Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS17635

Experiment: CPG

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntUW163_RS17630 and UW163_RS17635 are separated by 193 nucleotidesUW163_RS17635 and UW163_RS17640 are separated by 525 nucleotides UW163_RS17630: UW163_RS17630 - sulfurtransferase, at 333,957 to 334,937 _RS17630 UW163_RS17635: UW163_RS17635 - diguanylate cyclase, at 335,131 to 336,598 _RS17635 UW163_RS17640: UW163_RS17640 - tetratricopeptide repeat protein, at 337,124 to 338,776 _RS17640 Position (kb) 335 336 337Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 334.141 kb on + strand, within UW163_RS17630at 334.141 kb on + strand, within UW163_RS17630at 334.141 kb on + strand, within UW163_RS17630at 334.142 kb on - strand, within UW163_RS17630at 334.204 kb on + strand, within UW163_RS17630at 334.204 kb on + strand, within UW163_RS17630at 334.205 kb on - strand, within UW163_RS17630at 334.205 kb on - strand, within UW163_RS17630at 334.381 kb on + strand, within UW163_RS17630at 334.381 kb on + strand, within UW163_RS17630at 334.382 kb on - strand, within UW163_RS17630at 334.382 kb on - strand, within UW163_RS17630at 334.503 kb on + strand, within UW163_RS17630at 334.503 kb on + strand, within UW163_RS17630at 334.503 kb on + strand, within UW163_RS17630at 334.504 kb on - strand, within UW163_RS17630at 334.525 kb on + strand, within UW163_RS17630at 334.525 kb on + strand, within UW163_RS17630at 334.525 kb on + strand, within UW163_RS17630at 334.525 kb on + strand, within UW163_RS17630at 334.526 kb on - strand, within UW163_RS17630at 334.526 kb on - strandat 334.736 kb on - strand, within UW163_RS17630at 334.907 kb on - strandat 335.132 kb on + strandat 335.132 kb on + strandat 335.132 kb on + strandat 335.133 kb on - strandat 335.171 kb on + strandat 335.171 kb on + strandat 335.171 kb on + strandat 335.394 kb on - strand, within UW163_RS17635at 335.495 kb on + strand, within UW163_RS17635at 335.690 kb on + strand, within UW163_RS17635at 335.691 kb on - strand, within UW163_RS17635at 335.691 kb on - strand, within UW163_RS17635at 335.691 kb on - strand, within UW163_RS17635at 335.691 kb on - strand, within UW163_RS17635at 335.768 kb on + strand, within UW163_RS17635at 335.768 kb on + strand, within UW163_RS17635at 335.769 kb on - strand, within UW163_RS17635at 335.772 kb on + strand, within UW163_RS17635at 335.772 kb on + strand, within UW163_RS17635at 335.773 kb on - strand, within UW163_RS17635at 335.773 kb on - strand, within UW163_RS17635at 335.773 kb on - strand, within UW163_RS17635at 335.810 kb on + strand, within UW163_RS17635at 335.811 kb on - strand, within UW163_RS17635at 335.828 kb on + strand, within UW163_RS17635at 335.828 kb on + strand, within UW163_RS17635at 335.834 kb on + strand, within UW163_RS17635at 335.834 kb on + strand, within UW163_RS17635at 335.873 kb on + strand, within UW163_RS17635at 335.873 kb on + strand, within UW163_RS17635at 335.874 kb on - strand, within UW163_RS17635at 335.874 kb on - strand, within UW163_RS17635at 335.874 kb on - strand, within UW163_RS17635at 335.981 kb on + strand, within UW163_RS17635at 335.981 kb on + strand, within UW163_RS17635at 335.982 kb on - strand, within UW163_RS17635at 335.982 kb on - strand, within UW163_RS17635at 335.982 kb on - strand, within UW163_RS17635at 336.041 kb on + strand, within UW163_RS17635at 336.159 kb on + strand, within UW163_RS17635at 336.160 kb on - strand, within UW163_RS17635at 336.160 kb on - strand, within UW163_RS17635at 336.161 kb on + strand, within UW163_RS17635at 336.161 kb on + strand, within UW163_RS17635at 336.161 kb on + strand, within UW163_RS17635at 336.162 kb on - strand, within UW163_RS17635at 336.162 kb on - strand, within UW163_RS17635at 336.162 kb on - strand, within UW163_RS17635at 336.162 kb on - strandat 336.162 kb on - strand, within UW163_RS17635at 336.171 kb on + strand, within UW163_RS17635at 336.172 kb on - strand, within UW163_RS17635at 336.172 kb on - strand, within UW163_RS17635at 336.200 kb on + strand, within UW163_RS17635at 336.200 kb on + strand, within UW163_RS17635at 336.201 kb on - strand, within UW163_RS17635at 336.408 kb on + strand, within UW163_RS17635at 336.409 kb on - strand, within UW163_RS17635at 336.409 kb on - strand, within UW163_RS17635at 336.409 kb on - strand, within UW163_RS17635at 336.409 kb on - strand, within UW163_RS17635at 336.545 kb on + strandat 336.545 kb on + strandat 336.545 kb on + strandat 336.546 kb on - strandat 336.546 kb on - strandat 336.547 kb on - strandat 336.577 kb on + strandat 336.578 kb on - strandat 336.584 kb on + strandat 336.976 kb on + strandat 336.976 kb on + strandat 337.035 kb on + strandat 337.036 kb on - strandat 337.095 kb on - strandat 337.550 kb on + strand, within UW163_RS17640at 337.550 kb on + strand, within UW163_RS17640at 337.551 kb on - strand, within UW163_RS17640at 337.568 kb on + strand, within UW163_RS17640at 337.568 kb on + strand, within UW163_RS17640at 337.568 kb on + strand, within UW163_RS17640at 337.568 kb on + strand, within UW163_RS17640at 337.569 kb on - strand, within UW163_RS17640

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction CPG
remove
334,141 + UW163_RS17630 0.19 -0.5
334,141 + UW163_RS17630 0.19 -0.5
334,141 + UW163_RS17630 0.19 +0.7
334,142 - UW163_RS17630 0.19 -0.6
334,204 + UW163_RS17630 0.25 -0.2
334,204 + UW163_RS17630 0.25 +0.1
334,205 - UW163_RS17630 0.25 -0.7
334,205 - UW163_RS17630 0.25 -0.7
334,381 + UW163_RS17630 0.43 -0.0
334,381 + UW163_RS17630 0.43 -0.2
334,382 - UW163_RS17630 0.43 +0.7
334,382 - UW163_RS17630 0.43 +0.1
334,503 + UW163_RS17630 0.56 +0.1
334,503 + UW163_RS17630 0.56 -0.1
334,503 + UW163_RS17630 0.56 -0.0
334,504 - UW163_RS17630 0.56 -0.3
334,525 + UW163_RS17630 0.58 -0.8
334,525 + UW163_RS17630 0.58 -0.3
334,525 + UW163_RS17630 0.58 -1.2
334,525 + UW163_RS17630 0.58 -0.3
334,526 - UW163_RS17630 0.58 +0.5
334,526 - +1.4
334,736 - UW163_RS17630 0.79 -1.1
334,907 - -0.3
335,132 + +0.2
335,132 + -3.1
335,132 + +0.2
335,133 - +2.0
335,171 + -1.6
335,171 + -1.0
335,171 + -0.3
335,394 - UW163_RS17635 0.18 +0.3
335,495 + UW163_RS17635 0.25 -1.2
335,690 + UW163_RS17635 0.38 -0.4
335,691 - UW163_RS17635 0.38 -0.6
335,691 - UW163_RS17635 0.38 +1.4
335,691 - UW163_RS17635 0.38 +0.5
335,691 - UW163_RS17635 0.38 +1.0
335,768 + UW163_RS17635 0.43 -1.0
335,768 + UW163_RS17635 0.43 -0.2
335,769 - UW163_RS17635 0.43 -0.7
335,772 + UW163_RS17635 0.44 -1.6
335,772 + UW163_RS17635 0.44 -0.8
335,773 - UW163_RS17635 0.44 -0.0
335,773 - UW163_RS17635 0.44 +0.4
335,773 - UW163_RS17635 0.44 -1.0
335,810 + UW163_RS17635 0.46 -0.3
335,811 - UW163_RS17635 0.46 +0.2
335,828 + UW163_RS17635 0.47 +0.3
335,828 + UW163_RS17635 0.47 -2.2
335,834 + UW163_RS17635 0.48 -0.2
335,834 + UW163_RS17635 0.48 -0.4
335,873 + UW163_RS17635 0.51 -0.3
335,873 + UW163_RS17635 0.51 -0.0
335,874 - UW163_RS17635 0.51 +0.5
335,874 - UW163_RS17635 0.51 +0.6
335,874 - UW163_RS17635 0.51 -0.5
335,981 + UW163_RS17635 0.58 -0.1
335,981 + UW163_RS17635 0.58 -0.6
335,982 - UW163_RS17635 0.58 +0.4
335,982 - UW163_RS17635 0.58 +0.0
335,982 - UW163_RS17635 0.58 -0.5
336,041 + UW163_RS17635 0.62 -0.9
336,159 + UW163_RS17635 0.70 +0.6
336,160 - UW163_RS17635 0.70 +0.1
336,160 - UW163_RS17635 0.70 -0.7
336,161 + UW163_RS17635 0.70 +1.7
336,161 + UW163_RS17635 0.70 -0.3
336,161 + UW163_RS17635 0.70 -0.2
336,162 - UW163_RS17635 0.70 -0.6
336,162 - UW163_RS17635 0.70 -0.5
336,162 - UW163_RS17635 0.70 -0.4
336,162 - +1.4
336,162 - UW163_RS17635 0.70 -1.5
336,171 + UW163_RS17635 0.71 +0.7
336,172 - UW163_RS17635 0.71 -0.0
336,172 - UW163_RS17635 0.71 -0.1
336,200 + UW163_RS17635 0.73 +1.8
336,200 + UW163_RS17635 0.73 -1.5
336,201 - UW163_RS17635 0.73 -0.5
336,408 + UW163_RS17635 0.87 -0.1
336,409 - UW163_RS17635 0.87 +1.0
336,409 - UW163_RS17635 0.87 -1.1
336,409 - UW163_RS17635 0.87 -0.5
336,409 - UW163_RS17635 0.87 -0.6
336,545 + +0.5
336,545 + -0.0
336,545 + -0.3
336,546 - -0.2
336,546 - -0.0
336,547 - -0.3
336,577 + -1.0
336,578 - -0.5
336,584 + -0.6
336,976 + +0.0
336,976 + +2.0
337,035 + +0.1
337,036 - -0.1
337,095 - +0.1
337,550 + UW163_RS17640 0.26 +0.4
337,550 + UW163_RS17640 0.26 -0.6
337,551 - UW163_RS17640 0.26 +1.0
337,568 + UW163_RS17640 0.27 +0.4
337,568 + UW163_RS17640 0.27 -1.3
337,568 + UW163_RS17640 0.27 -1.2
337,568 + UW163_RS17640 0.27 -0.0
337,569 - UW163_RS17640 0.27 -0.3

Or see this region's nucleotide sequence