Experiment: m.b. Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4357 and Echvi_4358 are separated by 294 nucleotides Echvi_4358 and Echvi_4359 are separated by 1 nucleotides
Echvi_4357: Echvi_4357 - Protein of unknown function (DUF3714)., at 5,213,571 to 5,214,785
_4357
Echvi_4358: Echvi_4358 - Bacteroides conjugative transposon TraK protein, at 5,215,080 to 5,215,697
_4358
Echvi_4359: Echvi_4359 - Bacteroides conjugative transposon TraJ protein, at 5,215,699 to 5,216,739
_4359
Position (kb) 5215
5216 Strain fitness (log2 ratio) -1
0
1 at 5214.226 kb on - strand, within Echvi_4357 at 5214.539 kb on - strand, within Echvi_4357 at 5214.596 kb on - strand, within Echvi_4357 at 5214.824 kb on - strand at 5214.959 kb on + strand at 5215.065 kb on + strand at 5215.066 kb on - strand at 5215.068 kb on + strand at 5215.202 kb on + strand, within Echvi_4358 at 5215.202 kb on + strand, within Echvi_4358 at 5215.336 kb on + strand, within Echvi_4358 at 5215.336 kb on + strand, within Echvi_4358 at 5215.336 kb on + strand, within Echvi_4358 at 5215.553 kb on - strand, within Echvi_4358 at 5215.553 kb on - strand, within Echvi_4358 at 5215.617 kb on + strand, within Echvi_4358 at 5215.617 kb on + strand, within Echvi_4358 at 5215.618 kb on - strand, within Echvi_4358 at 5215.674 kb on + strand at 5215.674 kb on + strand at 5215.674 kb on + strand at 5215.675 kb on - strand at 5215.697 kb on + strand at 5215.704 kb on + strand at 5215.743 kb on + strand at 5215.816 kb on - strand, within Echvi_4359 at 5215.820 kb on + strand, within Echvi_4359 at 5215.982 kb on + strand, within Echvi_4359 at 5215.982 kb on + strand, within Echvi_4359 at 5215.982 kb on + strand, within Echvi_4359 at 5215.983 kb on - strand, within Echvi_4359 at 5215.983 kb on - strand, within Echvi_4359 at 5215.992 kb on + strand, within Echvi_4359 at 5215.992 kb on + strand, within Echvi_4359 at 5215.992 kb on + strand, within Echvi_4359 at 5216.088 kb on - strand, within Echvi_4359 at 5216.088 kb on - strand, within Echvi_4359 at 5216.103 kb on + strand, within Echvi_4359 at 5216.130 kb on - strand, within Echvi_4359 at 5216.264 kb on + strand, within Echvi_4359 at 5216.271 kb on - strand, within Echvi_4359 at 5216.309 kb on + strand, within Echvi_4359 at 5216.309 kb on + strand, within Echvi_4359 at 5216.309 kb on + strand, within Echvi_4359 at 5216.309 kb on + strand, within Echvi_4359 at 5216.310 kb on - strand, within Echvi_4359 at 5216.389 kb on + strand, within Echvi_4359 at 5216.389 kb on + strand, within Echvi_4359 at 5216.556 kb on - strand, within Echvi_4359 at 5216.674 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml remove 5,214,226 - Echvi_4357 0.54 -0.3 5,214,539 - Echvi_4357 0.80 +0.1 5,214,596 - Echvi_4357 0.84 +1.2 5,214,824 - -1.7 5,214,959 + -0.3 5,215,065 + +1.1 5,215,066 - +0.1 5,215,068 + -1.4 5,215,202 + Echvi_4358 0.20 -1.0 5,215,202 + Echvi_4358 0.20 +1.0 5,215,336 + Echvi_4358 0.41 -0.5 5,215,336 + Echvi_4358 0.41 +0.2 5,215,336 + Echvi_4358 0.41 -0.6 5,215,553 - Echvi_4358 0.77 -0.9 5,215,553 - Echvi_4358 0.77 +0.9 5,215,617 + Echvi_4358 0.87 +1.7 5,215,617 + Echvi_4358 0.87 -0.5 5,215,618 - Echvi_4358 0.87 +0.4 5,215,674 + -0.1 5,215,674 + -0.6 5,215,674 + +0.8 5,215,675 - -0.5 5,215,697 + -0.1 5,215,704 + +1.0 5,215,743 + -0.9 5,215,816 - Echvi_4359 0.11 -0.1 5,215,820 + Echvi_4359 0.12 -0.7 5,215,982 + Echvi_4359 0.27 -0.0 5,215,982 + Echvi_4359 0.27 -0.1 5,215,982 + Echvi_4359 0.27 +0.2 5,215,983 - Echvi_4359 0.27 -0.1 5,215,983 - Echvi_4359 0.27 -1.1 5,215,992 + Echvi_4359 0.28 +0.1 5,215,992 + Echvi_4359 0.28 -0.2 5,215,992 + Echvi_4359 0.28 +0.5 5,216,088 - Echvi_4359 0.37 -0.9 5,216,088 - Echvi_4359 0.37 -0.2 5,216,103 + Echvi_4359 0.39 +1.1 5,216,130 - Echvi_4359 0.41 -0.1 5,216,264 + Echvi_4359 0.54 +1.0 5,216,271 - Echvi_4359 0.55 +0.5 5,216,309 + Echvi_4359 0.59 -0.7 5,216,309 + Echvi_4359 0.59 +0.4 5,216,309 + Echvi_4359 0.59 +0.4 5,216,309 + Echvi_4359 0.59 +0.7 5,216,310 - Echvi_4359 0.59 -0.8 5,216,389 + Echvi_4359 0.66 -0.3 5,216,389 + Echvi_4359 0.66 -0.6 5,216,556 - Echvi_4359 0.82 +0.2 5,216,674 + -1.3
Or see this region's nucleotide sequence