Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS01260 and UW163_RS01265 are separated by 11 nucleotides UW163_RS01265 and UW163_RS01270 are separated by 27 nucleotides UW163_RS01270 and UW163_RS01275 are separated by 240 nucleotides
UW163_RS01260: UW163_RS01260 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 253,612 to 254,718
_RS01260
UW163_RS01265: UW163_RS01265 - S-formylglutathione hydrolase, at 254,730 to 255,614
_RS01265
UW163_RS01270: UW163_RS01270 - hypothetical protein, at 255,642 to 256,049
_RS01270
UW163_RS01275: UW163_RS01275 - paraquat-inducible membrane protein A, at 256,290 to 257,105
_RS01275
Position (kb) 254
255
256 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 253.741 kb on + strand, within UW163_RS01260 at 253.741 kb on + strand, within UW163_RS01260 at 253.742 kb on - strand, within UW163_RS01260 at 253.742 kb on - strand, within UW163_RS01260 at 253.742 kb on - strand, within UW163_RS01260 at 253.744 kb on + strand, within UW163_RS01260 at 253.745 kb on - strand, within UW163_RS01260 at 253.745 kb on - strand, within UW163_RS01260 at 253.745 kb on - strand, within UW163_RS01260 at 253.874 kb on - strand, within UW163_RS01260 at 254.014 kb on + strand, within UW163_RS01260 at 254.014 kb on + strand, within UW163_RS01260 at 254.014 kb on + strand, within UW163_RS01260 at 254.014 kb on + strand, within UW163_RS01260 at 254.014 kb on + strand, within UW163_RS01260 at 254.015 kb on - strand, within UW163_RS01260 at 254.015 kb on - strand, within UW163_RS01260 at 254.015 kb on - strand, within UW163_RS01260 at 254.015 kb on - strand, within UW163_RS01260 at 254.015 kb on - strand, within UW163_RS01260 at 254.107 kb on + strand, within UW163_RS01260 at 254.108 kb on - strand, within UW163_RS01260 at 254.108 kb on - strand, within UW163_RS01260 at 254.383 kb on + strand, within UW163_RS01260 at 254.384 kb on - strand, within UW163_RS01260 at 254.596 kb on + strand, within UW163_RS01260 at 254.596 kb on + strand, within UW163_RS01260 at 254.597 kb on - strand, within UW163_RS01260 at 254.713 kb on + strand at 254.713 kb on + strand at 254.713 kb on + strand at 254.713 kb on + strand at 254.714 kb on - strand at 254.714 kb on - strand at 254.714 kb on - strand at 254.714 kb on - strand at 254.716 kb on + strand at 254.716 kb on + strand at 254.868 kb on + strand, within UW163_RS01265 at 254.868 kb on + strand, within UW163_RS01265 at 254.869 kb on - strand, within UW163_RS01265 at 254.916 kb on + strand, within UW163_RS01265 at 254.917 kb on - strand, within UW163_RS01265 at 255.084 kb on + strand, within UW163_RS01265 at 255.084 kb on + strand, within UW163_RS01265 at 255.084 kb on + strand at 255.135 kb on + strand, within UW163_RS01265 at 255.136 kb on - strand, within UW163_RS01265 at 255.136 kb on - strand, within UW163_RS01265 at 255.553 kb on - strand at 255.555 kb on + strand at 255.555 kb on + strand at 255.555 kb on + strand at 255.555 kb on + strand at 255.556 kb on - strand at 255.556 kb on - strand at 255.556 kb on - strand at 256.210 kb on + strand at 256.210 kb on + strand at 256.231 kb on - strand at 256.276 kb on - strand at 256.276 kb on - strand at 256.588 kb on - strand, within UW163_RS01275
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 253,741 + UW163_RS01260 0.12 -0.7 253,741 + UW163_RS01260 0.12 -0.6 253,742 - UW163_RS01260 0.12 -1.5 253,742 - UW163_RS01260 0.12 -1.7 253,742 - UW163_RS01260 0.12 -2.2 253,744 + UW163_RS01260 0.12 -1.0 253,745 - UW163_RS01260 0.12 -3.0 253,745 - UW163_RS01260 0.12 +1.0 253,745 - UW163_RS01260 0.12 +0.8 253,874 - UW163_RS01260 0.24 -0.1 254,014 + UW163_RS01260 0.36 +0.0 254,014 + UW163_RS01260 0.36 -0.1 254,014 + UW163_RS01260 0.36 -2.1 254,014 + UW163_RS01260 0.36 -1.1 254,014 + UW163_RS01260 0.36 +1.3 254,015 - UW163_RS01260 0.36 +0.1 254,015 - UW163_RS01260 0.36 -0.1 254,015 - UW163_RS01260 0.36 -0.5 254,015 - UW163_RS01260 0.36 -0.9 254,015 - UW163_RS01260 0.36 -0.1 254,107 + UW163_RS01260 0.45 -0.4 254,108 - UW163_RS01260 0.45 -0.2 254,108 - UW163_RS01260 0.45 -1.5 254,383 + UW163_RS01260 0.70 +0.2 254,384 - UW163_RS01260 0.70 -1.7 254,596 + UW163_RS01260 0.89 +2.1 254,596 + UW163_RS01260 0.89 -0.7 254,597 - UW163_RS01260 0.89 +0.3 254,713 + -0.0 254,713 + +0.2 254,713 + +0.0 254,713 + +0.3 254,714 - +0.1 254,714 - +1.1 254,714 - -0.5 254,714 - +0.1 254,716 + -0.1 254,716 + +0.1 254,868 + UW163_RS01265 0.16 -0.4 254,868 + UW163_RS01265 0.16 -2.7 254,869 - UW163_RS01265 0.16 -0.3 254,916 + UW163_RS01265 0.21 -0.1 254,917 - UW163_RS01265 0.21 -1.6 255,084 + UW163_RS01265 0.40 -0.6 255,084 + UW163_RS01265 0.40 +0.5 255,084 + +1.1 255,135 + UW163_RS01265 0.46 -0.0 255,136 - UW163_RS01265 0.46 -1.6 255,136 - UW163_RS01265 0.46 +0.1 255,553 - -0.0 255,555 + -1.0 255,555 + +0.5 255,555 + -0.8 255,555 + -0.2 255,556 - -1.1 255,556 - -0.0 255,556 - -0.0 256,210 + +0.1 256,210 + +0.4 256,231 - +0.1 256,276 - -1.1 256,276 - -0.0 256,588 - UW163_RS01275 0.37 +0.6
Or see this region's nucleotide sequence