1098 0.47 -0.6
1,258,555 - Echvi_1098 0.47 -1.9
1,258,555 - Echvi_1098 0.47 -1.1
1,258,607 + Echvi_1098 0.51 +0.1
1,258,653 + Echvi_1098 0.54 -2.1
1,258,689 + Echvi_1098 0.57 -0.3
1,258,702 - Echvi_1098 0.58 +0.3
1,258,702 - Echvi_1098 0.58 +0.4
1,258,702 - Echvi_1098 0.58 -1.0
1,258,760 - Echvi_1098 0.62 +0.0
1,258,760 - Echvi_1098 0.62 -0.3
1,258,762 - Echvi_1098 0.62 -0.7
1,258,828 + Echvi_1098 0.67 -2.6
1,258,873 + Echvi_1098 0.70 -0.3
1,258,874 - Echvi_1098 0.70 +0.2
1,259,144 + Echvi_1098 0.89 +0.8
1,259,249 + -0.0
1,259,250 - -0.1
1,259,250 - +0.2
1,259,250 - -1.6
1,259,283 + -0.6
1,259,283 + +0.7
1,259,283 + -0.9
1,259,284 - -0.6
1,259,299 + -0.4
1,259,300 - -1.5
1,259,307 + -0.1
1,259,317 + +0.0
1,259,318 - -3.6
1,259,318 - -2.6
1,259,318 - +0.0
1,259,335 - +0.7
1,259,339 + +1.1
1,259,479 + Echvi_1099 0.13 -0.8
1,259,479 + Echvi_1099 0.13 -0.2
1,259,479 + Echvi_1099 0.13 -0.1
1,259,480 - Echvi_1099 0.13 +0.7
1,259,480 - Echvi_1099 0.13 -0.9
1,259,480 - Echvi_1099 0.13 -1.1
1,259,481 + Echvi_1099 0.13 +0.4
1,259,481 + Echvi_1099 0.13 -0.4
1,259,481 + Echvi_1099 0.13 +0.3
1,259,481 + Echvi_1099 0.13 -2.3
1,259,481 + Echvi_1099 0.13 -0.4
1,259,481 + Echvi_1099 0.13 -0.2
1,259,481 + Echvi_1099 0.13 +0.3
1,259,482 - Echvi_1099 0.13 -0.7
1,259,482 - Echvi_1099 0.13 +0.1
1,259,482 - Echvi_1099 0.13 -0.5
1,259,482 - Echvi_1099 0.13 -0.9
1,259,490 + Echvi_1099 0.14 +1.7
1,259,536 + Echvi_1099 0.17 -0.6
1,259,615 - Echvi_1099 0.24 +0.1
1,259,631 + Echvi_1099 0.25 -0.0
1,259,631 + Echvi_1099 0.25 +0.1
1,259,631 + Echvi_1099 0.25 +0.8
1,259,631 + Echvi_1099 0.25 -0.8
1,259,631 + Echvi_1099 0.25 +0.0
1,259,631 + Echvi_1099 0.25 -0.2
1,259,631 + Echvi_1099 0.25 -0.5
1,259,632 - Echvi_1099 0.25 -0.7
1,259,632 - Echvi_1099 0.25 +0.7
1,259,632 - Echvi_1099 0.25 -0.3
1,259,653 - Echvi_1099 0.26 -0.6
1,259,657 - Echvi_1099 0.27 -1.9
1,259,662 + Echvi_1099 0.27 -0.5
1,259,663 - Echvi_1099 0.27 -0.2
1,259,663 - Echvi_1099 0.27 -0.9
1,259,732 + Echvi_1099 0.33 -1.0
1,259,732 + Echvi_1099 0.33 -0.9
1,259,755 + Echvi_1099 0.35 +0.7
1,259,805 - Echvi_1099 0.38 +0.3
1,259,805 - Echvi_1099 0.38 -0.1
1,259,857 + Echvi_1099 0.43 +0.1
1,259,857 + Echvi_1099 0.43 -0.0
1,259,858 - Echvi_1099 0.43 -0.6
1,259,858 - Echvi_1099 0.43 +0.6
1,259,861 - Echvi_1099 0.43 +0.6
1,259,874 + Echvi_1099 0.44 +0.3
1,259,875 - Echvi_1099 0.44 +0.0
1,259,875 - Echvi_1099 0.44 +1.3
1,259,895 + Echvi_1099 0.46 +0.1
1,259,895 + Echvi_1099 0.46 +1.7
1,259,895 + Echvi_1099 0.46 +0.8
1,259,937 - Echvi_1099 0.49 +0.0
1,260,016 + Echvi_1099 0.55 +0.2
1,260,017 - Echvi_1099 0.55 -2.5
1,260,029 + Echvi_1099 0.56 +0.6
1,260,030 - Echvi_1099 0.56 +3.0
1,260,030 - Echvi_1099 0.56 -0.2
1,260,031 + Echvi_1099 0.56 +0.7
1,260,032 - Echvi_1099 0.56 -0.3
1,260,042 + Echvi_1099 0.57 -1.1
1,260,043 - Echvi_1099 0.57 -0.3
1,260,048 - Echvi_1099 0.58 +0.4
1,260,048 - Echvi_1099 0.58 +1.2
1,260,050 - Echvi_1099 0.58 -0.4
1,260,073 - Echvi_1099 0.60 -1.0
1,260,073 - Echvi_1099 0.60 -1.9
1,260,073 - Echvi_1099 0.60 +0.2
1,260,073 - Echvi_1099 0.60 -2.4
1,260,107 + Echvi_1099 0.62 -1.0
1,260,109 + Echvi_1099 0.62 -0.2
1,260,121 - Echvi_1099 0.63 -0.6
1,260,121 - Echvi_1099 0.63 +2.4
1,260,224 + Echvi_1099 0.71 -0.4
1,260,229 + Echvi_1099 0.72 +0.2
1,260,229 + Echvi_1099 0.72 +0.1
1,260,229 + Echvi_1099 0.72 -0.3
1,260,229 + Echvi_1099 0.72 +0.8

Or see this region's nucleotide sequence