Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0642 and Atu0643 are separated by 22 nucleotides Atu0643 and Atu0644 are separated by 100 nucleotides
Atu0642: Atu0642 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 628,400 to 629,677
Atu0642
Atu0643: Atu0643 - hypothetical protein, at 629,700 to 631,637
Atu0643
Atu0644: Atu0644 - glycyl-tRNA synthetase, beta chain, at 631,738 to 633,891
Atu0644
Position (kb) 629
630
631
632 Strain fitness (log2 ratio) -2
-1
0
1 at 629.650 kb on + strand at 629.691 kb on + strand at 629.721 kb on - strand at 629.721 kb on - strand at 629.734 kb on + strand at 629.802 kb on - strand at 629.946 kb on + strand, within Atu0643 at 629.947 kb on - strand, within Atu0643 at 630.071 kb on + strand, within Atu0643 at 630.072 kb on + strand, within Atu0643 at 630.144 kb on + strand, within Atu0643 at 630.250 kb on + strand, within Atu0643 at 630.253 kb on - strand, within Atu0643 at 630.264 kb on - strand, within Atu0643 at 630.344 kb on + strand, within Atu0643 at 630.344 kb on + strand, within Atu0643 at 630.344 kb on + strand, within Atu0643 at 630.344 kb on + strand, within Atu0643 at 630.352 kb on - strand, within Atu0643 at 630.373 kb on - strand, within Atu0643 at 630.374 kb on - strand, within Atu0643 at 630.477 kb on - strand, within Atu0643 at 630.481 kb on + strand, within Atu0643 at 630.491 kb on + strand, within Atu0643 at 630.512 kb on + strand, within Atu0643 at 630.592 kb on - strand, within Atu0643 at 630.631 kb on - strand, within Atu0643 at 630.632 kb on - strand, within Atu0643 at 630.632 kb on - strand, within Atu0643 at 630.699 kb on + strand, within Atu0643 at 630.723 kb on + strand, within Atu0643 at 630.725 kb on + strand, within Atu0643 at 630.814 kb on - strand, within Atu0643 at 630.882 kb on + strand, within Atu0643 at 630.957 kb on + strand, within Atu0643 at 631.006 kb on + strand, within Atu0643 at 631.059 kb on + strand, within Atu0643 at 631.264 kb on - strand, within Atu0643 at 631.354 kb on - strand, within Atu0643 at 631.359 kb on - strand, within Atu0643 at 631.359 kb on - strand, within Atu0643 at 631.362 kb on - strand, within Atu0643 at 631.400 kb on - strand, within Atu0643 at 631.509 kb on + strand at 631.527 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 629,650 + +0.3 629,691 + -0.7 629,721 - +0.2 629,721 - +0.5 629,734 + -0.4 629,802 - +0.1 629,946 + Atu0643 0.13 +1.0 629,947 - Atu0643 0.13 -0.3 630,071 + Atu0643 0.19 -0.5 630,072 + Atu0643 0.19 +1.3 630,144 + Atu0643 0.23 -0.9 630,250 + Atu0643 0.28 +0.1 630,253 - Atu0643 0.29 +0.6 630,264 - Atu0643 0.29 -1.3 630,344 + Atu0643 0.33 +0.3 630,344 + Atu0643 0.33 -0.1 630,344 + Atu0643 0.33 -1.7 630,344 + Atu0643 0.33 -0.3 630,352 - Atu0643 0.34 -0.4 630,373 - Atu0643 0.35 -0.2 630,374 - Atu0643 0.35 +0.4 630,477 - Atu0643 0.40 +0.3 630,481 + Atu0643 0.40 +0.1 630,491 + Atu0643 0.41 -0.3 630,512 + Atu0643 0.42 -0.4 630,592 - Atu0643 0.46 +0.9 630,631 - Atu0643 0.48 -1.2 630,632 - Atu0643 0.48 -0.3 630,632 - Atu0643 0.48 -0.7 630,699 + Atu0643 0.52 -0.2 630,723 + Atu0643 0.53 +0.0 630,725 + Atu0643 0.53 -0.6 630,814 - Atu0643 0.57 +0.1 630,882 + Atu0643 0.61 -0.0 630,957 + Atu0643 0.65 +0.7 631,006 + Atu0643 0.67 -0.1 631,059 + Atu0643 0.70 +0.2 631,264 - Atu0643 0.81 +0.1 631,354 - Atu0643 0.85 +0.1 631,359 - Atu0643 0.86 -0.2 631,359 - Atu0643 0.86 +0.0 631,362 - Atu0643 0.86 -2.0 631,400 - Atu0643 0.88 -0.4 631,509 + +1.0 631,527 - +1.3
Or see this region's nucleotide sequence