Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS19105

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS19095 and UW163_RS19100 are separated by 60 nucleotidesUW163_RS19100 and UW163_RS19105 overlap by 4 nucleotidesUW163_RS19105 and UW163_RS19110 are separated by 54 nucleotides UW163_RS19095: UW163_RS19095 - hypothetical protein, at 696,128 to 696,811 _RS19095 UW163_RS19100: UW163_RS19100 - type VI secretion system protein ImpK, at 696,872 to 697,660 _RS19100 UW163_RS19105: UW163_RS19105 - type VI secretion system baseplate subunit TssK, at 697,657 to 699,003 _RS19105 UW163_RS19110: UW163_RS19110 - type VI secretion system lipoprotein TssJ, at 699,058 to 699,738 _RS19110 Position (kb) 697 698 699 700Strain fitness (log2 ratio) -2 -1 0 1 2at 696.931 kb on - strandat 696.984 kb on + strand, within UW163_RS19100at 696.985 kb on - strand, within UW163_RS19100at 696.985 kb on - strand, within UW163_RS19100at 697.146 kb on + strand, within UW163_RS19100at 697.146 kb on + strand, within UW163_RS19100at 697.176 kb on + strand, within UW163_RS19100at 697.176 kb on + strand, within UW163_RS19100at 697.176 kb on + strand, within UW163_RS19100at 697.176 kb on + strand, within UW163_RS19100at 697.176 kb on + strand, within UW163_RS19100at 697.176 kb on + strand, within UW163_RS19100at 697.177 kb on - strand, within UW163_RS19100at 697.177 kb on - strand, within UW163_RS19100at 697.177 kb on - strand, within UW163_RS19100at 697.177 kb on - strand, within UW163_RS19100at 697.177 kb on - strand, within UW163_RS19100at 697.177 kb on - strand, within UW163_RS19100at 697.177 kb on - strand, within UW163_RS19100at 697.395 kb on + strand, within UW163_RS19100at 697.548 kb on + strand, within UW163_RS19100at 697.548 kb on + strand, within UW163_RS19100at 697.549 kb on - strand, within UW163_RS19100at 697.549 kb on - strand, within UW163_RS19100at 697.549 kb on - strand, within UW163_RS19100at 697.652 kb on - strandat 697.712 kb on + strandat 697.712 kb on + strandat 697.712 kb on + strandat 697.713 kb on - strandat 697.713 kb on - strandat 697.749 kb on - strandat 697.749 kb on - strandat 697.824 kb on + strand, within UW163_RS19105at 697.824 kb on + strand, within UW163_RS19105at 697.826 kb on + strand, within UW163_RS19105at 697.826 kb on + strand, within UW163_RS19105at 697.826 kb on + strand, within UW163_RS19105at 697.827 kb on - strand, within UW163_RS19105at 697.827 kb on - strand, within UW163_RS19105at 697.827 kb on - strand, within UW163_RS19105at 697.956 kb on - strand, within UW163_RS19105at 697.956 kb on - strand, within UW163_RS19105at 697.956 kb on - strand, within UW163_RS19105at 697.956 kb on - strand, within UW163_RS19105at 698.042 kb on + strand, within UW163_RS19105at 698.042 kb on + strand, within UW163_RS19105at 698.043 kb on - strand, within UW163_RS19105at 698.062 kb on - strand, within UW163_RS19105at 698.126 kb on + strand, within UW163_RS19105at 698.126 kb on + strand, within UW163_RS19105at 698.127 kb on - strand, within UW163_RS19105at 698.150 kb on + strandat 698.150 kb on + strand, within UW163_RS19105at 698.150 kb on + strand, within UW163_RS19105at 698.151 kb on - strand, within UW163_RS19105at 698.151 kb on - strand, within UW163_RS19105at 698.151 kb on - strand, within UW163_RS19105at 698.151 kb on - strand, within UW163_RS19105at 698.235 kb on - strand, within UW163_RS19105at 698.235 kb on - strand, within UW163_RS19105at 698.348 kb on + strand, within UW163_RS19105at 698.349 kb on - strand, within UW163_RS19105at 698.349 kb on - strandat 698.349 kb on - strand, within UW163_RS19105at 698.561 kb on + strand, within UW163_RS19105at 698.561 kb on + strand, within UW163_RS19105at 698.562 kb on - strand, within UW163_RS19105at 698.562 kb on - strand, within UW163_RS19105at 698.780 kb on + strand, within UW163_RS19105at 698.781 kb on - strand, within UW163_RS19105at 698.928 kb on - strandat 698.928 kb on - strandat 698.996 kb on + strandat 698.996 kb on + strandat 698.996 kb on + strandat 698.996 kb on + strandat 698.996 kb on + strandat 698.997 kb on - strandat 699.032 kb on + strandat 699.381 kb on + strand, within UW163_RS19110at 699.382 kb on - strand, within UW163_RS19110at 699.392 kb on + strand, within UW163_RS19110at 699.431 kb on + strand, within UW163_RS19110at 699.431 kb on + strand, within UW163_RS19110at 699.431 kb on + strand, within UW163_RS19110at 699.432 kb on - strand, within UW163_RS19110at 699.432 kb on - strand, within UW163_RS19110at 699.433 kb on + strand, within UW163_RS19110at 699.433 kb on + strand, within UW163_RS19110at 699.433 kb on + strand, within UW163_RS19110at 699.433 kb on + strand, within UW163_RS19110at 699.433 kb on + strand, within UW163_RS19110at 699.433 kb on + strand, within UW163_RS19110at 699.433 kb on + strand, within UW163_RS19110at 699.433 kb on + strand, within UW163_RS19110at 699.434 kb on - strand, within UW163_RS19110at 699.434 kb on - strand, within UW163_RS19110at 699.434 kb on - strand, within UW163_RS19110at 699.748 kb on - strandat 699.755 kb on - strandat 699.846 kb on + strandat 699.941 kb on - strandat 699.941 kb on - strandat 699.943 kb on - strandat 699.943 kb on - strandat 699.963 kb on - strandat 699.963 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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696,931 - -0.2
696,984 + UW163_RS19100 0.14 -0.4
696,985 - UW163_RS19100 0.14 -0.9
696,985 - UW163_RS19100 0.14 -0.3
697,146 + UW163_RS19100 0.35 -1.4
697,146 + UW163_RS19100 0.35 +0.6
697,176 + UW163_RS19100 0.39 +0.1
697,176 + UW163_RS19100 0.39 -0.0
697,176 + UW163_RS19100 0.39 +1.0
697,176 + UW163_RS19100 0.39 -2.3
697,176 + UW163_RS19100 0.39 -0.3
697,176 + UW163_RS19100 0.39 -0.6
697,177 - UW163_RS19100 0.39 -0.9
697,177 - UW163_RS19100 0.39 -0.4
697,177 - UW163_RS19100 0.39 -0.7
697,177 - UW163_RS19100 0.39 -1.0
697,177 - UW163_RS19100 0.39 -0.7
697,177 - UW163_RS19100 0.39 +0.7
697,177 - UW163_RS19100 0.39 +0.1
697,395 + UW163_RS19100 0.66 -0.1
697,548 + UW163_RS19100 0.86 +0.6
697,548 + UW163_RS19100 0.86 -0.2
697,549 - UW163_RS19100 0.86 +0.1
697,549 - UW163_RS19100 0.86 -0.9
697,549 - UW163_RS19100 0.86 -0.5
697,652 - -0.3
697,712 + -0.2
697,712 + +1.1
697,712 + -1.4
697,713 - +0.2
697,713 - -0.5
697,749 - +1.1
697,749 - -0.9
697,824 + UW163_RS19105 0.12 -0.4
697,824 + UW163_RS19105 0.12 -0.1
697,826 + UW163_RS19105 0.13 -0.6
697,826 + UW163_RS19105 0.13 +0.2
697,826 + UW163_RS19105 0.13 -0.5
697,827 - UW163_RS19105 0.13 -0.2
697,827 - UW163_RS19105 0.13 -1.4
697,827 - UW163_RS19105 0.13 +0.5
697,956 - UW163_RS19105 0.22 +1.0
697,956 - UW163_RS19105 0.22 +0.1
697,956 - UW163_RS19105 0.22 +0.4
697,956 - UW163_RS19105 0.22 -0.3
698,042 + UW163_RS19105 0.29 -0.7
698,042 + UW163_RS19105 0.29 -0.5
698,043 - UW163_RS19105 0.29 -0.8
698,062 - UW163_RS19105 0.30 +0.6
698,126 + UW163_RS19105 0.35 +1.7
698,126 + UW163_RS19105 0.35 +1.9
698,127 - UW163_RS19105 0.35 +0.5
698,150 + +0.1
698,150 + UW163_RS19105 0.37 -0.4
698,150 + UW163_RS19105 0.37 -0.9
698,151 - UW163_RS19105 0.37 -0.3
698,151 - UW163_RS19105 0.37 +0.1
698,151 - UW163_RS19105 0.37 +0.4
698,151 - UW163_RS19105 0.37 -0.3
698,235 - UW163_RS19105 0.43 +1.0
698,235 - UW163_RS19105 0.43 -0.2
698,348 + UW163_RS19105 0.51 -0.3
698,349 - UW163_RS19105 0.51 +0.8
698,349 - -0.9
698,349 - UW163_RS19105 0.51 -0.2
698,561 + UW163_RS19105 0.67 +0.0
698,561 + UW163_RS19105 0.67 -0.3
698,562 - UW163_RS19105 0.67 -0.3
698,562 - UW163_RS19105 0.67 +0.2
698,780 + UW163_RS19105 0.83 +1.1
698,781 - UW163_RS19105 0.83 +0.1
698,928 - +0.0
698,928 - +0.0
698,996 + +0.7
698,996 + +0.6
698,996 + +0.0
698,996 + +2.1
698,996 + -0.4
698,997 - -0.6
699,032 + +0.1
699,381 + UW163_RS19110 0.47 +1.7
699,382 - UW163_RS19110 0.48 -0.4
699,392 + UW163_RS19110 0.49 -0.1
699,431 + UW163_RS19110 0.55 -0.5
699,431 + UW163_RS19110 0.55 -0.6
699,431 + UW163_RS19110 0.55 +0.0
699,432 - UW163_RS19110 0.55 +0.1
699,432 - UW163_RS19110 0.55 +0.8
699,433 + UW163_RS19110 0.55 +1.7
699,433 + UW163_RS19110 0.55 +1.1
699,433 + UW163_RS19110 0.55 +1.4
699,433 + UW163_RS19110 0.55 +0.3
699,433 + UW163_RS19110 0.55 -0.3
699,433 + UW163_RS19110 0.55 +0.0
699,433 + UW163_RS19110 0.55 -0.2
699,433 + UW163_RS19110 0.55 +0.6
699,434 - UW163_RS19110 0.55 -1.4
699,434 - UW163_RS19110 0.55 -0.4
699,434 - UW163_RS19110 0.55 -0.3
699,748 - -0.3
699,755 - +1.1
699,846 + -0.2
699,941 - -0.0
699,941 - -0.0
699,943 - +0.3
699,943 - +0.1
699,963 - -0.5
699,963 - -0.0

Or see this region's nucleotide sequence