Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS11875

Experiment: CPG

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntUW163_RS11865 and UW163_RS11870 are separated by 201 nucleotidesUW163_RS11870 and UW163_RS11875 are separated by 115 nucleotidesUW163_RS11875 and UW163_RS11880 are separated by 200 nucleotides UW163_RS11865: UW163_RS11865 - septum formation protein Maf, at 2,554,127 to 2,554,723 _RS11865 UW163_RS11870: UW163_RS11870 - metal-binding protein, at 2,554,925 to 2,555,464 _RS11870 UW163_RS11875: UW163_RS11875 - 50S ribosomal protein L32, at 2,555,580 to 2,555,759 _RS11875 UW163_RS11880: UW163_RS11880 - phosphate acyltransferase PlsX, at 2,555,960 to 2,557,024 _RS11880 Position (kb) 2555 2556Strain fitness (log2 ratio) -1 0 1at 2554.723 kb on + strandat 2555.081 kb on - strand, within UW163_RS11870at 2555.081 kb on - strand, within UW163_RS11870at 2555.462 kb on + strandat 2555.498 kb on + strandat 2555.905 kb on + strandat 2555.905 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction CPG
remove
2,554,723 + -0.6
2,555,081 - UW163_RS11870 0.29 +0.6
2,555,081 - UW163_RS11870 0.29 -0.4
2,555,462 + -0.1
2,555,498 + +1.0
2,555,905 + +0.2
2,555,905 + -0.0

Or see this region's nucleotide sequence