Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS03145 and UW163_RS03150 are separated by 19 nucleotides UW163_RS03150 and UW163_RS03155 are separated by 16 nucleotides UW163_RS03155 and UW163_RS03160 overlap by 4 nucleotides UW163_RS03160 and UW163_RS03165 are separated by 74 nucleotides
UW163_RS03145: UW163_RS03145 - hydroxymethylglutaryl-CoA lyase, at 648,071 to 649,000
_RS03145
UW163_RS03150: UW163_RS03150 - YbaK/EbsC family protein, at 649,020 to 649,523
_RS03150
UW163_RS03155: UW163_RS03155 - DUF1289 domain-containing protein, at 649,540 to 649,806
_RS03155
UW163_RS03160: UW163_RS03160 - MBL fold metallo-hydrolase, at 649,803 to 650,765
_RS03160
UW163_RS03165: UW163_RS03165 - hypothetical protein, at 650,840 to 653,647
_RS03165
Position (kb) 649
650
651 Strain fitness (log2 ratio) -2
-1
0
1
2 at 648.839 kb on + strand, within UW163_RS03145 at 648.839 kb on + strand, within UW163_RS03145 at 648.839 kb on + strand, within UW163_RS03145 at 648.839 kb on + strand, within UW163_RS03145 at 648.840 kb on - strand, within UW163_RS03145 at 648.995 kb on - strand at 648.995 kb on - strand at 649.335 kb on + strand, within UW163_RS03150 at 649.336 kb on - strand, within UW163_RS03150 at 650.139 kb on + strand, within UW163_RS03160 at 650.293 kb on - strand, within UW163_RS03160 at 650.841 kb on + strand at 650.876 kb on + strand at 650.898 kb on + strand at 650.898 kb on + strand at 650.898 kb on + strand at 650.899 kb on - strand at 651.051 kb on + strand at 651.194 kb on + strand, within UW163_RS03165 at 651.195 kb on + strand, within UW163_RS03165 at 651.375 kb on + strand, within UW163_RS03165 at 651.375 kb on + strand, within UW163_RS03165 at 651.375 kb on + strand, within UW163_RS03165 at 651.375 kb on + strand, within UW163_RS03165 at 651.385 kb on + strand, within UW163_RS03165 at 651.493 kb on + strand, within UW163_RS03165 at 651.494 kb on - strand, within UW163_RS03165 at 651.494 kb on - strand, within UW163_RS03165 at 651.494 kb on - strand, within UW163_RS03165 at 651.494 kb on - strand, within UW163_RS03165 at 651.611 kb on + strand, within UW163_RS03165 at 651.612 kb on - strand, within UW163_RS03165 at 651.612 kb on - strand, within UW163_RS03165
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 648,839 + UW163_RS03145 0.83 +1.2 648,839 + UW163_RS03145 0.83 +0.6 648,839 + UW163_RS03145 0.83 -1.6 648,839 + UW163_RS03145 0.83 -0.9 648,840 - UW163_RS03145 0.83 -1.6 648,995 - -1.4 648,995 - -0.0 649,335 + UW163_RS03150 0.62 -0.8 649,336 - UW163_RS03150 0.63 -0.2 650,139 + UW163_RS03160 0.35 +1.8 650,293 - UW163_RS03160 0.51 +0.1 650,841 + -0.2 650,876 + +0.0 650,898 + -0.0 650,898 + +0.1 650,898 + +0.6 650,899 - -2.3 651,051 + -0.1 651,194 + UW163_RS03165 0.13 -1.0 651,195 + UW163_RS03165 0.13 +0.2 651,375 + UW163_RS03165 0.19 +0.5 651,375 + UW163_RS03165 0.19 -0.5 651,375 + UW163_RS03165 0.19 +0.3 651,375 + UW163_RS03165 0.19 -0.4 651,385 + UW163_RS03165 0.19 +0.2 651,493 + UW163_RS03165 0.23 -0.9 651,494 - UW163_RS03165 0.23 -2.1 651,494 - UW163_RS03165 0.23 +0.2 651,494 - UW163_RS03165 0.23 +0.2 651,494 - UW163_RS03165 0.23 +0.2 651,611 + UW163_RS03165 0.27 -0.2 651,612 - UW163_RS03165 0.27 +0.5 651,612 - UW163_RS03165 0.27 +0.1
Or see this region's nucleotide sequence