Strain Fitness in Escherichia coli BW25113 around b2522

Experiment: Nickel (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nickel (II) chloride 1 mM
2,651,195	+	sseA	b2521	0.80	+3.7
2,651,195	+	sseA	b2521	0.80	+3.4
2,651,231	+	sseA	b2521	0.85	+3.9
2,651,231	+	sseA	b2521	0.85	+3.0
2,651,245	-	sseA	b2521	0.86	+2.9
2,651,248	+	sseA	b2521	0.87	+3.4
2,651,254	+	sseA	b2521	0.87	+2.2
2,651,254	+	sseA	b2521	0.87	+2.3
2,651,293	+				+2.5
2,651,294	-				+4.2
2,651,294	-				+2.6
2,651,296	+				+3.0
2,651,296	+				+2.8
2,651,306	+				+3.0
2,651,418	+				-0.2
2,651,420	-				-0.9
2,651,420	-				+0.3
2,651,430	+				-0.4
2,651,441	+				+1.6
2,651,441	+				+0.7
2,651,442	+				-0.6
2,651,442	+				+0.8
2,651,443	+				+2.0
2,651,443	+				-0.8
2,651,443	+				+0.7
2,651,443	+				+0.1
2,651,446	+				+0.5
2,651,446	+				+1.0
2,651,446	+				-1.0
2,651,451	-				-0.6
2,651,454	-				+1.5
2,651,454	-				+0.6
2,651,455	+				+0.2
2,651,455	+				+3.0
2,651,455	+				-0.6
2,651,455	+				+0.4
2,651,457	+				-0.1
2,651,461	-				+0.8
2,651,461	-				-0.1
2,651,463	-				+0.1
2,651,479	+				+0.4
2,651,479	+				+0.5
2,651,541	+				+0.3
2,651,543	+				-1.1
2,651,553	+				+0.5
2,651,575	+				-1.2
2,651,575	+				+0.4
2,651,736	+				+0.8
2,651,755	+				-1.1
2,651,756	+				-0.5
2,651,756	+				+0.8
2,651,761	-				+0.2
2,651,763	-				+0.3
2,651,767	+				-0.3
2,651,773	-				+0.2
2,651,775	-				+0.7
2,651,775	-				-0.3
2,651,775	-				+1.0
2,651,775	-				-1.2
2,651,778	-				-0.8
2,651,781	-				+0.8
2,651,789	-				+0.4
2,651,792	+				-0.6
2,651,792	+				-0.4
2,651,792	+				-0.0
2,651,792	+				+1.5
2,651,792	+				+0.6
2,651,798	-				-0.1
2,651,798	-				+1.2
2,651,798	-				+0.7
2,651,798	-				-0.3
2,651,801	+				-0.4
2,651,801	+				+0.4
2,651,804	+				+2.1
2,651,809	-				-0.0
2,651,809	-				-0.3
2,651,809	-				-1.8
2,651,809	-				+0.1
2,651,809	-				-0.2
2,651,811	+				-0.1
2,651,812	-				+0.7
2,651,820	-				-1.1
2,651,822	-				-2.0
2,651,867	+				-0.0
2,651,867	+				+1.0
2,651,867	+				-0.4
2,651,867	+				+0.1
2,651,867	+				+1.0
2,651,867	+				+0.2
2,651,867	-				+0.5
2,651,870	+				-0.4
2,651,875	-				+1.0
2,651,875	-				+0.6
2,651,875	-				-0.1
2,651,875	-				+1.5
2,651,883	-				+1.8
2,651,884	+				+1.0
2,651,884	+				+1.3
2,651,890	-				+0.2
2,651,890	-				-0.7
2,651,890	-				+2.0
2,651,908	-	ryfA	b4440	0.10	+2.0
2,651,911	+	ryfA	b4440	0.11	+1.3
2,651,911	+	ryfA	b4440	0.11	-0.3
2,651,916	+	ryfA	b4440	0.13	-0.4
2,651,918	+	ryfA	b4440	0.13	+1.6
2,651,920	-	ryfA	b4440	0.14	+0.1
2,651,920	-	ryfA	b4440	0.14	-0.3
2,651,923	+	ryfA	b4440	0.15	+0.4
2,651,923	+	ryfA	b4440	0.15	-1.8
2,651,949	+	ryfA	b4440	0.24	+1.4
2,651,949	+	ryfA	b4440	0.24	-0.2
2,651,967	-	ryfA	b4440	0.30	+1.2
2,651,984	+	ryfA	b4440	0.35	-1.7
2,651,992	+	ryfA	b4440	0.38	-0.2
2,651,995	+	ryfA	b4440	0.39	-0.3
2,652,000	-	ryfA	b4440	0.40	+0.9
2,652,003	-	ryfA	b4440	0.41	-0.1
2,652,008	+	ryfA	b4440	0.43	-0.4
2,652,008	+	ryfA	b4440	0.43	+0.2
2,652,008	+	ryfA	b4440	0.43	-0.6
2,652,008	+	ryfA	b4440	0.43	-1.0
2,652,008	+	ryfA	b4440	0.43	+0.1
2,652,008	+	ryfA	b4440	0.43	-0.7
2,652,008	+	ryfA	b4440	0.43	+1.2
2,652,016	-	ryfA	b4440	0.46	-1.8
2,652,016	-	ryfA	b4440	0.46	-1.2
2,652,018	+	ryfA	b4440	0.46	+0.6
2,652,021	-	ryfA	b4440	0.47	-1.0
2,652,027	-	ryfA	b4440	0.49	-1.5
2,652,048	+	ryfA	b4440	0.56	+0.1
2,652,048	+	ryfA	b4440	0.56	+1.6
2,652,048	+	ryfA	b4440	0.56	-0.1
2,652,068	-	ryfA	b4440	0.63	-0.8
2,652,077	-	ryfA	b4440	0.66	+1.0
2,652,092	-	ryfA	b4440	0.71	-0.2
2,652,105	+	ryfA	b4440	0.75	-0.8
2,652,108	+	ryfA	b4440	0.76	+1.8
2,652,108	+	ryfA	b4440	0.76	-0.7
2,652,111	+	ryfA	b4440	0.77	+0.5
2,652,122	+	ryfA	b4440	0.81	+0.3
2,652,122	+	ryfA	b4440	0.81	+1.5
2,652,129	+	ryfA	b4440	0.83	+0.4
2,652,129	+	ryfA	b4440	0.83	-0.1
2,652,129	+	ryfA	b4440	0.83	-0.0
2,652,129	+	ryfA	b4440	0.83	-0.2
2,652,136	+	ryfA	b4440	0.85	-0.6
2,652,136	+	ryfA	b4440	0.85	+0.7
2,652,136	+	ryfA	b4440	0.85	-1.0
2,652,137	-	ryfA	b4440	0.86	+1.2
2,652,138	+	ryfA	b4440	0.86	-0.3
2,652,139	+	ryfA	b4440	0.86	-0.3
2,652,139	+	ryfA	b4440	0.86	+2.1
2,652,139	+	ryfA	b4440	0.86	-0.7
2,652,139	+	ryfA	b4440	0.86	-0.0
2,652,139	+	ryfA	b4440	0.86	+0.6
2,652,139	+	ryfA	b4440	0.86	+1.0
2,652,139	+	ryfA	b4440	0.86	-0.3
2,652,143	+	ryfA	b4440	0.88	+0.6
2,652,143	+	ryfA	b4440	0.88	-0.0
2,652,143	+	ryfA	b4440	0.88	+0.2
2,652,143	+	ryfA	b4440	0.88	+0.4
2,652,147	+	ryfA	b4440	0.89	+0.7
2,652,147	+	ryfA	b4440	0.89	-0.3
2,652,148	+	ryfA	b4440	0.89	-0.2
2,652,148	+	ryfA	b4440	0.89	+0.1
2,652,149	-	ryfA	b4440	0.89	-1.0
2,652,151	-				-0.0
2,652,156	-				+0.1
2,652,219	+				-0.0
2,652,219	+				-0.4
2,652,227	-				-0.9
2,652,227	-				-1.3
2,652,229	+				+0.7
2,652,239	-				-0.9
2,652,239	-				-1.1
2,652,251	-				+0.2
2,652,251	-				-0.0
2,652,255	+				+0.2
2,652,303	-	sseB	b2522	0.16	-0.0
2,652,303	-	sseB	b2522	0.16	+1.6
2,652,310	+	sseB	b2522	0.17	+0.6
2,652,318	-				+0.4
2,652,318	-	sseB	b2522	0.18	+2.2
2,652,318	-	sseB	b2522	0.18	-0.8
2,652,318	-	sseB	b2522	0.18	+0.2
2,652,318	-	sseB	b2522	0.18	-0.2
2,652,318	-	sseB	b2522	0.18	+1.0
2,652,322	+	sseB	b2522	0.18	-1.8
2,652,325	-	sseB	b2522	0.19	+1.0
2,652,326	-	sseB	b2522	0.19	+0.4
2,652,330	-	sseB	b2522	0.19	+2.0
2,652,330	-	sseB	b2522	0.19	+0.8
2,652,342	-	sseB	b2522	0.21	-0.2
2,652,342	-	sseB	b2522	0.21	-1.3
2,652,345	-	sseB	b2522	0.21	-0.0
2,652,345	-	sseB	b2522	0.21	-1.0
2,652,371	+	sseB	b2522	0.25	-0.7
2,652,383	-	sseB	b2522	0.26	-0.2
2,652,383	-	sseB	b2522	0.26	-0.2
2,652,396	-	sseB	b2522	0.28	+0.3
2,652,405	-	sseB	b2522	0.29	+1.1
2,652,405	-	sseB	b2522	0.29	+0.5
2,652,459	-	sseB	b2522	0.36	+1.1
2,652,482	-	sseB	b2522	0.39	+0.6
2,652,496	-	sseB	b2522	0.41	-0.3
2,652,499	-	sseB	b2522	0.41	-0.3
2,652,509	-	sseB	b2522	0.42	+0.4
2,652,517	-	sseB	b2522	0.44	+1.5
2,652,551	-	sseB	b2522	0.48	+0.3
2,652,555	+	sseB	b2522	0.48	+1.3
2,652,555	+	sseB	b2522	0.48	+0.5
2,652,561	-	sseB	b2522	0.49	-1.0
2,652,561	-	sseB	b2522	0.49	-0.2
2,652,561	-	sseB	b2522	0.49	+0.6
2,652,561	-	sseB	b2522	0.49	+0.9
2,652,561	-	sseB	b2522	0.49	-0.0
2,652,571	-	sseB	b2522	0.50	-2.2
2,652,574	-	sseB	b2522	0.51	+0.4
2,652,586	-	sseB	b2522	0.52	+1.0
2,652,586	-	sseB	b2522	0.52	-0.3
2,652,588	-	sseB	b2522	0.53	+1.0
2,652,588	-	sseB	b2522	0.53	-0.6
2,652,659	+	sseB	b2522	0.62	-0.1
2,652,672	-	sseB	b2522	0.63	+0.5
2,652,677	-	sseB	b2522	0.64	+0.7
2,652,685	-	sseB	b2522	0.65	+1.7
2,652,713	+	sseB	b2522	0.69	+1.7
2,652,713	+	sseB	b2522	0.69	+0.1
2,652,735	-	sseB	b2522	0.72	+0.7
2,652,735	-	sseB	b2522	0.72	-0.5
2,652,744	-	sseB	b2522	0.73	+0.7
2,652,744	-	sseB	b2522	0.73	+0.1
2,652,813	-	sseB	b2522	0.82	+0.1
2,652,822	+	sseB	b2522	0.83	-1.6
2,652,822	+	sseB	b2522	0.83	-0.0
2,652,838	+	sseB	b2522	0.85	-0.6
2,652,838	+	sseB	b2522	0.85	-0.6
2,652,858	-	sseB	b2522	0.87	+1.0
2,653,012	-				-0.2
2,653,269	-	pepB	b2523	0.13	-0.4
2,653,358	-	pepB	b2523	0.20	+0.6
2,653,472	+	pepB	b2523	0.29	-0.6
2,653,628	-	pepB	b2523	0.41	-0.8
2,653,652	-	pepB	b2523	0.43	-0.3
2,653,652	-	pepB	b2523	0.43	+0.1
2,653,652	-	pepB	b2523	0.43	+1.0
2,653,759	+	pepB	b2523	0.52	-0.2
2,653,759	+	pepB	b2523	0.52	+1.0
2,653,927	+	pepB	b2523	0.65	+0.6
2,653,927	+	pepB	b2523	0.65	-1.0