Strain Fitness in Agrobacterium fabrum C58 around Atu3040

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3039 and Atu3040 overlap by 8 nucleotidesAtu3040 and Atu3041 are separated by 43 nucleotides Atu3039: Atu3039 - hydantoinase beta subunit-like protein, at 33,615 to 35,171 Atu3039 Atu3040: Atu3040 - hypothetical protein, at 35,164 to 36,297 Atu3040 Atu3041: Atu3041 - dipeptide ABC transporter substrate-binding protein, at 36,341 to 37,954 Atu3041 Position (kb) 35 36 37Strain fitness (log2 ratio) -1 0 1 2at 34.260 kb on + strand, within Atu3039at 34.299 kb on + strand, within Atu3039at 34.317 kb on - strand, within Atu3039at 34.337 kb on - strand, within Atu3039at 34.350 kb on + strand, within Atu3039at 34.353 kb on - strand, within Atu3039at 34.407 kb on + strand, within Atu3039at 34.415 kb on - strand, within Atu3039at 34.418 kb on - strand, within Atu3039at 34.567 kb on + strand, within Atu3039at 34.575 kb on - strand, within Atu3039at 34.657 kb on + strand, within Atu3039at 34.665 kb on - strand, within Atu3039at 34.699 kb on + strand, within Atu3039at 34.745 kb on + strand, within Atu3039at 34.800 kb on - strand, within Atu3039at 34.902 kb on - strand, within Atu3039at 34.913 kb on + strand, within Atu3039at 34.913 kb on + strand, within Atu3039at 34.938 kb on + strand, within Atu3039at 34.951 kb on - strand, within Atu3039at 34.972 kb on - strand, within Atu3039at 35.065 kb on + strandat 35.065 kb on + strandat 35.132 kb on + strandat 35.256 kb on + strandat 35.362 kb on - strand, within Atu3040at 35.373 kb on + strand, within Atu3040at 35.401 kb on + strand, within Atu3040at 35.440 kb on + strand, within Atu3040at 35.448 kb on - strand, within Atu3040at 35.551 kb on - strand, within Atu3040at 35.665 kb on + strand, within Atu3040at 35.677 kb on + strand, within Atu3040at 35.680 kb on + strand, within Atu3040at 35.719 kb on + strand, within Atu3040at 35.725 kb on + strand, within Atu3040at 35.727 kb on - strand, within Atu3040at 35.733 kb on - strand, within Atu3040at 35.797 kb on + strand, within Atu3040at 35.805 kb on - strand, within Atu3040at 35.892 kb on + strand, within Atu3040at 35.989 kb on - strand, within Atu3040at 35.999 kb on - strand, within Atu3040at 36.127 kb on - strand, within Atu3040at 36.190 kb on + strandat 36.243 kb on - strandat 36.243 kb on - strandat 36.290 kb on - strandat 36.290 kb on - strandat 36.290 kb on - strandat 36.375 kb on - strandat 36.469 kb on + strandat 36.588 kb on - strand, within Atu3041at 36.634 kb on + strand, within Atu3041at 36.642 kb on + strand, within Atu3041at 36.642 kb on + strand, within Atu3041at 36.650 kb on - strand, within Atu3041at 36.650 kb on - strand, within Atu3041at 36.650 kb on - strand, within Atu3041at 36.798 kb on + strand, within Atu3041at 36.862 kb on - strand, within Atu3041at 36.918 kb on - strand, within Atu3041at 36.923 kb on + strand, within Atu3041at 36.925 kb on - strand, within Atu3041at 36.948 kb on + strand, within Atu3041at 36.995 kb on + strand, within Atu3041at 37.064 kb on + strand, within Atu3041at 37.072 kb on - strand, within Atu3041at 37.128 kb on + strand, within Atu3041at 37.176 kb on - strand, within Atu3041at 37.194 kb on - strand, within Atu3041at 37.217 kb on + strand, within Atu3041at 37.234 kb on + strand, within Atu3041at 37.235 kb on - strand, within Atu3041at 37.288 kb on + strand, within Atu3041at 37.296 kb on - strand, within Atu3041

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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34,260 + Atu3039 0.41 +0.2
34,299 + Atu3039 0.44 +0.3
34,317 - Atu3039 0.45 -0.4
34,337 - Atu3039 0.46 -0.0
34,350 + Atu3039 0.47 +0.8
34,353 - Atu3039 0.47 +0.9
34,407 + Atu3039 0.51 +0.4
34,415 - Atu3039 0.51 +0.2
34,418 - Atu3039 0.52 +1.1
34,567 + Atu3039 0.61 +0.4
34,575 - Atu3039 0.62 +0.3
34,657 + Atu3039 0.67 +0.5
34,665 - Atu3039 0.67 +0.4
34,699 + Atu3039 0.70 +0.4
34,745 + Atu3039 0.73 +0.1
34,800 - Atu3039 0.76 +0.6
34,902 - Atu3039 0.83 +0.1
34,913 + Atu3039 0.83 +0.3
34,913 + Atu3039 0.83 +0.8
34,938 + Atu3039 0.85 +2.1
34,951 - Atu3039 0.86 +0.6
34,972 - Atu3039 0.87 +0.8
35,065 + +0.6
35,065 + +0.1
35,132 + +0.3
35,256 + -0.3
35,362 - Atu3040 0.17 -0.4
35,373 + Atu3040 0.18 +0.5
35,401 + Atu3040 0.21 +0.8
35,440 + Atu3040 0.24 -0.6
35,448 - Atu3040 0.25 +0.2
35,551 - Atu3040 0.34 +1.5
35,665 + Atu3040 0.44 +0.6
35,677 + Atu3040 0.45 +0.5
35,680 + Atu3040 0.46 +0.7
35,719 + Atu3040 0.49 +0.5
35,725 + Atu3040 0.49 +0.5
35,727 - Atu3040 0.50 +0.5
35,733 - Atu3040 0.50 +0.8
35,797 + Atu3040 0.56 +0.2
35,805 - Atu3040 0.57 +1.1
35,892 + Atu3040 0.64 -0.9
35,989 - Atu3040 0.73 +0.5
35,999 - Atu3040 0.74 +0.5
36,127 - Atu3040 0.85 +0.6
36,190 + +0.4
36,243 - -1.1
36,243 - +0.8
36,290 - +0.4
36,290 - +1.4
36,290 - +0.9
36,375 - +0.8
36,469 + +0.6
36,588 - Atu3041 0.15 +0.3
36,634 + Atu3041 0.18 +0.5
36,642 + Atu3041 0.19 +0.2
36,642 + Atu3041 0.19 +0.5
36,650 - Atu3041 0.19 +0.7
36,650 - Atu3041 0.19 +0.7
36,650 - Atu3041 0.19 +0.8
36,798 + Atu3041 0.28 +0.4
36,862 - Atu3041 0.32 +0.4
36,918 - Atu3041 0.36 +0.5
36,923 + Atu3041 0.36 +0.4
36,925 - Atu3041 0.36 +0.5
36,948 + Atu3041 0.38 +0.2
36,995 + Atu3041 0.41 +0.6
37,064 + Atu3041 0.45 +1.0
37,072 - Atu3041 0.45 +1.0
37,128 + Atu3041 0.49 +1.5
37,176 - Atu3041 0.52 +0.2
37,194 - Atu3041 0.53 +1.2
37,217 + Atu3041 0.54 +1.2
37,234 + Atu3041 0.55 +0.6
37,235 - Atu3041 0.55 +1.2
37,288 + Atu3041 0.59 -0.4
37,296 - Atu3041 0.59 +0.4

Or see this region's nucleotide sequence