Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0591 and Atu0592 are separated by 248 nucleotides Atu0592 and Atu0593 are separated by 1 nucleotides
Atu0591: Atu0591 - ABC transporter, substrate binding protein (alpha-glucoside), at 574,504 to 575,865
Atu0591
Atu0592: Atu0592 - ABC transporter, membrane spanning protein, at 576,114 to 577,034
Atu0592
Atu0593: Atu0593 - ABC transporter, membrane spanning protein, at 577,036 to 578,196
Atu0593
Position (kb) 576
577
578 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 575.148 kb on - strand, within Atu0591 at 575.222 kb on - strand, within Atu0591 at 575.368 kb on + strand, within Atu0591 at 575.536 kb on + strand, within Atu0591 at 575.628 kb on + strand, within Atu0591 at 575.636 kb on - strand, within Atu0591 at 575.644 kb on + strand, within Atu0591 at 575.646 kb on + strand, within Atu0591 at 575.646 kb on + strand, within Atu0591 at 575.646 kb on + strand, within Atu0591 at 575.646 kb on + strand, within Atu0591 at 575.646 kb on + strand, within Atu0591 at 575.652 kb on - strand, within Atu0591 at 575.654 kb on - strand, within Atu0591 at 575.654 kb on - strand, within Atu0591 at 575.862 kb on - strand at 575.968 kb on + strand at 575.980 kb on + strand at 575.988 kb on - strand at 576.005 kb on + strand at 576.005 kb on + strand at 576.013 kb on - strand at 576.020 kb on - strand at 576.057 kb on - strand at 576.138 kb on - strand at 576.163 kb on - strand at 576.215 kb on - strand, within Atu0592 at 576.257 kb on + strand, within Atu0592 at 576.415 kb on - strand, within Atu0592 at 576.542 kb on + strand, within Atu0592 at 576.557 kb on + strand, within Atu0592 at 576.565 kb on - strand, within Atu0592 at 576.565 kb on - strand, within Atu0592 at 576.565 kb on - strand, within Atu0592 at 576.767 kb on + strand, within Atu0592 at 576.782 kb on + strand, within Atu0592 at 576.814 kb on + strand, within Atu0592 at 576.981 kb on - strand at 577.035 kb on + strand at 577.089 kb on + strand at 577.094 kb on + strand at 577.096 kb on + strand at 577.096 kb on + strand at 577.213 kb on - strand, within Atu0593 at 577.415 kb on + strand, within Atu0593 at 577.426 kb on - strand, within Atu0593 at 577.428 kb on + strand, within Atu0593 at 577.442 kb on + strand, within Atu0593 at 577.443 kb on + strand, within Atu0593 at 577.443 kb on - strand, within Atu0593 at 577.522 kb on + strand, within Atu0593 at 577.530 kb on - strand, within Atu0593 at 577.586 kb on + strand, within Atu0593 at 577.627 kb on - strand, within Atu0593 at 577.769 kb on - strand, within Atu0593 at 577.817 kb on + strand, within Atu0593 at 578.027 kb on + strand, within Atu0593
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 575,148 - Atu0591 0.47 -0.9 575,222 - Atu0591 0.53 -0.2 575,368 + Atu0591 0.63 -3.5 575,536 + Atu0591 0.76 -1.9 575,628 + Atu0591 0.83 -2.0 575,636 - Atu0591 0.83 -4.6 575,644 + Atu0591 0.84 +0.2 575,646 + Atu0591 0.84 -3.4 575,646 + Atu0591 0.84 -4.3 575,646 + Atu0591 0.84 -2.6 575,646 + Atu0591 0.84 -4.3 575,646 + Atu0591 0.84 -2.5 575,652 - Atu0591 0.84 -2.7 575,654 - Atu0591 0.84 -0.5 575,654 - Atu0591 0.84 -2.2 575,862 - -2.1 575,968 + -1.8 575,980 + -3.3 575,988 - -1.8 576,005 + -0.5 576,005 + -2.6 576,013 - -4.0 576,020 - -3.2 576,057 - -2.2 576,138 - -1.7 576,163 - -2.2 576,215 - Atu0592 0.11 -3.0 576,257 + Atu0592 0.16 -2.2 576,415 - Atu0592 0.33 -3.4 576,542 + Atu0592 0.46 -1.4 576,557 + Atu0592 0.48 -2.2 576,565 - Atu0592 0.49 -3.1 576,565 - Atu0592 0.49 -2.0 576,565 - Atu0592 0.49 -1.2 576,767 + Atu0592 0.71 -4.5 576,782 + Atu0592 0.73 -1.4 576,814 + Atu0592 0.76 -2.6 576,981 - -2.3 577,035 + -2.6 577,089 + -2.7 577,094 + -0.2 577,096 + -2.9 577,096 + -2.0 577,213 - Atu0593 0.15 -3.3 577,415 + Atu0593 0.33 -1.1 577,426 - Atu0593 0.34 -0.6 577,428 + Atu0593 0.34 -2.1 577,442 + Atu0593 0.35 -1.4 577,443 + Atu0593 0.35 -2.0 577,443 - Atu0593 0.35 -1.4 577,522 + Atu0593 0.42 -2.4 577,530 - Atu0593 0.43 -1.3 577,586 + Atu0593 0.47 -0.5 577,627 - Atu0593 0.51 -2.1 577,769 - Atu0593 0.63 -1.7 577,817 + Atu0593 0.67 -4.1 578,027 + Atu0593 0.85 -2.7
Or see this region's nucleotide sequence