Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS02935 and UW163_RS02940 are separated by 84 nucleotides UW163_RS02940 and UW163_RS02945 overlap by 35 nucleotides
UW163_RS02935: UW163_RS02935 - FAA hydrolase family protein, at 607,615 to 608,607
_RS02935
UW163_RS02940: UW163_RS02940 - IclR family transcriptional regulator, at 608,692 to 609,564
_RS02940
UW163_RS02945: UW163_RS02945 - DUF3108 domain-containing protein, at 609,530 to 610,678
_RS02945
Position (kb) 608
609
610 Strain fitness (log2 ratio) -1
0
1 at 607.785 kb on - strand, within UW163_RS02935 at 608.267 kb on + strand, within UW163_RS02935 at 608.267 kb on + strand, within UW163_RS02935 at 608.268 kb on - strand, within UW163_RS02935 at 608.268 kb on - strand, within UW163_RS02935 at 608.436 kb on + strand, within UW163_RS02935 at 608.644 kb on - strand at 608.644 kb on - strand at 608.644 kb on - strand at 608.644 kb on - strand at 608.660 kb on - strand at 608.660 kb on - strand at 609.202 kb on + strand, within UW163_RS02940 at 609.310 kb on + strand, within UW163_RS02940 at 609.311 kb on - strand, within UW163_RS02940 at 609.311 kb on - strand, within UW163_RS02940 at 609.508 kb on + strand at 609.509 kb on + strand at 609.535 kb on + strand at 610.022 kb on + strand, within UW163_RS02945 at 610.022 kb on + strand, within UW163_RS02945 at 610.023 kb on - strand, within UW163_RS02945 at 610.082 kb on + strand, within UW163_RS02945 at 610.083 kb on - strand, within UW163_RS02945
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 607,785 - UW163_RS02935 0.17 -0.4 608,267 + UW163_RS02935 0.66 -0.1 608,267 + UW163_RS02935 0.66 -0.1 608,268 - UW163_RS02935 0.66 +1.4 608,268 - UW163_RS02935 0.66 -0.2 608,436 + UW163_RS02935 0.83 -0.1 608,644 - -0.4 608,644 - -0.5 608,644 - -0.8 608,644 - -1.4 608,660 - -0.6 608,660 - -0.1 609,202 + UW163_RS02940 0.58 -0.1 609,310 + UW163_RS02940 0.71 +0.7 609,311 - UW163_RS02940 0.71 +0.7 609,311 - UW163_RS02940 0.71 +0.9 609,508 + +0.6 609,509 + +0.6 609,535 + +0.5 610,022 + UW163_RS02945 0.43 +1.2 610,022 + UW163_RS02945 0.43 -0.3 610,023 - UW163_RS02945 0.43 +0.2 610,082 + UW163_RS02945 0.48 +0.2 610,083 - UW163_RS02945 0.48 +0.4
Or see this region's nucleotide sequence