Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS06720 and UW163_RS06725 are separated by 28 nucleotides UW163_RS06725 and UW163_RS06730 are separated by 3 nucleotides UW163_RS06730 and UW163_RS06735 are separated by 154 nucleotides UW163_RS06735 and UW163_RS06740 are separated by 65 nucleotides
UW163_RS06720: UW163_RS06720 - ABC transporter permease, at 1,444,003 to 1,444,770
_RS06720
UW163_RS06725: UW163_RS06725 - outer membrane lipid asymmetry maintenance protein MlaD, at 1,444,799 to 1,445,317
_RS06725
UW163_RS06730: UW163_RS06730 - ABC transporter, at 1,445,321 to 1,446,130
_RS06730
UW163_RS06735: UW163_RS06735 - hypothetical protein, at 1,446,285 to 1,446,920
_RS06735
UW163_RS06740: UW163_RS06740 - STAS domain-containing protein, at 1,446,986 to 1,447,300
_RS06740
Position (kb)
1445
1446
1447 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1444.501 kb on + strand at 1444.805 kb on - strand at 1444.916 kb on + strand, within UW163_RS06725 at 1445.126 kb on + strand, within UW163_RS06725 at 1445.234 kb on + strand, within UW163_RS06725 at 1445.311 kb on + strand at 1445.312 kb on - strand at 1445.513 kb on + strand, within UW163_RS06730 at 1445.768 kb on + strand, within UW163_RS06730 at 1445.768 kb on + strand, within UW163_RS06730 at 1446.090 kb on - strand at 1446.142 kb on + strand at 1446.142 kb on + strand at 1446.143 kb on - strand at 1446.271 kb on + strand at 1446.284 kb on + strand at 1446.285 kb on - strand at 1446.285 kb on - strand at 1446.651 kb on + strand at 1446.774 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 1,444,501 + +0.2 1,444,805 - +2.2 1,444,916 + UW163_RS06725 0.23 +0.2 1,445,126 + UW163_RS06725 0.63 -1.3 1,445,234 + UW163_RS06725 0.84 -0.6 1,445,311 + -0.6 1,445,312 - +0.2 1,445,513 + UW163_RS06730 0.24 -2.1 1,445,768 + UW163_RS06730 0.55 -2.1 1,445,768 + UW163_RS06730 0.55 +0.5 1,446,090 - -0.1 1,446,142 + +0.2 1,446,142 + +0.7 1,446,143 - +0.2 1,446,271 + +0.1 1,446,284 + -0.2 1,446,285 - -0.3 1,446,285 - +0.4 1,446,651 + +0.2 1,446,774 + -0.3
Or see this region's nucleotide sequence