Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS17355

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS17350 and UW163_RS17355 are separated by 549 nucleotidesUW163_RS17355 and UW163_RS17360 are separated by 19 nucleotides UW163_RS17350: UW163_RS17350 - hypothetical protein, at 276,648 to 278,177 _RS17350 UW163_RS17355: UW163_RS17355 - (2Fe-2S)-binding protein, at 278,727 to 279,185 _RS17355 UW163_RS17360: UW163_RS17360 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 279,205 to 281,454 _RS17360 Position (kb) 278 279 280Strain fitness (log2 ratio) -2 -1 0 1 2at 277.818 kb on + strand, within UW163_RS17350at 277.818 kb on + strand, within UW163_RS17350at 277.818 kb on + strand, within UW163_RS17350at 277.819 kb on - strand, within UW163_RS17350at 277.819 kb on - strand, within UW163_RS17350at 277.819 kb on - strand, within UW163_RS17350at 277.819 kb on - strand, within UW163_RS17350at 277.819 kb on - strand, within UW163_RS17350at 277.819 kb on - strand, within UW163_RS17350at 277.819 kb on - strand, within UW163_RS17350at 277.822 kb on + strand, within UW163_RS17350at 277.823 kb on - strand, within UW163_RS17350at 277.823 kb on - strandat 277.823 kb on - strand, within UW163_RS17350at 277.823 kb on - strand, within UW163_RS17350at 277.823 kb on - strand, within UW163_RS17350at 277.823 kb on - strand, within UW163_RS17350at 277.823 kb on - strand, within UW163_RS17350at 277.831 kb on + strand, within UW163_RS17350at 277.831 kb on + strand, within UW163_RS17350at 277.832 kb on - strand, within UW163_RS17350at 277.832 kb on - strand, within UW163_RS17350at 277.887 kb on + strand, within UW163_RS17350at 277.888 kb on + strand, within UW163_RS17350at 277.889 kb on - strand, within UW163_RS17350at 277.889 kb on - strand, within UW163_RS17350at 277.945 kb on + strand, within UW163_RS17350at 277.945 kb on + strand, within UW163_RS17350at 277.945 kb on + strand, within UW163_RS17350at 277.945 kb on + strand, within UW163_RS17350at 277.951 kb on + strandat 277.951 kb on + strand, within UW163_RS17350at 277.951 kb on + strand, within UW163_RS17350at 277.951 kb on + strand, within UW163_RS17350at 277.951 kb on + strand, within UW163_RS17350at 277.951 kb on + strand, within UW163_RS17350at 277.951 kb on + strand, within UW163_RS17350at 277.952 kb on - strand, within UW163_RS17350at 277.952 kb on - strand, within UW163_RS17350at 277.952 kb on - strand, within UW163_RS17350at 277.952 kb on - strand, within UW163_RS17350at 277.952 kb on - strand, within UW163_RS17350at 277.952 kb on - strand, within UW163_RS17350at 277.952 kb on - strand, within UW163_RS17350at 277.952 kb on - strand, within UW163_RS17350at 278.003 kb on + strand, within UW163_RS17350at 278.004 kb on - strand, within UW163_RS17350at 278.004 kb on - strand, within UW163_RS17350at 278.287 kb on - strandat 278.287 kb on - strandat 278.330 kb on + strandat 278.330 kb on + strandat 278.330 kb on + strandat 278.623 kb on + strandat 278.623 kb on + strandat 278.640 kb on + strandat 278.640 kb on + strandat 278.641 kb on - strandat 278.641 kb on - strandat 278.641 kb on - strandat 278.641 kb on - strandat 278.641 kb on - strandat 278.641 kb on - strandat 278.644 kb on - strandat 278.644 kb on - strandat 278.681 kb on + strandat 278.681 kb on + strandat 278.682 kb on - strandat 278.682 kb on - strandat 278.682 kb on - strandat 278.682 kb on - strandat 278.682 kb on - strandat 278.741 kb on + strandat 278.741 kb on + strandat 278.741 kb on + strandat 278.741 kb on + strandat 278.741 kb on + strandat 278.742 kb on - strandat 279.021 kb on + strand, within UW163_RS17355at 279.021 kb on + strandat 279.022 kb on - strand, within UW163_RS17355at 279.135 kb on + strand, within UW163_RS17355at 279.135 kb on + strand, within UW163_RS17355at 279.135 kb on + strand, within UW163_RS17355at 279.183 kb on + strandat 279.183 kb on + strandat 279.184 kb on - strandat 279.184 kb on - strandat 279.391 kb on - strandat 279.571 kb on + strand, within UW163_RS17360at 279.571 kb on + strand, within UW163_RS17360at 279.571 kb on + strand, within UW163_RS17360at 279.571 kb on + strand, within UW163_RS17360at 279.571 kb on + strand, within UW163_RS17360at 279.572 kb on - strand, within UW163_RS17360at 279.587 kb on - strand, within UW163_RS17360at 279.587 kb on - strand, within UW163_RS17360at 279.587 kb on - strand, within UW163_RS17360at 279.587 kb on - strand, within UW163_RS17360at 279.587 kb on - strand, within UW163_RS17360at 279.766 kb on + strand, within UW163_RS17360at 279.766 kb on + strand, within UW163_RS17360at 279.766 kb on + strand, within UW163_RS17360at 279.766 kb on + strand, within UW163_RS17360at 279.767 kb on - strand, within UW163_RS17360at 279.767 kb on - strand, within UW163_RS17360at 279.768 kb on - strand, within UW163_RS17360at 279.768 kb on - strand, within UW163_RS17360at 279.985 kb on + strand, within UW163_RS17360at 279.985 kb on + strand, within UW163_RS17360at 279.985 kb on + strand, within UW163_RS17360at 279.985 kb on + strand, within UW163_RS17360at 279.986 kb on - strand, within UW163_RS17360at 279.986 kb on - strand, within UW163_RS17360at 280.085 kb on - strand, within UW163_RS17360at 280.085 kb on - strand, within UW163_RS17360at 280.174 kb on + strand, within UW163_RS17360at 280.174 kb on + strand, within UW163_RS17360at 280.175 kb on - strand, within UW163_RS17360at 280.175 kb on - strand, within UW163_RS17360at 280.175 kb on - strand, within UW163_RS17360at 280.175 kb on - strand, within UW163_RS17360at 280.175 kb on - strand, within UW163_RS17360at 280.175 kb on - strand, within UW163_RS17360

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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277,818 + UW163_RS17350 0.76 -0.1
277,818 + UW163_RS17350 0.76 +0.4
277,818 + UW163_RS17350 0.76 -0.5
277,819 - UW163_RS17350 0.77 +0.0
277,819 - UW163_RS17350 0.77 -0.4
277,819 - UW163_RS17350 0.77 -2.1
277,819 - UW163_RS17350 0.77 -0.4
277,819 - UW163_RS17350 0.77 -0.3
277,819 - UW163_RS17350 0.77 +1.8
277,819 - UW163_RS17350 0.77 -1.0
277,822 + UW163_RS17350 0.77 -0.6
277,823 - UW163_RS17350 0.77 +1.3
277,823 - +0.4
277,823 - UW163_RS17350 0.77 -0.2
277,823 - UW163_RS17350 0.77 -0.1
277,823 - UW163_RS17350 0.77 -1.9
277,823 - UW163_RS17350 0.77 +0.2
277,823 - UW163_RS17350 0.77 -0.3
277,831 + UW163_RS17350 0.77 +0.1
277,831 + UW163_RS17350 0.77 +0.5
277,832 - UW163_RS17350 0.77 +0.8
277,832 - UW163_RS17350 0.77 -0.7
277,887 + UW163_RS17350 0.81 -0.6
277,888 + UW163_RS17350 0.81 -0.5
277,889 - UW163_RS17350 0.81 -0.7
277,889 - UW163_RS17350 0.81 +0.2
277,945 + UW163_RS17350 0.85 -0.6
277,945 + UW163_RS17350 0.85 +0.4
277,945 + UW163_RS17350 0.85 -0.7
277,945 + UW163_RS17350 0.85 +1.5
277,951 + -1.2
277,951 + UW163_RS17350 0.85 -0.3
277,951 + UW163_RS17350 0.85 -1.3
277,951 + UW163_RS17350 0.85 -0.6
277,951 + UW163_RS17350 0.85 -0.4
277,951 + UW163_RS17350 0.85 +0.1
277,951 + UW163_RS17350 0.85 +0.1
277,952 - UW163_RS17350 0.85 -0.5
277,952 - UW163_RS17350 0.85 -0.1
277,952 - UW163_RS17350 0.85 -1.2
277,952 - UW163_RS17350 0.85 -0.2
277,952 - UW163_RS17350 0.85 +0.5
277,952 - UW163_RS17350 0.85 -0.6
277,952 - UW163_RS17350 0.85 +1.1
277,952 - UW163_RS17350 0.85 +0.1
278,003 + UW163_RS17350 0.89 +0.1
278,004 - UW163_RS17350 0.89 +1.0
278,004 - UW163_RS17350 0.89 -1.2
278,287 - -0.0
278,287 - +0.2
278,330 + -0.4
278,330 + -0.2
278,330 + -0.0
278,623 + -0.7
278,623 + +0.8
278,640 + -1.1
278,640 + +0.5
278,641 - +0.6
278,641 - -1.0
278,641 - +2.0
278,641 - -1.7
278,641 - -0.6
278,641 - +0.2
278,644 - -0.0
278,644 - -0.1
278,681 + +0.1
278,681 + +0.1
278,682 - +0.4
278,682 - -0.2
278,682 - +0.1
278,682 - +0.1
278,682 - +0.4
278,741 + -1.2
278,741 + +0.4
278,741 + +0.3
278,741 + -0.0
278,741 + +0.4
278,742 - +1.1
279,021 + UW163_RS17355 0.64 -0.7
279,021 + +0.4
279,022 - UW163_RS17355 0.64 +0.1
279,135 + UW163_RS17355 0.89 -0.1
279,135 + UW163_RS17355 0.89 +1.4
279,135 + UW163_RS17355 0.89 -0.3
279,183 + -1.9
279,183 + +0.2
279,184 - -0.6
279,184 - +0.2
279,391 - +1.1
279,571 + UW163_RS17360 0.16 -0.2
279,571 + UW163_RS17360 0.16 -2.2
279,571 + UW163_RS17360 0.16 -0.8
279,571 + UW163_RS17360 0.16 +0.5
279,571 + UW163_RS17360 0.16 +0.1
279,572 - UW163_RS17360 0.16 +0.2
279,587 - UW163_RS17360 0.17 -1.2
279,587 - UW163_RS17360 0.17 +0.3
279,587 - UW163_RS17360 0.17 -0.4
279,587 - UW163_RS17360 0.17 -0.1
279,587 - UW163_RS17360 0.17 -0.0
279,766 + UW163_RS17360 0.25 -0.0
279,766 + UW163_RS17360 0.25 +0.4
279,766 + UW163_RS17360 0.25 -0.5
279,766 + UW163_RS17360 0.25 +0.6
279,767 - UW163_RS17360 0.25 -1.9
279,767 - UW163_RS17360 0.25 -0.2
279,768 - UW163_RS17360 0.25 -0.8
279,768 - UW163_RS17360 0.25 -0.2
279,985 + UW163_RS17360 0.35 -0.2
279,985 + UW163_RS17360 0.35 -1.2
279,985 + UW163_RS17360 0.35 -0.4
279,985 + UW163_RS17360 0.35 +0.6
279,986 - UW163_RS17360 0.35 -0.5
279,986 - UW163_RS17360 0.35 -0.4
280,085 - UW163_RS17360 0.39 +0.6
280,085 - UW163_RS17360 0.39 +0.6
280,174 + UW163_RS17360 0.43 -0.1
280,174 + UW163_RS17360 0.43 -0.2
280,175 - UW163_RS17360 0.43 -1.2
280,175 - UW163_RS17360 0.43 +0.3
280,175 - UW163_RS17360 0.43 +2.1
280,175 - UW163_RS17360 0.43 +0.2
280,175 - UW163_RS17360 0.43 -0.1
280,175 - UW163_RS17360 0.43 -0.6

Or see this region's nucleotide sequence