Experiment: m.b. Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0447 and Echvi_0448 are separated by 14 nucleotides Echvi_0448 and Echvi_0449 are separated by 106 nucleotides Echvi_0449 and Echvi_0450 are separated by 80 nucleotides Echvi_0450 and Echvi_0451 are separated by 120 nucleotides
Echvi_0447: Echvi_0447 - hypothetical protein, at 490,376 to 491,695
_0447
Echvi_0448: Echvi_0448 - hypothetical protein, at 491,710 to 492,255
_0448
Echvi_0449: Echvi_0449 - hypothetical protein, at 492,362 to 493,480
_0449
Echvi_0450: Echvi_0450 - hypothetical protein, at 493,561 to 494,091
_0450
Echvi_0451: Echvi_0451 - hypothetical protein, at 494,212 to 495,504
_0451
Position (kb) 492
493
494 Strain fitness (log2 ratio) -2
-1
0
1
2 at 491.380 kb on + strand, within Echvi_0447 at 491.380 kb on + strand, within Echvi_0447 at 491.381 kb on - strand, within Echvi_0447 at 491.473 kb on + strand, within Echvi_0447 at 491.473 kb on + strand, within Echvi_0447 at 491.487 kb on + strand, within Echvi_0447 at 491.487 kb on + strand, within Echvi_0447 at 491.488 kb on - strand, within Echvi_0447 at 491.488 kb on - strand, within Echvi_0447 at 491.491 kb on + strand, within Echvi_0447 at 491.543 kb on - strand, within Echvi_0447 at 491.543 kb on - strand, within Echvi_0447 at 491.561 kb on + strand, within Echvi_0447 at 491.582 kb on - strand at 491.669 kb on + strand at 491.670 kb on - strand at 491.670 kb on - strand at 491.675 kb on - strand at 491.675 kb on - strand at 491.675 kb on - strand at 491.707 kb on - strand at 491.711 kb on + strand at 491.711 kb on + strand at 491.722 kb on + strand at 491.746 kb on + strand at 491.866 kb on - strand, within Echvi_0448 at 491.870 kb on - strand, within Echvi_0448 at 491.870 kb on - strand, within Echvi_0448 at 491.888 kb on + strand, within Echvi_0448 at 491.941 kb on + strand, within Echvi_0448 at 491.942 kb on - strand, within Echvi_0448 at 491.942 kb on - strand, within Echvi_0448 at 491.944 kb on - strand, within Echvi_0448 at 492.069 kb on + strand, within Echvi_0448 at 492.071 kb on + strand, within Echvi_0448 at 492.072 kb on - strand, within Echvi_0448 at 492.129 kb on + strand, within Echvi_0448 at 492.129 kb on + strand, within Echvi_0448 at 492.130 kb on - strand, within Echvi_0448 at 492.137 kb on + strand, within Echvi_0448 at 492.137 kb on + strand, within Echvi_0448 at 492.138 kb on - strand, within Echvi_0448 at 492.138 kb on - strand, within Echvi_0448 at 492.303 kb on + strand at 492.322 kb on + strand at 492.334 kb on + strand at 492.343 kb on + strand at 492.358 kb on - strand at 492.358 kb on - strand at 492.395 kb on + strand at 492.396 kb on - strand at 492.603 kb on - strand, within Echvi_0449 at 492.663 kb on + strand, within Echvi_0449 at 492.667 kb on + strand, within Echvi_0449 at 492.667 kb on + strand, within Echvi_0449 at 492.728 kb on + strand, within Echvi_0449 at 492.795 kb on + strand, within Echvi_0449 at 492.796 kb on - strand, within Echvi_0449 at 492.801 kb on + strand, within Echvi_0449 at 492.969 kb on + strand, within Echvi_0449 at 492.970 kb on - strand, within Echvi_0449 at 492.970 kb on - strand, within Echvi_0449 at 492.970 kb on - strand, within Echvi_0449 at 492.970 kb on - strand, within Echvi_0449 at 493.011 kb on + strand, within Echvi_0449 at 493.011 kb on + strand, within Echvi_0449 at 493.088 kb on + strand, within Echvi_0449 at 493.246 kb on + strand, within Echvi_0449 at 493.247 kb on - strand, within Echvi_0449 at 493.276 kb on + strand, within Echvi_0449 at 493.286 kb on - strand, within Echvi_0449 at 493.432 kb on + strand at 493.432 kb on + strand at 493.433 kb on - strand at 493.433 kb on - strand at 493.435 kb on + strand at 493.435 kb on + strand at 493.436 kb on - strand at 493.437 kb on + strand at 493.438 kb on - strand at 493.451 kb on + strand at 493.451 kb on + strand at 493.451 kb on + strand at 493.452 kb on - strand at 493.452 kb on - strand at 493.475 kb on + strand at 493.476 kb on - strand at 493.487 kb on + strand at 493.487 kb on + strand at 493.487 kb on + strand at 493.487 kb on + strand at 493.488 kb on - strand at 493.490 kb on + strand at 493.491 kb on - strand at 493.527 kb on - strand at 493.550 kb on + strand at 493.563 kb on - strand at 493.661 kb on - strand, within Echvi_0450 at 493.702 kb on - strand, within Echvi_0450 at 493.717 kb on + strand, within Echvi_0450 at 493.718 kb on - strand, within Echvi_0450 at 493.825 kb on - strand, within Echvi_0450 at 493.863 kb on + strand, within Echvi_0450 at 493.919 kb on + strand, within Echvi_0450 at 493.920 kb on - strand, within Echvi_0450 at 493.920 kb on - strand, within Echvi_0450 at 493.920 kb on - strand, within Echvi_0450 at 493.963 kb on + strand, within Echvi_0450 at 493.963 kb on + strand, within Echvi_0450 at 493.964 kb on - strand, within Echvi_0450 at 494.074 kb on + strand at 494.116 kb on + strand at 494.126 kb on + strand at 494.128 kb on + strand at 494.177 kb on - strand at 494.210 kb on + strand at 494.213 kb on + strand at 494.220 kb on + strand at 494.220 kb on + strand at 494.238 kb on - strand at 494.243 kb on - strand at 494.271 kb on + strand at 494.273 kb on + strand at 494.273 kb on + strand at 494.273 kb on + strand at 494.273 kb on + strand at 494.292 kb on + strand at 494.348 kb on + strand, within Echvi_0451 at 494.349 kb on - strand, within Echvi_0451 at 494.407 kb on - strand, within Echvi_0451 at 494.408 kb on + strand, within Echvi_0451 at 494.408 kb on + strand, within Echvi_0451 at 494.408 kb on + strand, within Echvi_0451 at 494.408 kb on + strand, within Echvi_0451 at 494.409 kb on - strand, within Echvi_0451 at 494.409 kb on - strand, within Echvi_0451
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.005 mg/ml remove 491,380 + Echvi_0447 0.76 -0.2 491,380 + Echvi_0447 0.76 +1.5 491,381 - Echvi_0447 0.76 +0.4 491,473 + Echvi_0447 0.83 -0.3 491,473 + Echvi_0447 0.83 -0.3 491,487 + Echvi_0447 0.84 +0.2 491,487 + Echvi_0447 0.84 +1.1 491,488 - Echvi_0447 0.84 -0.0 491,488 - Echvi_0447 0.84 -1.6 491,491 + Echvi_0447 0.84 +0.6 491,543 - Echvi_0447 0.88 +0.8 491,543 - Echvi_0447 0.88 -0.5 491,561 + Echvi_0447 0.90 -0.5 491,582 - +0.0 491,669 + -1.7 491,670 - +1.0 491,670 - -0.1 491,675 - +1.2 491,675 - +1.1 491,675 - +1.2 491,707 - -1.7 491,711 + +0.2 491,711 + -0.1 491,722 + +0.3 491,746 + -1.9 491,866 - Echvi_0448 0.29 -0.9 491,870 - Echvi_0448 0.29 -0.4 491,870 - Echvi_0448 0.29 -1.2 491,888 + Echvi_0448 0.33 -0.8 491,941 + Echvi_0448 0.42 -0.5 491,942 - Echvi_0448 0.42 +0.3 491,942 - Echvi_0448 0.42 +0.1 491,944 - Echvi_0448 0.43 -0.3 492,069 + Echvi_0448 0.66 +0.0 492,071 + Echvi_0448 0.66 -0.3 492,072 - Echvi_0448 0.66 -1.0 492,129 + Echvi_0448 0.77 -0.1 492,129 + Echvi_0448 0.77 +1.3 492,130 - Echvi_0448 0.77 -0.5 492,137 + Echvi_0448 0.78 -0.1 492,137 + Echvi_0448 0.78 -0.2 492,138 - Echvi_0448 0.78 +1.3 492,138 - Echvi_0448 0.78 -1.3 492,303 + -0.2 492,322 + +1.5 492,334 + -1.1 492,343 + -0.1 492,358 - -0.3 492,358 - -0.4 492,395 + -0.4 492,396 - -0.9 492,603 - Echvi_0449 0.22 +1.9 492,663 + Echvi_0449 0.27 -1.0 492,667 + Echvi_0449 0.27 -0.7 492,667 + Echvi_0449 0.27 +0.4 492,728 + Echvi_0449 0.33 -0.1 492,795 + Echvi_0449 0.39 -1.5 492,796 - Echvi_0449 0.39 -1.2 492,801 + Echvi_0449 0.39 +1.2 492,969 + Echvi_0449 0.54 +0.7 492,970 - Echvi_0449 0.54 -0.9 492,970 - Echvi_0449 0.54 -0.3 492,970 - Echvi_0449 0.54 -0.7 492,970 - Echvi_0449 0.54 -1.1 493,011 + Echvi_0449 0.58 -1.6 493,011 + Echvi_0449 0.58 -0.8 493,088 + Echvi_0449 0.65 -1.4 493,246 + Echvi_0449 0.79 -0.5 493,247 - Echvi_0449 0.79 -1.6 493,276 + Echvi_0449 0.82 +1.9 493,286 - Echvi_0449 0.83 +0.0 493,432 + +0.4 493,432 + -0.2 493,433 - -1.6 493,433 - +0.7 493,435 + -1.9 493,435 + -0.4 493,436 - -1.0 493,437 + +1.7 493,438 - -1.3 493,451 + +0.3 493,451 + -0.6 493,451 + -1.0 493,452 - -0.3 493,452 - -1.8 493,475 + -1.8 493,476 - -1.3 493,487 + +0.3 493,487 + -0.5 493,487 + -1.1 493,487 + -0.9 493,488 - -0.6 493,490 + -0.8 493,491 - -0.4 493,527 - -0.6 493,550 + -0.9 493,563 - -0.1 493,661 - Echvi_0450 0.19 +1.9 493,702 - Echvi_0450 0.27 +1.8 493,717 + Echvi_0450 0.29 +0.1 493,718 - Echvi_0450 0.30 +0.1 493,825 - Echvi_0450 0.50 -1.6 493,863 + Echvi_0450 0.57 +0.4 493,919 + Echvi_0450 0.67 +0.2 493,920 - Echvi_0450 0.68 -1.3 493,920 - Echvi_0450 0.68 -1.3 493,920 - Echvi_0450 0.68 +0.5 493,963 + Echvi_0450 0.76 -0.6 493,963 + Echvi_0450 0.76 +0.8 493,964 - Echvi_0450 0.76 -0.4 494,074 + +0.7 494,116 + +0.3 494,126 + -0.1 494,128 + -1.7 494,177 - +0.7 494,210 + -0.7 494,213 + +0.4 494,220 + -0.5 494,220 + -2.0 494,238 - +0.3 494,243 - +0.5 494,271 + -0.7 494,273 + -0.9 494,273 + -0.1 494,273 + +0.1 494,273 + +0.3 494,292 + -0.6 494,348 + Echvi_0451 0.11 +0.6 494,349 - Echvi_0451 0.11 -0.2 494,407 - Echvi_0451 0.15 +0.3 494,408 + Echvi_0451 0.15 +0.9 494,408 + Echvi_0451 0.15 -0.8 494,408 + Echvi_0451 0.15 +1.1 494,408 + Echvi_0451 0.15 +0.2 494,409 - Echvi_0451 0.15 -1.6 494,409 - Echvi_0451 0.15 -0.2
Or see this region's nucleotide sequence