Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS02895 and UW163_RS02900 are separated by 396 nucleotides UW163_RS02900 and UW163_RS02905 are separated by 9 nucleotides
UW163_RS02895: UW163_RS02895 - hypothetical protein, at 599,903 to 600,772
_RS02895
UW163_RS02900: UW163_RS02900 - glutathione peroxidase, at 601,169 to 601,882
_RS02900
UW163_RS02905: UW163_RS02905 - patatin, at 601,892 to 603,067
_RS02905
Position (kb) 601
602 Strain fitness (log2 ratio) -2
-1
0
1 at 600.856 kb on + strand at 600.903 kb on - strand at 601.041 kb on - strand at 601.042 kb on + strand at 601.042 kb on + strand at 601.042 kb on + strand at 601.042 kb on + strand at 601.043 kb on - strand at 601.118 kb on + strand at 601.119 kb on - strand at 601.119 kb on - strand at 601.119 kb on - strand at 601.190 kb on - strand at 601.480 kb on - strand, within UW163_RS02900 at 601.499 kb on + strand, within UW163_RS02900 at 601.499 kb on + strand, within UW163_RS02900 at 601.500 kb on - strand, within UW163_RS02900 at 601.500 kb on - strand, within UW163_RS02900 at 601.500 kb on - strand, within UW163_RS02900 at 601.500 kb on - strand, within UW163_RS02900 at 601.514 kb on + strand, within UW163_RS02900 at 601.515 kb on - strand, within UW163_RS02900 at 601.515 kb on - strand, within UW163_RS02900 at 601.515 kb on - strand, within UW163_RS02900 at 601.542 kb on - strand, within UW163_RS02900 at 601.640 kb on + strand, within UW163_RS02900 at 601.640 kb on + strand, within UW163_RS02900 at 601.649 kb on + strand, within UW163_RS02900 at 601.712 kb on + strand, within UW163_RS02900 at 601.712 kb on + strand, within UW163_RS02900 at 601.712 kb on + strand, within UW163_RS02900 at 601.712 kb on + strand, within UW163_RS02900 at 601.767 kb on - strand, within UW163_RS02900 at 601.923 kb on + strand at 602.017 kb on - strand, within UW163_RS02905 at 602.017 kb on - strand, within UW163_RS02905 at 602.325 kb on + strand, within UW163_RS02905 at 602.325 kb on + strand, within UW163_RS02905 at 602.326 kb on - strand, within UW163_RS02905 at 602.584 kb on - strand, within UW163_RS02905 at 602.610 kb on + strand, within UW163_RS02905 at 602.611 kb on - strand, within UW163_RS02905 at 602.611 kb on - strand, within UW163_RS02905
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 600,856 + +0.2 600,903 - +0.1 601,041 - -1.7 601,042 + +0.2 601,042 + +0.5 601,042 + +0.1 601,042 + -0.2 601,043 - +0.1 601,118 + -0.8 601,119 - +0.2 601,119 - +0.5 601,119 - -1.0 601,190 - -1.2 601,480 - UW163_RS02900 0.44 +0.3 601,499 + UW163_RS02900 0.46 +0.7 601,499 + UW163_RS02900 0.46 +0.9 601,500 - UW163_RS02900 0.46 -2.1 601,500 - UW163_RS02900 0.46 +0.0 601,500 - UW163_RS02900 0.46 -0.6 601,500 - UW163_RS02900 0.46 -1.0 601,514 + UW163_RS02900 0.48 -2.1 601,515 - UW163_RS02900 0.48 -0.3 601,515 - UW163_RS02900 0.48 +0.3 601,515 - UW163_RS02900 0.48 -0.3 601,542 - UW163_RS02900 0.52 -0.0 601,640 + UW163_RS02900 0.66 -2.1 601,640 + UW163_RS02900 0.66 -0.6 601,649 + UW163_RS02900 0.67 -0.1 601,712 + UW163_RS02900 0.76 +0.7 601,712 + UW163_RS02900 0.76 -0.8 601,712 + UW163_RS02900 0.76 -0.5 601,712 + UW163_RS02900 0.76 -1.8 601,767 - UW163_RS02900 0.84 -0.0 601,923 + -0.5 602,017 - UW163_RS02905 0.11 -0.1 602,017 - UW163_RS02905 0.11 +0.3 602,325 + UW163_RS02905 0.37 -0.4 602,325 + UW163_RS02905 0.37 +0.2 602,326 - UW163_RS02905 0.37 -0.8 602,584 - UW163_RS02905 0.59 -0.6 602,610 + UW163_RS02905 0.61 +0.2 602,611 - UW163_RS02905 0.61 -0.0 602,611 - UW163_RS02905 0.61 +0.2
Or see this region's nucleotide sequence