Strain Fitness in Escherichia coli BW25113 around b3566

Experiment: Nickel (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nickel (II) chloride 1 mM
3,728,200	-	xylA	b3565	0.55	-0.2
3,728,200	-	xylA	b3565	0.55	-0.3
3,728,332	-	xylA	b3565	0.65	-1.0
3,728,332	-	xylA	b3565	0.65	+0.3
3,728,364	+	xylA	b3565	0.68	+1.0
3,728,364	+	xylA	b3565	0.68	-1.3
3,728,365	-	xylA	b3565	0.68	+0.5
3,728,390	+	xylA	b3565	0.70	+1.1
3,728,390	+	xylA	b3565	0.70	+2.1
3,728,416	-	xylA	b3565	0.72	+0.2
3,728,471	-	xylA	b3565	0.76	+0.6
3,728,558	+	xylA	b3565	0.83	-0.3
3,728,564	-	xylA	b3565	0.83	+0.3
3,728,568	+	xylA	b3565	0.83	-2.5
3,728,576	-	xylA	b3565	0.84	-0.1
3,728,577	-	xylA	b3565	0.84	-0.0
3,728,589	+	xylA	b3565	0.85	-0.4
3,728,607	-	xylA	b3565	0.86	-0.4
3,728,607	-	xylA	b3565	0.86	-0.1
3,728,607	-	xylA	b3565	0.86	-0.7
3,728,607	-	xylA	b3565	0.86	+0.2
3,728,612	-	xylA	b3565	0.87	+0.5
3,728,613	-	xylA	b3565	0.87	-0.0
3,728,617	-	xylA	b3565	0.87	-0.3
3,728,617	-	xylA	b3565	0.87	-0.2
3,728,649	-	xylA	b3565	0.89	-0.1
3,728,666	+				-0.3
3,728,666	+				-0.4
3,728,669	-				-0.1
3,728,671	+				+0.1
3,728,674	-				+0.3
3,728,685	+				-0.2
3,728,685	+				+1.1
3,728,687	-				+0.0
3,728,689	+				+2.1
3,728,689	+				+0.0
3,728,705	+				+0.1
3,728,705	+				-1.4
3,728,728	+				-0.2
3,728,729	+				-1.0
3,728,736	-				+1.7
3,728,736	-				+2.3
3,728,747	+				-0.3
3,728,747	+				+0.5
3,728,747	+				+0.7
3,728,747	+				+0.7
3,728,755	-				-0.0
3,728,755	-				-0.7
3,728,755	-				+0.0
3,728,755	-				+1.3
3,728,760	+				+1.1
3,728,770	+				+0.0
3,728,770	+				+0.2
3,728,770	+				-0.1
3,728,775	+				+0.5
3,728,805	+				+0.4
3,728,805	+				+1.0
3,728,805	+				+0.3
3,728,805	+				+0.1
3,728,813	-				-0.6
3,728,819	-				-0.4
3,728,824	+				-0.0
3,728,824	+				+0.1
3,728,837	+				-0.9
3,728,837	+				+1.0
3,728,839	+				+1.9
3,728,849	+				-0.0
3,728,849	+				-0.2
3,728,850	+				+0.4
3,728,883	+				+0.3
3,729,101	-				+0.1
3,729,102	+				-0.4
3,729,110	-				-0.2
3,729,121	-				+0.3
3,729,124	-				-0.6
3,729,140	-				-0.6
3,729,140	-				+0.5
3,729,152	-				-0.5
3,729,152	-				+0.2
3,729,152	-				-1.2
3,729,175	-				-0.3
3,729,188	-				-0.0
3,729,188	-				-0.5
3,729,191	-				+0.5
3,729,201	+				-0.3
3,729,203	-				+0.5
3,729,206	+				-0.0
3,729,214	+				-0.7
3,729,214	-				+0.1
3,729,236	+				+0.4
3,729,258	+	xylF	b3566	0.10	+0.1
3,729,258	+	xylF	b3566	0.10	+0.4
3,729,260	+	xylF	b3566	0.11	+1.1
3,729,260	+	xylF	b3566	0.11	+0.1
3,729,346	+	xylF	b3566	0.19	-2.5
3,729,351	+	xylF	b3566	0.20	-1.7
3,729,441	-	xylF	b3566	0.29	-0.2
3,729,446	+	xylF	b3566	0.29	-0.2
3,729,448	+	xylF	b3566	0.30	-0.5
3,729,490	-	xylF	b3566	0.34	+0.3
3,729,492	-	xylF	b3566	0.34	+0.2
3,729,492	-	xylF	b3566	0.34	+0.4
3,729,492	-	xylF	b3566	0.34	+0.8
3,729,504	-	xylF	b3566	0.35	+0.6
3,729,573	+	xylF	b3566	0.42	-0.1
3,729,581	-	xylF	b3566	0.43	+0.0
3,729,583	-	xylF	b3566	0.43	-0.3
3,729,600	-	xylF	b3566	0.45	+0.6
3,729,612	-	xylF	b3566	0.46	+0.8
3,729,612	-	xylF	b3566	0.46	-2.3
3,729,619	+	xylF	b3566	0.47	+1.4
3,729,619	+	xylF	b3566	0.47	-0.1
3,729,622	+	xylF	b3566	0.47	+1.1
3,729,622	+	xylF	b3566	0.47	-0.7
3,729,622	+	xylF	b3566	0.47	+1.1
3,729,627	-	xylF	b3566	0.48	+1.1
3,729,627	-	xylF	b3566	0.48	+1.0
3,729,627	-	xylF	b3566	0.48	-0.8
3,729,635	-	xylF	b3566	0.48	+0.4
3,729,642	+	xylF	b3566	0.49	-0.5
3,729,645	-	xylF	b3566	0.49	+1.4
3,729,645	-	xylF	b3566	0.49	+0.8
3,729,647	+	xylF	b3566	0.50	-0.2
3,729,650	-	xylF	b3566	0.50	+0.7
3,729,650	-	xylF	b3566	0.50	-0.8
3,729,650	-	xylF	b3566	0.50	+0.0
3,729,650	-	xylF	b3566	0.50	+0.1
3,729,666	+	xylF	b3566	0.52	-0.1
3,729,674	-	xylF	b3566	0.52	-1.2
3,729,674	-	xylF	b3566	0.52	+1.1
3,729,714	-	xylF	b3566	0.56	+1.0
3,729,714	-	xylF	b3566	0.56	+0.0
3,729,718	+	xylF	b3566	0.57	-1.7
3,729,718	+	xylF	b3566	0.57	+0.3
3,729,718	+	xylF	b3566	0.57	+1.1
3,729,718	+	xylF	b3566	0.57	+0.3
3,729,719	-	xylF	b3566	0.57	-1.2
3,729,719	-	xylF	b3566	0.57	+0.1
3,729,725	-	xylF	b3566	0.58	+0.2
3,729,726	-	xylF	b3566	0.58	-0.9
3,729,726	-	xylF	b3566	0.58	-0.7
3,729,726	-	xylF	b3566	0.58	+0.8
3,729,726	-	xylF	b3566	0.58	+0.4
3,729,736	-	xylF	b3566	0.59	+1.0
3,729,736	-	xylF	b3566	0.59	-0.9
3,729,793	+	xylF	b3566	0.64	+0.9
3,729,793	+	xylF	b3566	0.64	-0.2
3,729,799	-	xylF	b3566	0.65	-1.3
3,729,811	-	xylF	b3566	0.66	-1.3
3,729,811	-	xylF	b3566	0.66	+0.7
3,729,816	+	xylF	b3566	0.67	-0.2
3,729,817	+	xylF	b3566	0.67	+0.1
3,729,817	+	xylF	b3566	0.67	-0.7
3,729,817	+	xylF	b3566	0.67	-0.5
3,729,817	+	xylF	b3566	0.67	-0.0
3,729,825	-	xylF	b3566	0.68	-2.8
3,729,825	-	xylF	b3566	0.68	-0.6
3,729,830	-	xylF	b3566	0.68	-0.6
3,729,830	-	xylF	b3566	0.68	-0.1
3,729,831	+	xylF	b3566	0.68	+0.0
3,729,832	+	xylF	b3566	0.68	+0.3
3,729,832	+	xylF	b3566	0.68	+0.4
3,729,837	+	xylF	b3566	0.69	+1.4
3,729,837	+	xylF	b3566	0.69	+1.5
3,729,845	-	xylF	b3566	0.70	+0.3
3,729,845	-	xylF	b3566	0.70	+0.7
3,729,845	-	xylF	b3566	0.70	+1.0
3,729,854	+	xylF	b3566	0.70	-0.0
3,729,875	+	xylF	b3566	0.73	+0.1
3,729,885	+	xylF	b3566	0.74	+0.4
3,729,885	+	xylF	b3566	0.74	+1.0
3,729,885	+	xylF	b3566	0.74	-0.3
3,729,895	+	xylF	b3566	0.75	-0.1
3,729,912	-	xylF	b3566	0.76	+1.0
3,729,916	+	xylF	b3566	0.77	-0.5
3,729,930	+	xylF	b3566	0.78	-0.2
3,729,930	+	xylF	b3566	0.78	+0.3
3,729,930	+	xylF	b3566	0.78	-0.5
3,729,938	-	xylF	b3566	0.79	-0.3
3,729,940	+	xylF	b3566	0.79	-0.2
3,729,940	+	xylF	b3566	0.79	+0.3
3,729,940	+	xylF	b3566	0.79	+1.1
3,729,942	+	xylF	b3566	0.79	+0.7
3,729,949	-	xylF	b3566	0.80	+0.4
3,729,949	-	xylF	b3566	0.80	-0.3
3,729,949	-	xylF	b3566	0.80	+0.2
3,729,949	-	xylF	b3566	0.80	+0.1
3,729,949	-	xylF	b3566	0.80	-0.5
3,729,991	+	xylF	b3566	0.84	+1.3
3,729,991	+	xylF	b3566	0.84	-0.7
3,729,993	+	xylF	b3566	0.84	-0.1
3,730,001	-	xylF	b3566	0.85	-0.1
3,730,001	-	xylF	b3566	0.85	+0.1
3,730,004	-	xylF	b3566	0.86	-1.6
3,730,027	+	xylF	b3566	0.88	+0.2
3,730,037	-	xylF	b3566	0.89	+2.1
3,730,037	-	xylF	b3566	0.89	-0.1
3,730,038	-	xylF	b3566	0.89	-0.3
3,730,054	+				+0.6
3,730,054	+				-0.4
3,730,064	+				-0.0
3,730,064	+				+0.1
3,730,064	+				-0.7
3,730,064	+				+2.1
3,730,064	+				+0.7
3,730,072	-				-0.2
3,730,072	-				+0.2
3,730,077	-				+1.4
3,730,096	+				-0.2
3,730,133	-				-0.3
3,730,141	+				+1.1
3,730,158	-				+0.6
3,730,163	-				-0.5
3,730,163	-				+0.9
3,730,163	-				+0.2
3,730,163	-				+1.2
3,730,179	+				-0.5
3,730,179	+				-1.0
3,730,201	-				-0.5
3,730,229	-				-0.7
3,730,261	-				+0.6
3,730,337	+				-0.9
3,730,347	+				+0.1
3,730,347	+				-1.7
3,730,379	-	xylG	b3567	0.10	-1.7
3,730,379	-	xylG	b3567	0.10	+1.4
3,730,380	+	xylG	b3567	0.10	+1.1
3,730,381	-	xylG	b3567	0.10	-0.2
3,730,386	-	xylG	b3567	0.11	-0.2
3,730,393	+	xylG	b3567	0.11	+0.1
3,730,393	+	xylG	b3567	0.11	-0.3
3,730,394	+	xylG	b3567	0.11	+0.2
3,730,394	+	xylG	b3567	0.11	-1.2
3,730,426	+	xylG	b3567	0.13	+0.4
3,730,426	+	xylG	b3567	0.13	-0.4
3,730,429	+	xylG	b3567	0.13	+0.7
3,730,436	+	xylG	b3567	0.14	-1.0
3,730,436	+	xylG	b3567	0.14	-0.3
3,730,438	-	xylG	b3567	0.14	-0.2
3,730,440	+	xylG	b3567	0.14	-1.9
3,730,440	+	xylG	b3567	0.14	-0.5
3,730,440	+	xylG	b3567	0.14	+0.1
3,730,440	+	xylG	b3567	0.14	-0.2
3,730,448	+	xylG	b3567	0.15	+0.6
3,730,448	+	xylG	b3567	0.15	+0.2
3,730,448	+	xylG	b3567	0.15	-1.2
3,730,448	+	xylG	b3567	0.15	-0.1
3,730,448	+	xylG	b3567	0.15	+0.0
3,730,448	+	xylG	b3567	0.15	-0.7
3,730,448	-	xylG	b3567	0.15	-0.7
3,730,448	-	xylG	b3567	0.15	-0.4
3,730,448	-	xylG	b3567	0.15	-0.6
3,730,448	-	xylG	b3567	0.15	+1.6
3,730,450	+	xylG	b3567	0.15	+0.1
3,730,453	+	xylG	b3567	0.15	+0.5
3,730,456	-	xylG	b3567	0.15	+0.1
3,730,457	-	xylG	b3567	0.15	-0.4
3,730,460	+	xylG	b3567	0.15	+0.0
3,730,461	+	xylG	b3567	0.15	-0.1
3,730,461	+	xylG	b3567	0.15	-0.3
3,730,468	-	xylG	b3567	0.16	-0.2
3,730,468	-	xylG	b3567	0.16	-0.5
3,730,468	-	xylG	b3567	0.16	-0.7
3,730,471	-	xylG	b3567	0.16	-1.1
3,730,472	+	xylG	b3567	0.16	+0.5
3,730,472	+	xylG	b3567	0.16	+1.1
3,730,477	+	xylG	b3567	0.16	-0.0
3,730,487	+	xylG	b3567	0.17	-0.2
3,730,488	-	xylG	b3567	0.17	-1.0
3,730,505	+	xylG	b3567	0.18	-0.8
3,730,505	+	xylG	b3567	0.18	+0.5
3,730,515	+	xylG	b3567	0.19	-0.2
3,730,586	+	xylG	b3567	0.23	+1.3
3,730,589	-	xylG	b3567	0.24	-0.4
3,730,589	-	xylG	b3567	0.24	+0.9
3,730,589	-	xylG	b3567	0.24	+0.7
3,730,591	+	xylG	b3567	0.24	+0.1
3,730,591	+	xylG	b3567	0.24	+0.2
3,730,591	+	xylG	b3567	0.24	-0.4
3,730,591	+	xylG	b3567	0.24	-0.0
3,730,594	-	xylG	b3567	0.24	-0.1
3,730,594	-	xylG	b3567	0.24	+1.3
3,730,599	-	xylG	b3567	0.24	+0.3
3,730,599	-	xylG	b3567	0.24	+0.1
3,730,600	+	xylG	b3567	0.24	+2.0
3,730,600	+	xylG	b3567	0.24	-0.2
3,730,603	+	xylG	b3567	0.25	-0.5
3,730,603	+	xylG	b3567	0.25	+0.0
3,730,610	+	xylG	b3567	0.25	+0.0
3,730,614	+	xylG	b3567	0.25	+0.1
3,730,615	+	xylG	b3567	0.25	+0.2
3,730,619	+	xylG	b3567	0.26	+0.4
3,730,622	-	xylG	b3567	0.26	-0.0
3,730,648	+	xylG	b3567	0.27	+0.8
3,730,649	+	xylG	b3567	0.28	-2.0
3,730,656	-	xylG	b3567	0.28	+1.9
3,730,656	-	xylG	b3567	0.28	-0.9
3,730,656	-	xylG	b3567	0.28	+0.4
3,730,661	-	xylG	b3567	0.28	-0.3
3,730,664	+	xylG	b3567	0.29	+0.5
3,730,692	+	xylG	b3567	0.30	+0.6
3,730,692	+	xylG	b3567	0.30	-0.4
3,730,692	+	xylG	b3567	0.30	-0.2
3,730,694	+	xylG	b3567	0.30	+0.1
3,730,696	+	xylG	b3567	0.31	+0.1
3,730,734	+	xylG	b3567	0.33	+0.1
3,730,735	+	xylG	b3567	0.33	+0.1
3,730,736	+	xylG	b3567	0.33	-0.4
3,730,744	-	xylG	b3567	0.34	+0.9
3,730,744	-	xylG	b3567	0.34	+0.9
3,730,744	-	xylG	b3567	0.34	+0.8
3,730,746	-	xylG	b3567	0.34	+0.8
3,730,759	-	xylG	b3567	0.35	+0.3
3,730,776	+	xylG	b3567	0.36	-0.4
3,730,783	+	xylG	b3567	0.36	+0.8
3,730,783	+	xylG	b3567	0.36	-0.3
3,730,793	-	xylG	b3567	0.37	+0.1
3,730,793	-	xylG	b3567	0.37	-0.2
3,730,797	+	xylG	b3567	0.37	+0.8
3,730,797	+	xylG	b3567	0.37	-1.2
3,730,797	+	xylG	b3567	0.37	+0.3
3,730,807	+	xylG	b3567	0.38	+0.9
3,730,807	+	xylG	b3567	0.38	+0.7
3,730,815	-	xylG	b3567	0.38	-0.7
3,730,818	-	xylG	b3567	0.39	+1.1
3,730,827	-	xylG	b3567	0.39	+0.1
3,730,833	-	xylG	b3567	0.39	-0.8
3,730,833	-	xylG	b3567	0.39	+0.5
3,730,849	-	xylG	b3567	0.41	+0.5
3,730,856	+	xylG	b3567	0.41	+2.4
3,730,856	+	xylG	b3567	0.41	-0.8
3,730,864	-	xylG	b3567	0.42	-0.6
3,730,865	-	xylG	b3567	0.42	+1.6
3,730,878	+	xylG	b3567	0.42	+0.6
3,730,878	+	xylG	b3567	0.42	+0.4
3,730,880	+	xylG	b3567	0.43	+1.1
3,730,880	+	xylG	b3567	0.43	+0.7
3,730,880	+	xylG	b3567	0.43	-0.9
3,730,883	-	xylG	b3567	0.43	+1.1
3,730,883	-	xylG	b3567	0.43	+1.5
3,730,883	-	xylG	b3567	0.43	+1.1
3,730,887	+	xylG	b3567	0.43	-1.5
3,730,888	-	xylG	b3567	0.43	-1.0
3,730,888	-	xylG	b3567	0.43	-0.1
3,730,888	-	xylG	b3567	0.43	+0.2
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