Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0703

Experiment: m.b. Chloramphenicol 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0702 and Echvi_0703 overlap by 23 nucleotidesEchvi_0703 and Echvi_0704 are separated by 128 nucleotidesEchvi_0704 and Echvi_0705 are separated by 122 nucleotides Echvi_0702: Echvi_0702 - hypothetical protein, at 794,894 to 796,072 _0702 Echvi_0703: Echvi_0703 - hypothetical protein, at 796,050 to 796,541 _0703 Echvi_0704: Echvi_0704 - hypothetical protein, at 796,670 to 797,131 _0704 Echvi_0705: Echvi_0705 - hypothetical protein, at 797,254 to 797,748 _0705 Position (kb) 796 797Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 795.067 kb on + strand, within Echvi_0702at 795.068 kb on - strand, within Echvi_0702at 795.068 kb on - strand, within Echvi_0702at 795.144 kb on - strand, within Echvi_0702at 795.156 kb on - strand, within Echvi_0702at 795.156 kb on - strand, within Echvi_0702at 795.174 kb on - strand, within Echvi_0702at 795.200 kb on + strand, within Echvi_0702at 795.201 kb on - strand, within Echvi_0702at 795.201 kb on - strand, within Echvi_0702at 795.201 kb on - strand, within Echvi_0702at 795.203 kb on + strand, within Echvi_0702at 795.203 kb on + strand, within Echvi_0702at 795.204 kb on - strand, within Echvi_0702at 795.221 kb on + strand, within Echvi_0702at 795.221 kb on + strand, within Echvi_0702at 795.222 kb on - strand, within Echvi_0702at 795.222 kb on - strand, within Echvi_0702at 795.222 kb on - strand, within Echvi_0702at 795.287 kb on + strand, within Echvi_0702at 795.287 kb on + strand, within Echvi_0702at 795.287 kb on + strand, within Echvi_0702at 795.287 kb on + strand, within Echvi_0702at 795.287 kb on + strand, within Echvi_0702at 795.288 kb on - strand, within Echvi_0702at 795.288 kb on - strand, within Echvi_0702at 795.288 kb on - strand, within Echvi_0702at 795.288 kb on - strand, within Echvi_0702at 795.288 kb on - strand, within Echvi_0702at 795.288 kb on - strand, within Echvi_0702at 795.291 kb on + strand, within Echvi_0702at 795.291 kb on + strand, within Echvi_0702at 795.291 kb on + strand, within Echvi_0702at 795.291 kb on + strand, within Echvi_0702at 795.292 kb on - strand, within Echvi_0702at 795.292 kb on - strand, within Echvi_0702at 795.344 kb on + strand, within Echvi_0702at 795.345 kb on - strand, within Echvi_0702at 795.345 kb on - strand, within Echvi_0702at 795.392 kb on + strand, within Echvi_0702at 795.393 kb on - strand, within Echvi_0702at 795.395 kb on - strand, within Echvi_0702at 795.421 kb on + strand, within Echvi_0702at 795.421 kb on + strand, within Echvi_0702at 795.421 kb on + strand, within Echvi_0702at 795.422 kb on - strand, within Echvi_0702at 795.422 kb on - strand, within Echvi_0702at 795.447 kb on + strand, within Echvi_0702at 795.447 kb on + strand, within Echvi_0702at 795.447 kb on + strand, within Echvi_0702at 795.447 kb on + strand, within Echvi_0702at 795.447 kb on + strand, within Echvi_0702at 795.447 kb on + strand, within Echvi_0702at 795.448 kb on - strand, within Echvi_0702at 795.449 kb on + strand, within Echvi_0702at 795.449 kb on + strand, within Echvi_0702at 795.450 kb on - strand, within Echvi_0702at 795.455 kb on - strand, within Echvi_0702at 795.455 kb on - strand, within Echvi_0702at 795.534 kb on + strand, within Echvi_0702at 795.545 kb on - strand, within Echvi_0702at 795.566 kb on + strand, within Echvi_0702at 795.566 kb on + strand, within Echvi_0702at 795.574 kb on + strand, within Echvi_0702at 795.589 kb on + strand, within Echvi_0702at 795.589 kb on + strand, within Echvi_0702at 795.593 kb on + strand, within Echvi_0702at 795.594 kb on - strand, within Echvi_0702at 795.596 kb on - strand, within Echvi_0702at 795.600 kb on + strand, within Echvi_0702at 795.600 kb on + strand, within Echvi_0702at 795.600 kb on + strand, within Echvi_0702at 795.604 kb on + strand, within Echvi_0702at 795.605 kb on - strand, within Echvi_0702at 795.605 kb on - strand, within Echvi_0702at 795.616 kb on + strand, within Echvi_0702at 795.676 kb on - strand, within Echvi_0702at 795.690 kb on + strand, within Echvi_0702at 795.691 kb on - strand, within Echvi_0702at 795.735 kb on + strand, within Echvi_0702at 795.743 kb on - strand, within Echvi_0702at 795.743 kb on - strand, within Echvi_0702at 795.770 kb on - strand, within Echvi_0702at 795.781 kb on + strand, within Echvi_0702at 795.801 kb on + strand, within Echvi_0702at 795.803 kb on + strand, within Echvi_0702at 795.809 kb on + strand, within Echvi_0702at 795.810 kb on - strand, within Echvi_0702at 795.813 kb on - strand, within Echvi_0702at 795.816 kb on + strand, within Echvi_0702at 795.827 kb on - strand, within Echvi_0702at 795.844 kb on + strand, within Echvi_0702at 795.845 kb on - strand, within Echvi_0702at 795.847 kb on + strand, within Echvi_0702at 795.847 kb on + strand, within Echvi_0702at 795.847 kb on + strand, within Echvi_0702at 795.847 kb on + strand, within Echvi_0702at 795.848 kb on - strand, within Echvi_0702at 795.848 kb on - strand, within Echvi_0702at 795.904 kb on + strand, within Echvi_0702at 795.905 kb on - strand, within Echvi_0702at 795.924 kb on + strand, within Echvi_0702at 795.926 kb on + strand, within Echvi_0702at 795.926 kb on + strand, within Echvi_0702at 795.926 kb on + strand, within Echvi_0702at 795.958 kb on - strandat 796.001 kb on - strandat 796.015 kb on + strandat 796.016 kb on - strandat 796.024 kb on - strandat 796.024 kb on - strandat 796.024 kb on - strandat 796.071 kb on - strandat 796.074 kb on - strandat 796.094 kb on - strandat 796.120 kb on + strand, within Echvi_0703at 796.167 kb on + strand, within Echvi_0703at 796.168 kb on - strand, within Echvi_0703at 796.174 kb on + strand, within Echvi_0703at 796.175 kb on - strand, within Echvi_0703at 796.175 kb on - strand, within Echvi_0703at 796.175 kb on - strand, within Echvi_0703at 796.178 kb on + strand, within Echvi_0703at 796.178 kb on + strand, within Echvi_0703at 796.179 kb on - strand, within Echvi_0703at 796.212 kb on + strand, within Echvi_0703at 796.213 kb on - strand, within Echvi_0703at 796.222 kb on + strand, within Echvi_0703at 796.222 kb on + strand, within Echvi_0703at 796.222 kb on + strand, within Echvi_0703at 796.232 kb on + strand, within Echvi_0703at 796.232 kb on + strand, within Echvi_0703at 796.257 kb on - strand, within Echvi_0703at 796.274 kb on + strand, within Echvi_0703at 796.275 kb on - strand, within Echvi_0703at 796.337 kb on - strand, within Echvi_0703at 796.337 kb on - strand, within Echvi_0703at 796.345 kb on - strand, within Echvi_0703at 796.401 kb on + strand, within Echvi_0703at 796.401 kb on + strand, within Echvi_0703at 796.401 kb on + strand, within Echvi_0703at 796.402 kb on - strand, within Echvi_0703at 796.433 kb on + strand, within Echvi_0703at 796.434 kb on - strand, within Echvi_0703at 796.434 kb on - strand, within Echvi_0703at 796.463 kb on + strand, within Echvi_0703at 796.464 kb on - strand, within Echvi_0703at 796.486 kb on + strand, within Echvi_0703at 796.487 kb on - strand, within Echvi_0703at 796.512 kb on - strandat 796.539 kb on + strandat 796.540 kb on - strandat 796.540 kb on - strandat 796.557 kb on - strandat 796.558 kb on + strandat 796.570 kb on + strandat 796.570 kb on + strandat 796.571 kb on - strandat 796.571 kb on - strandat 796.571 kb on - strandat 796.636 kb on + strandat 796.637 kb on - strandat 796.648 kb on + strandat 796.648 kb on + strandat 796.648 kb on + strandat 796.649 kb on - strandat 796.649 kb on - strandat 796.649 kb on - strandat 796.661 kb on + strandat 796.681 kb on + strandat 796.712 kb on - strandat 796.784 kb on - strand, within Echvi_0704at 796.784 kb on - strand, within Echvi_0704at 796.787 kb on + strand, within Echvi_0704at 796.787 kb on + strand, within Echvi_0704at 796.787 kb on + strand, within Echvi_0704at 796.788 kb on - strand, within Echvi_0704at 796.792 kb on - strand, within Echvi_0704at 796.797 kb on + strand, within Echvi_0704at 796.797 kb on + strand, within Echvi_0704at 796.798 kb on - strand, within Echvi_0704at 796.798 kb on - strand, within Echvi_0704at 796.826 kb on + strand, within Echvi_0704at 796.864 kb on + strand, within Echvi_0704at 796.864 kb on + strand, within Echvi_0704at 796.864 kb on + strand, within Echvi_0704at 796.864 kb on + strand, within Echvi_0704at 796.927 kb on + strand, within Echvi_0704at 796.927 kb on + strand, within Echvi_0704at 796.927 kb on + strand, within Echvi_0704at 796.927 kb on + strand, within Echvi_0704at 796.931 kb on - strand, within Echvi_0704at 796.931 kb on - strand, within Echvi_0704at 796.936 kb on + strand, within Echvi_0704at 796.979 kb on - strand, within Echvi_0704at 797.003 kb on - strand, within Echvi_0704at 797.003 kb on - strand, within Echvi_0704at 797.003 kb on - strand, within Echvi_0704at 797.091 kb on - strandat 797.094 kb on + strandat 797.107 kb on + strandat 797.110 kb on + strandat 797.110 kb on + strandat 797.111 kb on - strandat 797.111 kb on - strandat 797.120 kb on - strandat 797.188 kb on - strandat 797.196 kb on + strandat 797.196 kb on + strandat 797.205 kb on + strandat 797.206 kb on - strandat 797.217 kb on + strandat 797.228 kb on + strandat 797.228 kb on + strandat 797.230 kb on + strandat 797.237 kb on + strandat 797.238 kb on - strandat 797.238 kb on - strandat 797.238 kb on - strandat 797.238 kb on - strandat 797.238 kb on - strandat 797.238 kb on - strandat 797.277 kb on + strandat 797.314 kb on + strand, within Echvi_0705at 797.315 kb on - strand, within Echvi_0705at 797.344 kb on + strand, within Echvi_0705at 797.344 kb on + strand, within Echvi_0705at 797.345 kb on - strand, within Echvi_0705at 797.347 kb on - strand, within Echvi_0705at 797.347 kb on - strand, within Echvi_0705at 797.347 kb on - strand, within Echvi_0705at 797.352 kb on + strand, within Echvi_0705at 797.353 kb on - strand, within Echvi_0705at 797.362 kb on - strand, within Echvi_0705at 797.377 kb on - strand, within Echvi_0705at 797.393 kb on + strand, within Echvi_0705at 797.393 kb on + strand, within Echvi_0705at 797.409 kb on - strand, within Echvi_0705at 797.435 kb on + strand, within Echvi_0705at 797.435 kb on + strand, within Echvi_0705at 797.436 kb on - strand, within Echvi_0705at 797.436 kb on - strand, within Echvi_0705at 797.441 kb on - strand, within Echvi_0705at 797.461 kb on - strand, within Echvi_0705

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.005 mg/ml
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795,067 + Echvi_0702 0.15 -0.8
795,068 - Echvi_0702 0.15 -0.3
795,068 - Echvi_0702 0.15 -0.0
795,144 - Echvi_0702 0.21 -0.2
795,156 - Echvi_0702 0.22 +0.4
795,156 - Echvi_0702 0.22 +0.4
795,174 - Echvi_0702 0.24 +0.4
795,200 + Echvi_0702 0.26 -0.2
795,201 - Echvi_0702 0.26 -2.9
795,201 - Echvi_0702 0.26 +0.5
795,201 - Echvi_0702 0.26 +0.5
795,203 + Echvi_0702 0.26 +0.2
795,203 + Echvi_0702 0.26 +0.9
795,204 - Echvi_0702 0.26 +0.3
795,221 + Echvi_0702 0.28 +1.4
795,221 + Echvi_0702 0.28 -1.1
795,222 - Echvi_0702 0.28 -1.8
795,222 - Echvi_0702 0.28 -1.0
795,222 - Echvi_0702 0.28 +1.0
795,287 + Echvi_0702 0.33 -0.1
795,287 + Echvi_0702 0.33 -2.3
795,287 + Echvi_0702 0.33 +0.4
795,287 + Echvi_0702 0.33 -0.1
795,287 + Echvi_0702 0.33 -1.3
795,288 - Echvi_0702 0.33 +0.8
795,288 - Echvi_0702 0.33 -0.3
795,288 - Echvi_0702 0.33 +0.1
795,288 - Echvi_0702 0.33 +0.0
795,288 - Echvi_0702 0.33 +1.0
795,288 - Echvi_0702 0.33 +1.4
795,291 + Echvi_0702 0.34 -0.4
795,291 + Echvi_0702 0.34 +0.8
795,291 + Echvi_0702 0.34 +1.5
795,291 + Echvi_0702 0.34 +0.3
795,292 - Echvi_0702 0.34 -0.0
795,292 - Echvi_0702 0.34 -1.9
795,344 + Echvi_0702 0.38 +0.4
795,345 - Echvi_0702 0.38 -1.2
795,345 - Echvi_0702 0.38 +0.9
795,392 + Echvi_0702 0.42 +0.5
795,393 - Echvi_0702 0.42 -0.5
795,395 - Echvi_0702 0.42 -2.5
795,421 + Echvi_0702 0.45 -0.2
795,421 + Echvi_0702 0.45 +0.4
795,421 + Echvi_0702 0.45 -0.1
795,422 - Echvi_0702 0.45 -0.1
795,422 - Echvi_0702 0.45 +1.1
795,447 + Echvi_0702 0.47 +1.0
795,447 + Echvi_0702 0.47 +0.1
795,447 + Echvi_0702 0.47 +0.2
795,447 + Echvi_0702 0.47 +0.6
795,447 + Echvi_0702 0.47 -1.0
795,447 + Echvi_0702 0.47 +2.3
795,448 - Echvi_0702 0.47 +1.7
795,449 + Echvi_0702 0.47 +0.4
795,449 + Echvi_0702 0.47 -0.3
795,450 - Echvi_0702 0.47 +2.7
795,455 - Echvi_0702 0.48 +0.2
795,455 - Echvi_0702 0.48 -0.7
795,534 + Echvi_0702 0.54 -0.3
795,545 - Echvi_0702 0.55 -0.2
795,566 + Echvi_0702 0.57 -0.5
795,566 + Echvi_0702 0.57 +0.2
795,574 + Echvi_0702 0.58 +0.2
795,589 + Echvi_0702 0.59 -0.0
795,589 + Echvi_0702 0.59 -0.3
795,593 + Echvi_0702 0.59 -0.6
795,594 - Echvi_0702 0.59 -1.2
795,596 - Echvi_0702 0.60 +0.5
795,600 + Echvi_0702 0.60 -0.3
795,600 + Echvi_0702 0.60 +1.6
795,600 + Echvi_0702 0.60 -0.2
795,604 + Echvi_0702 0.60 +0.4
795,605 - Echvi_0702 0.60 +1.5
795,605 - Echvi_0702 0.60 +0.1
795,616 + Echvi_0702 0.61 -0.0
795,676 - Echvi_0702 0.66 +0.8
795,690 + Echvi_0702 0.68 -0.3
795,691 - Echvi_0702 0.68 +0.3
795,735 + Echvi_0702 0.71 -1.9
795,743 - Echvi_0702 0.72 +0.6
795,743 - Echvi_0702 0.72 -0.7
795,770 - Echvi_0702 0.74 +0.1
795,781 + Echvi_0702 0.75 +0.2
795,801 + Echvi_0702 0.77 -0.2
795,803 + Echvi_0702 0.77 +1.3
795,809 + Echvi_0702 0.78 +0.9
795,810 - Echvi_0702 0.78 +0.6
795,813 - Echvi_0702 0.78 +0.2
795,816 + Echvi_0702 0.78 -0.0
795,827 - Echvi_0702 0.79 -0.1
795,844 + Echvi_0702 0.81 -0.7
795,845 - Echvi_0702 0.81 -0.2
795,847 + Echvi_0702 0.81 -1.0
795,847 + Echvi_0702 0.81 -0.3
795,847 + Echvi_0702 0.81 +0.3
795,847 + Echvi_0702 0.81 +0.5
795,848 - Echvi_0702 0.81 -0.2
795,848 - Echvi_0702 0.81 -0.8
795,904 + Echvi_0702 0.86 +0.0
795,905 - Echvi_0702 0.86 +1.0
795,924 + Echvi_0702 0.87 -0.5
795,926 + Echvi_0702 0.88 -0.2
795,926 + Echvi_0702 0.88 -0.6
795,926 + Echvi_0702 0.88 -0.7
795,958 - -0.2
796,001 - +0.6
796,015 + +0.4
796,016 - -0.1
796,024 - -0.5
796,024 - +1.0
796,024 - -1.2
796,071 - +0.7
796,074 - +1.4
796,094 - +0.1
796,120 + Echvi_0703 0.14 +0.2
796,167 + Echvi_0703 0.24 +0.9
796,168 - Echvi_0703 0.24 +0.2
796,174 + Echvi_0703 0.25 +2.7
796,175 - Echvi_0703 0.25 -0.6
796,175 - Echvi_0703 0.25 +0.2
796,175 - Echvi_0703 0.25 +0.4
796,178 + Echvi_0703 0.26 +0.8
796,178 + Echvi_0703 0.26 +0.5
796,179 - Echvi_0703 0.26 -0.7
796,212 + Echvi_0703 0.33 -1.7
796,213 - Echvi_0703 0.33 -0.5
796,222 + Echvi_0703 0.35 -0.5
796,222 + Echvi_0703 0.35 -1.6
796,222 + Echvi_0703 0.35 -0.6
796,232 + Echvi_0703 0.37 -0.4
796,232 + Echvi_0703 0.37 +0.2
796,257 - Echvi_0703 0.42 +0.4
796,274 + Echvi_0703 0.46 -0.0
796,275 - Echvi_0703 0.46 +0.2
796,337 - Echvi_0703 0.58 +0.6
796,337 - Echvi_0703 0.58 -0.1
796,345 - Echvi_0703 0.60 +2.6
796,401 + Echvi_0703 0.71 +0.1
796,401 + Echvi_0703 0.71 +0.3
796,401 + Echvi_0703 0.71 +0.4
796,402 - Echvi_0703 0.72 +0.0
796,433 + Echvi_0703 0.78 -0.1
796,434 - Echvi_0703 0.78 +0.7
796,434 - Echvi_0703 0.78 +0.9
796,463 + Echvi_0703 0.84 -0.2
796,464 - Echvi_0703 0.84 +0.4
796,486 + Echvi_0703 0.89 -0.7
796,487 - Echvi_0703 0.89 +1.2
796,512 - -1.0
796,539 + +0.7
796,540 - +0.2
796,540 - +0.4
796,557 - -2.1
796,558 + +0.8
796,570 + +0.4
796,570 + +0.4
796,571 - +1.6
796,571 - +2.0
796,571 - +0.0
796,636 + +1.4
796,637 - -0.1
796,648 + +1.6
796,648 + -0.2
796,648 + -1.8
796,649 - -0.0
796,649 - +0.0
796,649 - -1.2
796,661 + -0.0
796,681 + +1.1
796,712 - +0.5
796,784 - Echvi_0704 0.25 -0.2
796,784 - Echvi_0704 0.25 -0.4
796,787 + Echvi_0704 0.25 +0.1
796,787 + Echvi_0704 0.25 +3.0
796,787 + Echvi_0704 0.25 -0.9
796,788 - Echvi_0704 0.26 +0.4
796,792 - Echvi_0704 0.26 +0.8
796,797 + Echvi_0704 0.27 +0.5
796,797 + Echvi_0704 0.27 +1.5
796,798 - Echvi_0704 0.28 +0.4
796,798 - Echvi_0704 0.28 +0.0
796,826 + Echvi_0704 0.34 +0.0
796,864 + Echvi_0704 0.42 +1.0
796,864 + Echvi_0704 0.42 -0.5
796,864 + Echvi_0704 0.42 +0.0
796,864 + Echvi_0704 0.42 -0.0
796,927 + Echvi_0704 0.56 +0.4
796,927 + Echvi_0704 0.56 -0.9
796,927 + Echvi_0704 0.56 -2.1
796,927 + Echvi_0704 0.56 +0.1
796,931 - Echvi_0704 0.56 +0.1
796,931 - Echvi_0704 0.56 +0.9
796,936 + Echvi_0704 0.58 +0.1
796,979 - Echvi_0704 0.67 +1.2
797,003 - Echvi_0704 0.72 -0.7
797,003 - Echvi_0704 0.72 -0.2
797,003 - Echvi_0704 0.72 -0.0
797,091 - -0.5
797,094 + -0.9
797,107 + +2.0
797,110 + -0.2
797,110 + +0.6
797,111 - -1.7
797,111 - +0.3
797,120 - +0.0
797,188 - +0.1
797,196 + -1.0
797,196 + -0.5
797,205 + +0.0
797,206 - +0.5
797,217 + -0.6
797,228 + +0.9
797,228 + -0.4
797,230 + -0.9
797,237 + +0.9
797,238 - +0.4
797,238 - -0.1
797,238 - -0.1
797,238 - -0.9
797,238 - +0.6
797,238 - +1.1
797,277 + +1.0
797,314 + Echvi_0705 0.12 +0.9
797,315 - Echvi_0705 0.12 -1.0
797,344 + Echvi_0705 0.18 +1.0
797,344 + Echvi_0705 0.18 -0.5
797,345 - Echvi_0705 0.18 +0.7
797,347 - Echvi_0705 0.19 -1.0
797,347 - Echvi_0705 0.19 -0.2
797,347 - Echvi_0705 0.19 +0.5
797,352 + Echvi_0705 0.20 -1.3
797,353 - Echvi_0705 0.20 +1.1
797,362 - Echvi_0705 0.22 -1.0
797,377 - Echvi_0705 0.25 -0.0
797,393 + Echvi_0705 0.28 -0.7
797,393 + Echvi_0705 0.28 -0.3
797,409 - Echvi_0705 0.31 +0.4
797,435 + Echvi_0705 0.37 +0.7
797,435 + Echvi_0705 0.37 -0.3
797,436 - Echvi_0705 0.37 -0.3
797,436 - Echvi_0705 0.37 -0.0
797,441 - Echvi_0705 0.38 +0.3
797,461 - Echvi_0705 0.42 +0.9

Or see this region's nucleotide sequence