Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS05580

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS24500 and UW163_RS05575 are separated by 35 nucleotidesUW163_RS05575 and UW163_RS05580 overlap by 4 nucleotidesUW163_RS05580 and UW163_RS05585 are separated by 12 nucleotides UW163_RS24500: UW163_RS24500 - hypothetical protein, at 1,189,343 to 1,191,086 _RS24500 UW163_RS05575: UW163_RS05575 - adenylyl-sulfate kinase, at 1,191,122 to 1,191,676 _RS05575 UW163_RS05580: UW163_RS05580 - alpha/beta hydrolase, at 1,191,673 to 1,192,575 _RS05580 UW163_RS05585: UW163_RS05585 - glycosyl transferase family 8, at 1,192,588 to 1,193,751 _RS05585 Position (kb) 1191 1192 1193Strain fitness (log2 ratio) -2 -1 0 1at 1190.716 kb on - strand, within UW163_RS24500at 1190.817 kb on + strand, within UW163_RS24500at 1190.817 kb on + strand, within UW163_RS24500at 1190.817 kb on + strand, within UW163_RS24500at 1190.817 kb on + strand, within UW163_RS24500at 1190.817 kb on + strand, within UW163_RS24500at 1190.818 kb on - strand, within UW163_RS24500at 1190.818 kb on - strand, within UW163_RS24500at 1190.818 kb on - strand, within UW163_RS24500at 1190.818 kb on - strand, within UW163_RS24500at 1190.818 kb on - strand, within UW163_RS24500at 1190.889 kb on + strand, within UW163_RS24500at 1190.889 kb on + strand, within UW163_RS24500at 1190.889 kb on + strand, within UW163_RS24500at 1190.889 kb on + strand, within UW163_RS24500at 1190.890 kb on - strand, within UW163_RS24500at 1190.890 kb on - strand, within UW163_RS24500at 1190.890 kb on - strand, within UW163_RS24500at 1190.890 kb on - strand, within UW163_RS24500at 1190.890 kb on - strand, within UW163_RS24500at 1190.890 kb on - strand, within UW163_RS24500at 1190.901 kb on + strand, within UW163_RS24500at 1190.902 kb on - strand, within UW163_RS24500at 1190.902 kb on - strand, within UW163_RS24500at 1190.902 kb on - strand, within UW163_RS24500at 1190.971 kb on - strandat 1190.971 kb on - strandat 1191.249 kb on + strand, within UW163_RS05575at 1191.249 kb on + strand, within UW163_RS05575at 1191.250 kb on - strand, within UW163_RS05575at 1191.250 kb on - strand, within UW163_RS05575at 1191.250 kb on - strand, within UW163_RS05575at 1191.304 kb on - strand, within UW163_RS05575at 1191.415 kb on - strand, within UW163_RS05575at 1191.862 kb on - strand, within UW163_RS05580at 1192.039 kb on + strand, within UW163_RS05580at 1192.039 kb on + strand, within UW163_RS05580at 1192.040 kb on - strand, within UW163_RS05580at 1192.040 kb on - strand, within UW163_RS05580at 1192.040 kb on - strand, within UW163_RS05580at 1192.040 kb on - strand, within UW163_RS05580at 1192.040 kb on - strand, within UW163_RS05580at 1192.046 kb on - strand, within UW163_RS05580at 1192.080 kb on + strand, within UW163_RS05580at 1192.081 kb on - strand, within UW163_RS05580at 1192.081 kb on - strand, within UW163_RS05580at 1192.169 kb on + strand, within UW163_RS05580at 1192.229 kb on + strandat 1192.229 kb on + strand, within UW163_RS05580at 1192.230 kb on - strand, within UW163_RS05580at 1192.230 kb on - strand, within UW163_RS05580at 1192.230 kb on - strand, within UW163_RS05580at 1192.230 kb on - strand, within UW163_RS05580at 1192.230 kb on - strand, within UW163_RS05580at 1192.346 kb on + strand, within UW163_RS05580at 1192.346 kb on + strand, within UW163_RS05580at 1192.346 kb on + strand, within UW163_RS05580at 1192.346 kb on + strand, within UW163_RS05580at 1192.346 kb on + strand, within UW163_RS05580at 1192.347 kb on - strand, within UW163_RS05580at 1192.347 kb on - strand, within UW163_RS05580at 1192.347 kb on - strand, within UW163_RS05580at 1192.347 kb on - strand, within UW163_RS05580at 1192.347 kb on - strand, within UW163_RS05580at 1192.347 kb on - strand, within UW163_RS05580at 1192.347 kb on - strandat 1192.347 kb on - strand, within UW163_RS05580at 1192.385 kb on + strand, within UW163_RS05580at 1193.102 kb on + strand, within UW163_RS05585at 1193.102 kb on + strand, within UW163_RS05585at 1193.102 kb on + strand, within UW163_RS05585at 1193.103 kb on - strand, within UW163_RS05585at 1193.103 kb on - strand, within UW163_RS05585at 1193.103 kb on - strand, within UW163_RS05585at 1193.226 kb on + strand, within UW163_RS05585at 1193.441 kb on + strand, within UW163_RS05585at 1193.447 kb on + strand, within UW163_RS05585at 1193.448 kb on - strand, within UW163_RS05585at 1193.453 kb on + strand, within UW163_RS05585at 1193.453 kb on + strand, within UW163_RS05585at 1193.454 kb on - strand, within UW163_RS05585at 1193.454 kb on - strand, within UW163_RS05585at 1193.454 kb on - strand, within UW163_RS05585

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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1,190,716 - UW163_RS24500 0.79 -1.2
1,190,817 + UW163_RS24500 0.85 +0.4
1,190,817 + UW163_RS24500 0.85 -0.5
1,190,817 + UW163_RS24500 0.85 +0.4
1,190,817 + UW163_RS24500 0.85 +0.0
1,190,817 + UW163_RS24500 0.85 -0.4
1,190,818 - UW163_RS24500 0.85 -0.2
1,190,818 - UW163_RS24500 0.85 -0.0
1,190,818 - UW163_RS24500 0.85 +0.1
1,190,818 - UW163_RS24500 0.85 -0.4
1,190,818 - UW163_RS24500 0.85 -0.4
1,190,889 + UW163_RS24500 0.89 -0.3
1,190,889 + UW163_RS24500 0.89 +0.0
1,190,889 + UW163_RS24500 0.89 -0.2
1,190,889 + UW163_RS24500 0.89 +0.3
1,190,890 - UW163_RS24500 0.89 -0.8
1,190,890 - UW163_RS24500 0.89 +0.5
1,190,890 - UW163_RS24500 0.89 -1.1
1,190,890 - UW163_RS24500 0.89 -0.4
1,190,890 - UW163_RS24500 0.89 -0.6
1,190,890 - UW163_RS24500 0.89 +0.4
1,190,901 + UW163_RS24500 0.89 +0.1
1,190,902 - UW163_RS24500 0.89 -0.5
1,190,902 - UW163_RS24500 0.89 -1.0
1,190,902 - UW163_RS24500 0.89 -0.1
1,190,971 - -0.5
1,190,971 - -0.1
1,191,249 + UW163_RS05575 0.23 +0.4
1,191,249 + UW163_RS05575 0.23 -0.1
1,191,250 - UW163_RS05575 0.23 -1.7
1,191,250 - UW163_RS05575 0.23 -0.5
1,191,250 - UW163_RS05575 0.23 -0.8
1,191,304 - UW163_RS05575 0.33 -0.6
1,191,415 - UW163_RS05575 0.53 +0.1
1,191,862 - UW163_RS05580 0.21 +0.2
1,192,039 + UW163_RS05580 0.41 +0.1
1,192,039 + UW163_RS05580 0.41 -0.2
1,192,040 - UW163_RS05580 0.41 -0.4
1,192,040 - UW163_RS05580 0.41 -0.6
1,192,040 - UW163_RS05580 0.41 -0.0
1,192,040 - UW163_RS05580 0.41 -1.6
1,192,040 - UW163_RS05580 0.41 -0.8
1,192,046 - UW163_RS05580 0.41 -0.6
1,192,080 + UW163_RS05580 0.45 -1.1
1,192,081 - UW163_RS05580 0.45 -0.4
1,192,081 - UW163_RS05580 0.45 -0.1
1,192,169 + UW163_RS05580 0.55 -0.4
1,192,229 + +0.4
1,192,229 + UW163_RS05580 0.62 -0.5
1,192,230 - UW163_RS05580 0.62 -0.5
1,192,230 - UW163_RS05580 0.62 -0.7
1,192,230 - UW163_RS05580 0.62 -0.3
1,192,230 - UW163_RS05580 0.62 +1.0
1,192,230 - UW163_RS05580 0.62 -0.5
1,192,346 + UW163_RS05580 0.75 -0.4
1,192,346 + UW163_RS05580 0.75 -0.4
1,192,346 + UW163_RS05580 0.75 +0.7
1,192,346 + UW163_RS05580 0.75 -0.5
1,192,346 + UW163_RS05580 0.75 -0.2
1,192,347 - UW163_RS05580 0.75 -0.5
1,192,347 - UW163_RS05580 0.75 +0.9
1,192,347 - UW163_RS05580 0.75 -1.8
1,192,347 - UW163_RS05580 0.75 +0.9
1,192,347 - UW163_RS05580 0.75 +1.1
1,192,347 - UW163_RS05580 0.75 +0.9
1,192,347 - +0.4
1,192,347 - UW163_RS05580 0.75 -0.4
1,192,385 + UW163_RS05580 0.79 -1.1
1,193,102 + UW163_RS05585 0.44 -0.4
1,193,102 + UW163_RS05585 0.44 +1.6
1,193,102 + UW163_RS05585 0.44 +0.2
1,193,103 - UW163_RS05585 0.44 +0.4
1,193,103 - UW163_RS05585 0.44 -0.1
1,193,103 - UW163_RS05585 0.44 -0.6
1,193,226 + UW163_RS05585 0.55 -0.6
1,193,441 + UW163_RS05585 0.73 +0.1
1,193,447 + UW163_RS05585 0.74 -0.1
1,193,448 - UW163_RS05585 0.74 -0.1
1,193,453 + UW163_RS05585 0.74 -1.6
1,193,453 + UW163_RS05585 0.74 +1.0
1,193,454 - UW163_RS05585 0.74 -0.4
1,193,454 - UW163_RS05585 0.74 -1.5
1,193,454 - UW163_RS05585 0.74 -0.5

Or see this region's nucleotide sequence