Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0351

Experiment: m.b. Chloramphenicol 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0350 and Echvi_0351 are separated by 93 nucleotidesEchvi_0351 and Echvi_0352 are separated by 105 nucleotides Echvi_0350: Echvi_0350 - AhpC/TSA family., at 372,365 to 373,705 _0350 Echvi_0351: Echvi_0351 - Predicted transcription factor, homolog of eukaryotic MBF1, at 373,799 to 374,644 _0351 Echvi_0352: Echvi_0352 - hypothetical protein, at 374,750 to 379,777 _0352 Position (kb) 373 374 375Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 372.831 kb on + strand, within Echvi_0350at 372.834 kb on + strand, within Echvi_0350at 372.943 kb on - strand, within Echvi_0350at 372.968 kb on + strand, within Echvi_0350at 372.969 kb on - strand, within Echvi_0350at 372.979 kb on + strand, within Echvi_0350at 372.980 kb on - strand, within Echvi_0350at 373.028 kb on + strand, within Echvi_0350at 373.029 kb on - strand, within Echvi_0350at 373.039 kb on + strand, within Echvi_0350at 373.040 kb on - strand, within Echvi_0350at 373.040 kb on - strand, within Echvi_0350at 373.040 kb on - strand, within Echvi_0350at 373.042 kb on - strand, within Echvi_0350at 373.042 kb on - strand, within Echvi_0350at 373.060 kb on + strand, within Echvi_0350at 373.060 kb on + strand, within Echvi_0350at 373.062 kb on + strand, within Echvi_0350at 373.063 kb on - strand, within Echvi_0350at 373.063 kb on - strand, within Echvi_0350at 373.063 kb on - strand, within Echvi_0350at 373.279 kb on + strand, within Echvi_0350at 373.279 kb on + strand, within Echvi_0350at 373.279 kb on + strand, within Echvi_0350at 373.279 kb on + strand, within Echvi_0350at 373.281 kb on + strand, within Echvi_0350at 373.281 kb on + strand, within Echvi_0350at 373.282 kb on - strand, within Echvi_0350at 373.375 kb on + strand, within Echvi_0350at 373.376 kb on - strand, within Echvi_0350at 373.376 kb on - strand, within Echvi_0350at 373.378 kb on - strand, within Echvi_0350at 373.398 kb on + strand, within Echvi_0350at 373.399 kb on - strand, within Echvi_0350at 373.399 kb on - strand, within Echvi_0350at 373.445 kb on - strand, within Echvi_0350at 373.479 kb on + strand, within Echvi_0350at 373.479 kb on + strandat 373.480 kb on - strand, within Echvi_0350at 373.490 kb on + strand, within Echvi_0350at 373.491 kb on - strand, within Echvi_0350at 373.542 kb on + strand, within Echvi_0350at 373.543 kb on - strand, within Echvi_0350at 373.611 kb on - strandat 373.727 kb on + strandat 373.736 kb on - strandat 373.736 kb on - strandat 373.738 kb on + strandat 373.745 kb on + strandat 373.745 kb on + strandat 373.797 kb on + strandat 373.797 kb on + strandat 373.798 kb on - strandat 373.801 kb on - strandat 373.965 kb on - strand, within Echvi_0351at 373.984 kb on - strand, within Echvi_0351at 374.066 kb on + strand, within Echvi_0351at 374.109 kb on + strand, within Echvi_0351at 374.110 kb on - strand, within Echvi_0351at 374.226 kb on + strand, within Echvi_0351at 374.227 kb on - strand, within Echvi_0351at 374.263 kb on - strand, within Echvi_0351at 374.342 kb on + strand, within Echvi_0351at 374.366 kb on + strand, within Echvi_0351at 374.367 kb on - strand, within Echvi_0351at 374.403 kb on - strand, within Echvi_0351at 374.534 kb on - strand, within Echvi_0351at 374.627 kb on + strandat 374.669 kb on - strandat 374.669 kb on - strandat 374.706 kb on + strandat 374.763 kb on + strandat 374.771 kb on - strandat 374.771 kb on - strandat 374.771 kb on - strandat 374.775 kb on + strandat 374.859 kb on + strandat 374.859 kb on + strandat 374.860 kb on - strandat 374.860 kb on - strandat 374.860 kb on - strandat 374.911 kb on - strandat 374.920 kb on + strandat 374.921 kb on - strandat 374.921 kb on - strandat 375.038 kb on - strandat 375.097 kb on + strandat 375.098 kb on - strandat 375.098 kb on - strandat 375.098 kb on - strandat 375.186 kb on + strandat 375.187 kb on - strandat 375.226 kb on + strandat 375.340 kb on + strand, within Echvi_0352at 375.424 kb on + strand, within Echvi_0352at 375.424 kb on + strand, within Echvi_0352at 375.427 kb on - strand, within Echvi_0352at 375.427 kb on - strand, within Echvi_0352at 375.427 kb on - strand, within Echvi_0352at 375.486 kb on + strand, within Echvi_0352at 375.487 kb on - strand, within Echvi_0352at 375.508 kb on + strand, within Echvi_0352at 375.508 kb on + strand, within Echvi_0352at 375.531 kb on + strand, within Echvi_0352at 375.609 kb on + strand, within Echvi_0352at 375.610 kb on - strand, within Echvi_0352

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.005 mg/ml
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372,831 + Echvi_0350 0.35 +0.8
372,834 + Echvi_0350 0.35 -1.1
372,943 - Echvi_0350 0.43 -0.4
372,968 + Echvi_0350 0.45 -0.5
372,969 - Echvi_0350 0.45 -2.5
372,979 + Echvi_0350 0.46 -0.1
372,980 - Echvi_0350 0.46 +2.3
373,028 + Echvi_0350 0.49 +1.0
373,029 - Echvi_0350 0.50 +0.2
373,039 + Echvi_0350 0.50 -0.9
373,040 - Echvi_0350 0.50 -0.5
373,040 - Echvi_0350 0.50 +0.1
373,040 - Echvi_0350 0.50 -0.5
373,042 - Echvi_0350 0.50 -0.4
373,042 - Echvi_0350 0.50 -0.3
373,060 + Echvi_0350 0.52 +0.4
373,060 + Echvi_0350 0.52 +0.3
373,062 + Echvi_0350 0.52 -2.9
373,063 - Echvi_0350 0.52 -0.1
373,063 - Echvi_0350 0.52 +0.6
373,063 - Echvi_0350 0.52 -0.1
373,279 + Echvi_0350 0.68 +1.5
373,279 + Echvi_0350 0.68 -0.7
373,279 + Echvi_0350 0.68 -0.7
373,279 + Echvi_0350 0.68 +0.5
373,281 + Echvi_0350 0.68 -0.0
373,281 + Echvi_0350 0.68 -1.8
373,282 - Echvi_0350 0.68 -0.1
373,375 + Echvi_0350 0.75 -0.4
373,376 - Echvi_0350 0.75 +1.1
373,376 - Echvi_0350 0.75 +1.1
373,378 - Echvi_0350 0.76 -0.3
373,398 + Echvi_0350 0.77 -2.0
373,399 - Echvi_0350 0.77 -0.5
373,399 - Echvi_0350 0.77 -1.5
373,445 - Echvi_0350 0.81 -0.6
373,479 + Echvi_0350 0.83 +0.1
373,479 + +0.9
373,480 - Echvi_0350 0.83 +0.4
373,490 + Echvi_0350 0.84 +0.9
373,491 - Echvi_0350 0.84 -0.1
373,542 + Echvi_0350 0.88 -1.8
373,543 - Echvi_0350 0.88 -0.9
373,611 - -0.8
373,727 + +0.1
373,736 - -0.3
373,736 - +0.2
373,738 + +1.0
373,745 + -0.2
373,745 + +0.4
373,797 + +0.7
373,797 + -0.8
373,798 - +1.4
373,801 - +0.2
373,965 - Echvi_0351 0.20 +1.9
373,984 - Echvi_0351 0.22 -0.0
374,066 + Echvi_0351 0.32 +1.9
374,109 + Echvi_0351 0.37 +0.3
374,110 - Echvi_0351 0.37 +1.4
374,226 + Echvi_0351 0.50 +0.5
374,227 - Echvi_0351 0.51 +0.1
374,263 - Echvi_0351 0.55 +0.1
374,342 + Echvi_0351 0.64 +1.0
374,366 + Echvi_0351 0.67 +0.9
374,367 - Echvi_0351 0.67 -3.1
374,403 - Echvi_0351 0.71 -0.3
374,534 - Echvi_0351 0.87 +0.2
374,627 + -0.2
374,669 - -0.0
374,669 - +0.1
374,706 + -0.4
374,763 + -0.3
374,771 - -0.8
374,771 - -1.9
374,771 - -0.1
374,775 + -0.2
374,859 + +0.9
374,859 + -0.5
374,860 - +0.6
374,860 - +0.6
374,860 - -0.1
374,911 - -1.1
374,920 + -0.9
374,921 - +0.6
374,921 - -0.2
375,038 - +1.9
375,097 + +0.9
375,098 - +0.2
375,098 - +2.6
375,098 - -0.5
375,186 + +0.1
375,187 - +0.4
375,226 + +0.2
375,340 + Echvi_0352 0.12 +2.1
375,424 + Echvi_0352 0.13 -1.0
375,424 + Echvi_0352 0.13 -1.9
375,427 - Echvi_0352 0.13 +0.3
375,427 - Echvi_0352 0.13 +0.6
375,427 - Echvi_0352 0.13 +0.4
375,486 + Echvi_0352 0.15 +0.1
375,487 - Echvi_0352 0.15 +1.2
375,508 + Echvi_0352 0.15 +0.0
375,508 + Echvi_0352 0.15 -0.7
375,531 + Echvi_0352 0.16 +0.8
375,609 + Echvi_0352 0.17 +0.3
375,610 - Echvi_0352 0.17 -0.3

Or see this region's nucleotide sequence