Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS13830

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS13820 and UW163_RS13825 are separated by 121 nucleotidesUW163_RS13825 and UW163_RS13830 overlap by 14 nucleotidesUW163_RS13830 and UW163_RS13835 are separated by 5 nucleotidesUW163_RS13835 and UW163_RS13840 are separated by 155 nucleotides UW163_RS13820: UW163_RS13820 - SsrA-binding protein SmpB, at 2,976,284 to 2,976,730 _RS13820 UW163_RS13825: UW163_RS13825 - ubiquinone-binding protein, at 2,976,852 to 2,977,289 _RS13825 UW163_RS13830: UW163_RS13830 - hypothetical protein, at 2,977,276 to 2,977,632 _RS13830 UW163_RS13835: UW163_RS13835 - DUF4124 domain-containing protein, at 2,977,638 to 2,978,177 _RS13835 UW163_RS13840: UW163_RS13840 - EamA/RhaT family transporter, at 2,978,333 to 2,979,265 _RS13840 Position (kb) 2977 2978Strain fitness (log2 ratio) -1 0 1at 2976.930 kb on + strand, within UW163_RS13825at 2977.298 kb on - strandat 2977.444 kb on + strand, within UW163_RS13830at 2977.709 kb on + strand, within UW163_RS13835at 2977.711 kb on + strand, within UW163_RS13835at 2977.711 kb on + strand, within UW163_RS13835at 2977.712 kb on - strand, within UW163_RS13835at 2977.765 kb on + strand, within UW163_RS13835at 2978.281 kb on - strandat 2978.436 kb on + strand, within UW163_RS13840

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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2,976,930 + UW163_RS13825 0.18 -1.1
2,977,298 - -0.1
2,977,444 + UW163_RS13830 0.47 -0.4
2,977,709 + UW163_RS13835 0.13 +0.3
2,977,711 + UW163_RS13835 0.14 +0.3
2,977,711 + UW163_RS13835 0.14 +0.3
2,977,712 - UW163_RS13835 0.14 -1.0
2,977,765 + UW163_RS13835 0.24 -0.9
2,978,281 - +0.9
2,978,436 + UW163_RS13840 0.11 +0.1

Or see this region's nucleotide sequence