Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0592 and Atu0593 are separated by 1 nucleotides Atu0593 and Atu0594 are separated by 37 nucleotides
Atu0592: Atu0592 - ABC transporter, membrane spanning protein, at 576,114 to 577,034
Atu0592
Atu0593: Atu0593 - ABC transporter, membrane spanning protein, at 577,036 to 578,196
Atu0593
Atu0594: Atu0594 - alpha-glucosidase, at 578,234 to 579,889
Atu0594
Position (kb) 577
578
579 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 576.057 kb on - strand at 576.138 kb on - strand at 576.163 kb on - strand at 576.215 kb on - strand, within Atu0592 at 576.257 kb on + strand, within Atu0592 at 576.415 kb on - strand, within Atu0592 at 576.542 kb on + strand, within Atu0592 at 576.557 kb on + strand, within Atu0592 at 576.565 kb on - strand, within Atu0592 at 576.565 kb on - strand, within Atu0592 at 576.565 kb on - strand, within Atu0592 at 576.767 kb on + strand, within Atu0592 at 576.782 kb on + strand, within Atu0592 at 576.814 kb on + strand, within Atu0592 at 576.981 kb on - strand at 577.035 kb on + strand at 577.089 kb on + strand at 577.094 kb on + strand at 577.096 kb on + strand at 577.096 kb on + strand at 577.213 kb on - strand, within Atu0593 at 577.415 kb on + strand, within Atu0593 at 577.426 kb on - strand, within Atu0593 at 577.428 kb on + strand, within Atu0593 at 577.442 kb on + strand, within Atu0593 at 577.443 kb on + strand, within Atu0593 at 577.443 kb on - strand, within Atu0593 at 577.522 kb on + strand, within Atu0593 at 577.530 kb on - strand, within Atu0593 at 577.586 kb on + strand, within Atu0593 at 577.627 kb on - strand, within Atu0593 at 577.769 kb on - strand, within Atu0593 at 577.817 kb on + strand, within Atu0593 at 578.027 kb on + strand, within Atu0593 at 578.151 kb on - strand at 578.156 kb on - strand at 578.219 kb on + strand at 578.326 kb on - strand at 578.328 kb on + strand at 578.370 kb on + strand at 578.546 kb on - strand, within Atu0594 at 578.637 kb on + strand, within Atu0594 at 578.646 kb on + strand, within Atu0594 at 578.752 kb on + strand, within Atu0594 at 578.787 kb on + strand, within Atu0594 at 578.787 kb on + strand, within Atu0594 at 578.803 kb on - strand, within Atu0594 at 578.943 kb on + strand, within Atu0594 at 579.104 kb on + strand, within Atu0594 at 579.107 kb on + strand, within Atu0594 at 579.180 kb on - strand, within Atu0594
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 576,057 - -2.2 576,138 - -1.7 576,163 - -2.2 576,215 - Atu0592 0.11 -3.0 576,257 + Atu0592 0.16 -2.2 576,415 - Atu0592 0.33 -3.4 576,542 + Atu0592 0.46 -1.4 576,557 + Atu0592 0.48 -2.2 576,565 - Atu0592 0.49 -3.1 576,565 - Atu0592 0.49 -2.0 576,565 - Atu0592 0.49 -1.2 576,767 + Atu0592 0.71 -4.5 576,782 + Atu0592 0.73 -1.4 576,814 + Atu0592 0.76 -2.6 576,981 - -2.3 577,035 + -2.6 577,089 + -2.7 577,094 + -0.2 577,096 + -2.9 577,096 + -2.0 577,213 - Atu0593 0.15 -3.3 577,415 + Atu0593 0.33 -1.1 577,426 - Atu0593 0.34 -0.6 577,428 + Atu0593 0.34 -2.1 577,442 + Atu0593 0.35 -1.4 577,443 + Atu0593 0.35 -2.0 577,443 - Atu0593 0.35 -1.4 577,522 + Atu0593 0.42 -2.4 577,530 - Atu0593 0.43 -1.3 577,586 + Atu0593 0.47 -0.5 577,627 - Atu0593 0.51 -2.1 577,769 - Atu0593 0.63 -1.7 577,817 + Atu0593 0.67 -4.1 578,027 + Atu0593 0.85 -2.7 578,151 - -2.5 578,156 - -2.2 578,219 + -1.0 578,326 - -1.3 578,328 + -2.2 578,370 + -2.8 578,546 - Atu0594 0.19 -1.9 578,637 + Atu0594 0.24 -2.2 578,646 + Atu0594 0.25 +1.0 578,752 + Atu0594 0.31 -1.2 578,787 + Atu0594 0.33 -0.9 578,787 + Atu0594 0.33 -1.8 578,803 - Atu0594 0.34 -0.4 578,943 + Atu0594 0.43 -1.2 579,104 + Atu0594 0.53 -1.9 579,107 + Atu0594 0.53 -1.3 579,180 - Atu0594 0.57 -1.9
Or see this region's nucleotide sequence