Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS19125 and UW163_RS19130 are separated by 88 nucleotides UW163_RS19130 and UW163_RS19135 are separated by 60 nucleotides UW163_RS19135 and UW163_RS19140 are separated by 62 nucleotides
UW163_RS19125: UW163_RS19125 - type VI secretion system contractile sheath large subunit, at 701,200 to 702,690
_RS19125
UW163_RS19130: UW163_RS19130 - type VI secretion system tube protein Hcp, at 702,779 to 703,282
_RS19130
UW163_RS19135: UW163_RS19135 - type VI secretion system baseplate subunit TssE, at 703,343 to 703,816
_RS19135
UW163_RS19140: UW163_RS19140 - type VI secretion system baseplate subunit TssF, at 703,879 to 705,729
_RS19140
Position (kb) 702
703
704 Strain fitness (log2 ratio) -2
-1
0
1 at 701.908 kb on + strand, within UW163_RS19125 at 701.909 kb on - strand, within UW163_RS19125 at 701.950 kb on + strand, within UW163_RS19125 at 701.951 kb on - strand, within UW163_RS19125 at 702.025 kb on + strand, within UW163_RS19125 at 702.025 kb on + strand, within UW163_RS19125 at 702.025 kb on + strand, within UW163_RS19125 at 702.026 kb on - strand, within UW163_RS19125 at 702.150 kb on + strand, within UW163_RS19125 at 702.150 kb on + strand, within UW163_RS19125 at 702.322 kb on + strand, within UW163_RS19125 at 702.322 kb on + strand, within UW163_RS19125 at 702.323 kb on - strand, within UW163_RS19125 at 702.373 kb on + strand, within UW163_RS19125 at 702.373 kb on + strand, within UW163_RS19125 at 702.373 kb on + strand, within UW163_RS19125 at 702.373 kb on + strand, within UW163_RS19125 at 702.374 kb on - strand, within UW163_RS19125 at 702.374 kb on - strand, within UW163_RS19125 at 702.374 kb on - strand, within UW163_RS19125 at 702.374 kb on - strand, within UW163_RS19125 at 702.404 kb on - strand, within UW163_RS19125 at 702.490 kb on + strand, within UW163_RS19125 at 702.490 kb on + strand, within UW163_RS19125 at 702.490 kb on + strand, within UW163_RS19125 at 702.491 kb on - strand at 702.588 kb on + strand at 702.588 kb on + strand at 702.588 kb on + strand at 702.738 kb on + strand at 702.738 kb on + strand at 702.738 kb on + strand at 702.738 kb on + strand at 702.738 kb on + strand at 702.739 kb on - strand at 702.739 kb on - strand at 702.739 kb on - strand at 702.739 kb on - strand at 702.757 kb on + strand at 702.758 kb on - strand at 702.758 kb on - strand at 702.764 kb on + strand at 702.764 kb on + strand at 702.765 kb on - strand at 702.765 kb on - strand at 702.765 kb on - strand at 702.787 kb on + strand at 702.787 kb on + strand at 702.791 kb on + strand at 702.791 kb on + strand at 702.791 kb on + strand at 702.791 kb on + strand at 702.792 kb on - strand at 702.792 kb on - strand at 702.792 kb on - strand at 702.792 kb on - strand at 702.792 kb on - strand at 702.792 kb on - strand at 702.792 kb on - strand at 702.792 kb on - strand at 702.995 kb on + strand, within UW163_RS19130 at 703.079 kb on + strand, within UW163_RS19130 at 703.079 kb on + strand at 703.172 kb on + strand, within UW163_RS19130 at 703.194 kb on - strand, within UW163_RS19130 at 703.336 kb on + strand at 703.338 kb on + strand at 703.338 kb on + strand at 703.339 kb on - strand at 703.339 kb on - strand at 703.481 kb on - strand, within UW163_RS19135 at 703.548 kb on - strand, within UW163_RS19135 at 703.589 kb on + strand, within UW163_RS19135 at 703.589 kb on + strand, within UW163_RS19135 at 703.589 kb on + strand, within UW163_RS19135 at 703.590 kb on - strand, within UW163_RS19135 at 703.590 kb on - strand, within UW163_RS19135 at 703.591 kb on - strand, within UW163_RS19135 at 703.601 kb on + strand, within UW163_RS19135 at 703.601 kb on + strand, within UW163_RS19135 at 703.601 kb on + strand, within UW163_RS19135 at 703.602 kb on - strand, within UW163_RS19135 at 703.602 kb on - strand, within UW163_RS19135 at 703.900 kb on + strand at 703.900 kb on + strand at 703.900 kb on + strand at 703.901 kb on - strand at 704.113 kb on + strand, within UW163_RS19140 at 704.114 kb on - strand, within UW163_RS19140 at 704.114 kb on - strand, within UW163_RS19140 at 704.122 kb on + strand, within UW163_RS19140
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 701,908 + UW163_RS19125 0.47 +1.7 701,909 - UW163_RS19125 0.48 +1.4 701,950 + UW163_RS19125 0.50 -2.0 701,951 - UW163_RS19125 0.50 -1.7 702,025 + UW163_RS19125 0.55 +0.7 702,025 + UW163_RS19125 0.55 +0.8 702,025 + UW163_RS19125 0.55 +0.6 702,026 - UW163_RS19125 0.55 -0.2 702,150 + UW163_RS19125 0.64 +0.8 702,150 + UW163_RS19125 0.64 -0.3 702,322 + UW163_RS19125 0.75 +1.7 702,322 + UW163_RS19125 0.75 -0.0 702,323 - UW163_RS19125 0.75 -0.1 702,373 + UW163_RS19125 0.79 +0.3 702,373 + UW163_RS19125 0.79 -0.0 702,373 + UW163_RS19125 0.79 +0.5 702,373 + UW163_RS19125 0.79 +0.1 702,374 - UW163_RS19125 0.79 +0.3 702,374 - UW163_RS19125 0.79 -0.4 702,374 - UW163_RS19125 0.79 -1.4 702,374 - UW163_RS19125 0.79 +0.0 702,404 - UW163_RS19125 0.81 +1.0 702,490 + UW163_RS19125 0.87 +0.1 702,490 + UW163_RS19125 0.87 -0.3 702,490 + UW163_RS19125 0.87 +1.1 702,491 - +1.7 702,588 + -0.4 702,588 + +0.3 702,588 + -0.9 702,738 + -0.0 702,738 + +0.2 702,738 + +0.0 702,738 + -2.2 702,738 + -0.4 702,739 - +0.3 702,739 - -2.4 702,739 - +0.4 702,739 - +0.5 702,757 + +0.1 702,758 - +0.7 702,758 - +0.6 702,764 + +0.1 702,764 + -0.2 702,765 - -0.7 702,765 - +0.9 702,765 - +1.1 702,787 + -0.2 702,787 + -0.1 702,791 + +0.1 702,791 + -0.0 702,791 + +1.1 702,791 + -1.2 702,792 - -0.5 702,792 - -0.0 702,792 - +0.5 702,792 - -0.7 702,792 - +0.3 702,792 - -0.3 702,792 - +0.1 702,792 - +1.0 702,995 + UW163_RS19130 0.43 -1.1 703,079 + UW163_RS19130 0.60 +0.3 703,079 + +1.1 703,172 + UW163_RS19130 0.78 -0.3 703,194 - UW163_RS19130 0.82 +0.3 703,336 + -0.4 703,338 + -0.2 703,338 + -0.2 703,339 - +0.2 703,339 - -0.2 703,481 - UW163_RS19135 0.29 -0.3 703,548 - UW163_RS19135 0.43 -0.3 703,589 + UW163_RS19135 0.52 +0.1 703,589 + UW163_RS19135 0.52 +1.5 703,589 + UW163_RS19135 0.52 -0.3 703,590 - UW163_RS19135 0.52 -0.4 703,590 - UW163_RS19135 0.52 +0.3 703,591 - UW163_RS19135 0.52 +0.1 703,601 + UW163_RS19135 0.54 -1.1 703,601 + UW163_RS19135 0.54 +0.0 703,601 + UW163_RS19135 0.54 +0.8 703,602 - UW163_RS19135 0.55 -1.0 703,602 - UW163_RS19135 0.55 -1.1 703,900 + -0.5 703,900 + +0.1 703,900 + +0.6 703,901 - -0.9 704,113 + UW163_RS19140 0.13 -0.8 704,114 - UW163_RS19140 0.13 +0.1 704,114 - UW163_RS19140 0.13 -0.1 704,122 + UW163_RS19140 0.13 -0.0
Or see this region's nucleotide sequence