Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS06730

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS06720 and UW163_RS06725 are separated by 28 nucleotidesUW163_RS06725 and UW163_RS06730 are separated by 3 nucleotidesUW163_RS06730 and UW163_RS06735 are separated by 154 nucleotidesUW163_RS06735 and UW163_RS06740 are separated by 65 nucleotides UW163_RS06720: UW163_RS06720 - ABC transporter permease, at 1,444,003 to 1,444,770 _RS06720 UW163_RS06725: UW163_RS06725 - outer membrane lipid asymmetry maintenance protein MlaD, at 1,444,799 to 1,445,317 _RS06725 UW163_RS06730: UW163_RS06730 - ABC transporter, at 1,445,321 to 1,446,130 _RS06730 UW163_RS06735: UW163_RS06735 - hypothetical protein, at 1,446,285 to 1,446,920 _RS06735 UW163_RS06740: UW163_RS06740 - STAS domain-containing protein, at 1,446,986 to 1,447,300 _RS06740 Position (kb) 1445 1446 1447Strain fitness (log2 ratio) -2 -1 0 1 2at 1444.501 kb on + strandat 1444.805 kb on - strandat 1444.916 kb on + strand, within UW163_RS06725at 1445.126 kb on + strand, within UW163_RS06725at 1445.234 kb on + strand, within UW163_RS06725at 1445.311 kb on + strandat 1445.312 kb on - strandat 1445.513 kb on + strand, within UW163_RS06730at 1445.768 kb on + strand, within UW163_RS06730at 1445.768 kb on + strand, within UW163_RS06730at 1446.090 kb on - strandat 1446.142 kb on + strandat 1446.142 kb on + strandat 1446.143 kb on - strandat 1446.271 kb on + strandat 1446.284 kb on + strandat 1446.285 kb on - strandat 1446.285 kb on - strandat 1446.651 kb on + strandat 1446.774 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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1,444,501 + +0.2
1,444,805 - +2.2
1,444,916 + UW163_RS06725 0.23 +0.2
1,445,126 + UW163_RS06725 0.63 -1.3
1,445,234 + UW163_RS06725 0.84 -0.6
1,445,311 + -0.6
1,445,312 - +0.2
1,445,513 + UW163_RS06730 0.24 -2.1
1,445,768 + UW163_RS06730 0.55 -2.1
1,445,768 + UW163_RS06730 0.55 +0.5
1,446,090 - -0.1
1,446,142 + +0.2
1,446,142 + +0.7
1,446,143 - +0.2
1,446,271 + +0.1
1,446,284 + -0.2
1,446,285 - -0.3
1,446,285 - +0.4
1,446,651 + +0.2
1,446,774 + -0.3

Or see this region's nucleotide sequence