Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0513

Experiment: m.b. Chloramphenicol 0.005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0512 and Echvi_0513 are separated by 80 nucleotidesEchvi_0513 and Echvi_0514 are separated by 55 nucleotidesEchvi_0514 and Echvi_0515 are separated by 79 nucleotides Echvi_0512: Echvi_0512 - hypothetical protein, at 573,059 to 573,868 _0512 Echvi_0513: Echvi_0513 - Small-conductance mechanosensitive channel, at 573,949 to 574,845 _0513 Echvi_0514: Echvi_0514 - Uncharacterized membrane protein, at 574,901 to 575,617 _0514 Echvi_0515: Echvi_0515 - Ribulokinase (EC 2.7.1.16) (from data), at 575,697 to 577,385 _0515 Position (kb) 573 574 575Strain fitness (log2 ratio) -2 -1 0 1 2at 573.047 kb on - strandat 573.047 kb on - strandat 573.047 kb on - strandat 573.047 kb on - strandat 573.067 kb on + strandat 573.109 kb on - strandat 573.160 kb on + strand, within Echvi_0512at 573.160 kb on + strand, within Echvi_0512at 573.161 kb on - strand, within Echvi_0512at 573.161 kb on - strand, within Echvi_0512at 573.161 kb on - strand, within Echvi_0512at 573.161 kb on - strand, within Echvi_0512at 573.166 kb on + strand, within Echvi_0512at 573.167 kb on - strand, within Echvi_0512at 573.186 kb on + strand, within Echvi_0512at 573.222 kb on - strand, within Echvi_0512at 573.247 kb on + strand, within Echvi_0512at 573.311 kb on + strandat 573.311 kb on + strand, within Echvi_0512at 573.461 kb on + strand, within Echvi_0512at 573.464 kb on + strand, within Echvi_0512at 573.471 kb on + strand, within Echvi_0512at 573.493 kb on + strand, within Echvi_0512at 573.494 kb on - strand, within Echvi_0512at 573.505 kb on + strand, within Echvi_0512at 573.563 kb on + strand, within Echvi_0512at 573.642 kb on - strand, within Echvi_0512at 573.880 kb on - strandat 573.890 kb on + strandat 574.026 kb on + strandat 574.030 kb on - strandat 574.060 kb on + strand, within Echvi_0513at 574.061 kb on - strand, within Echvi_0513at 574.062 kb on + strand, within Echvi_0513at 574.062 kb on + strand, within Echvi_0513at 574.063 kb on - strand, within Echvi_0513at 574.063 kb on - strand, within Echvi_0513at 574.067 kb on + strand, within Echvi_0513at 574.067 kb on + strand, within Echvi_0513at 574.183 kb on - strand, within Echvi_0513at 574.187 kb on - strand, within Echvi_0513at 574.242 kb on - strand, within Echvi_0513at 574.296 kb on + strand, within Echvi_0513at 574.333 kb on - strand, within Echvi_0513at 574.333 kb on - strand, within Echvi_0513at 574.350 kb on - strand, within Echvi_0513at 574.355 kb on + strand, within Echvi_0513at 574.355 kb on + strand, within Echvi_0513at 574.355 kb on + strand, within Echvi_0513at 574.432 kb on + strand, within Echvi_0513at 574.432 kb on + strand, within Echvi_0513at 574.432 kb on + strand, within Echvi_0513at 574.432 kb on + strand, within Echvi_0513at 574.433 kb on - strand, within Echvi_0513at 574.433 kb on - strand, within Echvi_0513at 574.433 kb on - strand, within Echvi_0513at 574.469 kb on + strand, within Echvi_0513at 574.470 kb on - strand, within Echvi_0513at 574.470 kb on - strand, within Echvi_0513at 574.470 kb on - strand, within Echvi_0513at 574.511 kb on + strand, within Echvi_0513at 574.523 kb on - strand, within Echvi_0513at 574.612 kb on + strand, within Echvi_0513at 574.613 kb on - strand, within Echvi_0513at 574.613 kb on - strand, within Echvi_0513at 574.646 kb on + strand, within Echvi_0513at 574.658 kb on + strand, within Echvi_0513at 574.658 kb on + strand, within Echvi_0513at 574.658 kb on + strand, within Echvi_0513at 574.679 kb on - strand, within Echvi_0513at 574.679 kb on - strand, within Echvi_0513at 574.774 kb on - strandat 574.775 kb on + strandat 574.775 kb on + strandat 574.775 kb on + strandat 574.776 kb on - strandat 574.792 kb on + strandat 574.915 kb on + strandat 574.947 kb on - strandat 575.045 kb on - strand, within Echvi_0514at 575.094 kb on + strand, within Echvi_0514at 575.102 kb on + strand, within Echvi_0514at 575.102 kb on + strand, within Echvi_0514at 575.103 kb on - strand, within Echvi_0514at 575.106 kb on + strand, within Echvi_0514at 575.107 kb on - strand, within Echvi_0514at 575.107 kb on - strand, within Echvi_0514at 575.107 kb on - strand, within Echvi_0514at 575.132 kb on + strand, within Echvi_0514at 575.133 kb on - strand, within Echvi_0514at 575.136 kb on - strand, within Echvi_0514at 575.136 kb on - strand, within Echvi_0514at 575.238 kb on + strand, within Echvi_0514at 575.238 kb on + strand, within Echvi_0514at 575.239 kb on - strand, within Echvi_0514at 575.361 kb on - strand, within Echvi_0514at 575.361 kb on - strand, within Echvi_0514at 575.374 kb on - strand, within Echvi_0514at 575.402 kb on + strand, within Echvi_0514at 575.402 kb on + strand, within Echvi_0514at 575.437 kb on + strand, within Echvi_0514at 575.455 kb on + strand, within Echvi_0514at 575.477 kb on - strand, within Echvi_0514at 575.493 kb on + strand, within Echvi_0514at 575.521 kb on - strand, within Echvi_0514at 575.580 kb on - strandat 575.580 kb on - strandat 575.593 kb on - strandat 575.616 kb on - strandat 575.755 kb on + strandat 575.756 kb on - strandat 575.765 kb on - strandat 575.766 kb on + strandat 575.766 kb on + strandat 575.766 kb on + strandat 575.767 kb on - strandat 575.767 kb on - strandat 575.775 kb on - strandat 575.775 kb on - strandat 575.776 kb on + strandat 575.776 kb on + strandat 575.777 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.005 mg/ml
remove
573,047 - -1.5
573,047 - +0.3
573,047 - -0.8
573,047 - -0.4
573,067 + +0.0
573,109 - -0.1
573,160 + Echvi_0512 0.12 +0.2
573,160 + Echvi_0512 0.12 -0.5
573,161 - Echvi_0512 0.13 +0.2
573,161 - Echvi_0512 0.13 -1.2
573,161 - Echvi_0512 0.13 -1.0
573,161 - Echvi_0512 0.13 +0.0
573,166 + Echvi_0512 0.13 +0.9
573,167 - Echvi_0512 0.13 +0.0
573,186 + Echvi_0512 0.16 -0.7
573,222 - Echvi_0512 0.20 +0.1
573,247 + Echvi_0512 0.23 -0.8
573,311 + +0.3
573,311 + Echvi_0512 0.31 +0.5
573,461 + Echvi_0512 0.50 +0.4
573,464 + Echvi_0512 0.50 +0.6
573,471 + Echvi_0512 0.51 +0.3
573,493 + Echvi_0512 0.54 -0.4
573,494 - Echvi_0512 0.54 +0.6
573,505 + Echvi_0512 0.55 +0.0
573,563 + Echvi_0512 0.62 -1.3
573,642 - Echvi_0512 0.72 -1.0
573,880 - -0.1
573,890 + -0.2
574,026 + -0.5
574,030 - +0.0
574,060 + Echvi_0513 0.12 +0.0
574,061 - Echvi_0513 0.12 -1.8
574,062 + Echvi_0513 0.13 -0.5
574,062 + Echvi_0513 0.13 +0.2
574,063 - Echvi_0513 0.13 -1.3
574,063 - Echvi_0513 0.13 -0.1
574,067 + Echvi_0513 0.13 +0.8
574,067 + Echvi_0513 0.13 -1.2
574,183 - Echvi_0513 0.26 +0.1
574,187 - Echvi_0513 0.27 -1.7
574,242 - Echvi_0513 0.33 +0.3
574,296 + Echvi_0513 0.39 -0.4
574,333 - Echvi_0513 0.43 -0.8
574,333 - Echvi_0513 0.43 -0.5
574,350 - Echvi_0513 0.45 +0.3
574,355 + Echvi_0513 0.45 +0.5
574,355 + Echvi_0513 0.45 +1.3
574,355 + Echvi_0513 0.45 -1.8
574,432 + Echvi_0513 0.54 +0.7
574,432 + Echvi_0513 0.54 +0.8
574,432 + Echvi_0513 0.54 -0.2
574,432 + Echvi_0513 0.54 -1.0
574,433 - Echvi_0513 0.54 +2.7
574,433 - Echvi_0513 0.54 +0.2
574,433 - Echvi_0513 0.54 -0.5
574,469 + Echvi_0513 0.58 +1.6
574,470 - Echvi_0513 0.58 -0.4
574,470 - Echvi_0513 0.58 +0.9
574,470 - Echvi_0513 0.58 +0.4
574,511 + Echvi_0513 0.63 -0.8
574,523 - Echvi_0513 0.64 -1.4
574,612 + Echvi_0513 0.74 +1.1
574,613 - Echvi_0513 0.74 -0.0
574,613 - Echvi_0513 0.74 -1.8
574,646 + Echvi_0513 0.78 -1.0
574,658 + Echvi_0513 0.79 -0.3
574,658 + Echvi_0513 0.79 -0.5
574,658 + Echvi_0513 0.79 -0.5
574,679 - Echvi_0513 0.81 -0.9
574,679 - Echvi_0513 0.81 -1.6
574,774 - -0.0
574,775 + -0.6
574,775 + -0.7
574,775 + +0.2
574,776 - -0.4
574,792 + -1.9
574,915 + +0.2
574,947 - -0.1
575,045 - Echvi_0514 0.20 -1.1
575,094 + Echvi_0514 0.27 -1.0
575,102 + Echvi_0514 0.28 -0.8
575,102 + Echvi_0514 0.28 +0.6
575,103 - Echvi_0514 0.28 -0.7
575,106 + Echvi_0514 0.29 +0.9
575,107 - Echvi_0514 0.29 +1.6
575,107 - Echvi_0514 0.29 +0.0
575,107 - Echvi_0514 0.29 -1.9
575,132 + Echvi_0514 0.32 +1.8
575,133 - Echvi_0514 0.32 +0.1
575,136 - Echvi_0514 0.33 +0.7
575,136 - Echvi_0514 0.33 -0.5
575,238 + Echvi_0514 0.47 +1.4
575,238 + Echvi_0514 0.47 -0.0
575,239 - Echvi_0514 0.47 +0.6
575,361 - Echvi_0514 0.64 +0.8
575,361 - Echvi_0514 0.64 -2.2
575,374 - Echvi_0514 0.66 -0.7
575,402 + Echvi_0514 0.70 +0.7
575,402 + Echvi_0514 0.70 +0.3
575,437 + Echvi_0514 0.75 +0.6
575,455 + Echvi_0514 0.77 +1.9
575,477 - Echvi_0514 0.80 +1.0
575,493 + Echvi_0514 0.83 -0.4
575,521 - Echvi_0514 0.86 +0.2
575,580 - -0.5
575,580 - +0.7
575,593 - +0.7
575,616 - +0.0
575,755 + -0.8
575,756 - +1.5
575,765 - -0.1
575,766 + +0.3
575,766 + -0.4
575,766 + -0.7
575,767 - -0.5
575,767 - -0.1
575,775 - -1.2
575,775 - -0.5
575,776 + -0.5
575,776 + -0.3
575,777 - -1.3

Or see this region's nucleotide sequence