Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS08470

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS08460 and UW163_RS08465 are separated by 107 nucleotidesUW163_RS08465 and UW163_RS08470 are separated by 76 nucleotidesUW163_RS08470 and UW163_RS08475 are separated by 44 nucleotidesUW163_RS08475 and UW163_RS08480 are separated by 60 nucleotides UW163_RS08460: UW163_RS08460 - UDP-N-acetylmuramate dehydrogenase, at 1,827,229 to 1,828,257 _RS08460 UW163_RS08465: UW163_RS08465 - YajQ family cyclic di-GMP-binding protein, at 1,828,365 to 1,828,850 _RS08465 UW163_RS08470: UW163_RS08470 - hypothetical protein, at 1,828,927 to 1,829,049 _RS08470 UW163_RS08475: UW163_RS08475 - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 1,829,094 to 1,829,717 _RS08475 UW163_RS08480: UW163_RS08480 - Cys-tRNA(Pro) deacylase, at 1,829,778 to 1,830,269 _RS08480 Position (kb) 1828 1829 1830Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1828.341 kb on - strandat 1828.341 kb on - strandat 1828.385 kb on - strandat 1828.599 kb on + strand, within UW163_RS08465at 1829.718 kb on - strandat 1829.718 kb on - strandat 1829.718 kb on - strandat 1829.749 kb on + strandat 1829.750 kb on - strandat 1829.878 kb on + strand, within UW163_RS08480at 1829.878 kb on + strand, within UW163_RS08480at 1829.878 kb on + strand, within UW163_RS08480at 1829.879 kb on - strand, within UW163_RS08480at 1829.966 kb on - strand, within UW163_RS08480

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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1,828,341 - -0.2
1,828,341 - -3.1
1,828,385 - +0.2
1,828,599 + UW163_RS08465 0.48 -0.6
1,829,718 - +1.8
1,829,718 - -0.0
1,829,718 - -1.0
1,829,749 + -0.8
1,829,750 - +0.9
1,829,878 + UW163_RS08480 0.20 -0.0
1,829,878 + UW163_RS08480 0.20 -0.2
1,829,878 + UW163_RS08480 0.20 -0.2
1,829,879 - UW163_RS08480 0.21 -0.2
1,829,966 - UW163_RS08480 0.38 +0.9

Or see this region's nucleotide sequence