Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4189

Experiment: m.b. Chloramphenicol 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Chloramphenicol 0.001 mg/ml
5,004,489	+				-0.9
5,004,499	+				-1.9
5,004,499	+				+0.2
5,004,499	+				+0.3
5,004,500	-				-0.4
5,004,500	-				-1.7
5,004,500	-				-0.1
5,004,500	-				+0.5
5,004,535	-				-1.8
5,004,559	-				+1.1
5,004,577	+				-0.7
5,004,591	+				-0.4
5,004,614	+				-1.7
5,004,623	+				+0.7
5,004,623	+				-0.3
5,004,632	+				-0.7
5,004,649	-				-0.5
5,004,662	+				+0.1
5,004,662	+				-1.1
5,004,751	-		Echvi_4187	0.21	-0.1
5,004,761	+		Echvi_4187	0.22	-0.1
5,004,833	+		Echvi_4187	0.32	+0.1
5,004,848	-		Echvi_4187	0.34	+0.6
5,004,862	+		Echvi_4187	0.36	-0.4
5,004,863	-		Echvi_4187	0.36	+0.4
5,004,870	-		Echvi_4187	0.37	-0.7
5,004,950	+		Echvi_4187	0.48	-1.7
5,004,997	+		Echvi_4187	0.55	+0.0
5,004,997	+		Echvi_4187	0.55	-0.4
5,004,997	+		Echvi_4187	0.55	+0.3
5,004,997	+		Echvi_4187	0.55	-0.1
5,004,997	+		Echvi_4187	0.55	-0.1
5,004,998	-		Echvi_4187	0.55	+0.4
5,004,998	-		Echvi_4187	0.55	+2.2
5,005,046	+		Echvi_4187	0.62	+0.4
5,005,048	+		Echvi_4187	0.62	-0.5
5,005,049	-		Echvi_4187	0.62	+3.1
5,005,052	+		Echvi_4187	0.62	+0.7
5,005,052	+		Echvi_4187	0.62	+0.4
5,005,053	-		Echvi_4187	0.63	+0.1
5,005,053	-		Echvi_4187	0.63	-0.1
5,005,088	+		Echvi_4187	0.67	+1.4
5,005,110	-		Echvi_4187	0.70	+2.1
5,005,114	+		Echvi_4187	0.71	-1.4
5,005,115	-		Echvi_4187	0.71	+0.3
5,005,148	+		Echvi_4187	0.76	+0.2
5,005,148	+		Echvi_4187	0.76	-0.8
5,005,148	+		Echvi_4187	0.76	-0.3
5,005,170	+		Echvi_4187	0.79	-0.4
5,005,170	+		Echvi_4187	0.79	-1.4
5,005,171	-		Echvi_4187	0.79	+2.4
5,005,178	+		Echvi_4187	0.80	+0.6
5,005,278	+				+0.1
5,005,278	+				-0.1
5,005,279	-				-0.8
5,005,309	-				+0.4
5,005,318	-				+0.8
5,005,358	+				+1.1
5,005,359	-				-0.7
5,005,359	-				+0.4
5,005,359	-				-0.2
5,005,369	+		Echvi_4188	0.15	-0.9
5,005,369	+		Echvi_4188	0.15	+0.5
5,005,370	-		Echvi_4188	0.16	+0.1
5,005,372	+		Echvi_4188	0.18	+2.2
5,005,372	+		Echvi_4188	0.18	+0.2
5,005,373	-		Echvi_4188	0.19	+1.6
5,005,386	+		Echvi_4188	0.31	-0.9
5,005,395	+		Echvi_4188	0.40	-0.6
5,005,396	-		Echvi_4188	0.41	-0.5
5,005,416	-		Echvi_4188	0.60	-0.2
5,005,416	-		Echvi_4188	0.60	+0.1
5,005,416	-		Echvi_4188	0.60	+0.1
5,005,416	-		Echvi_4188	0.60	+0.0
5,005,447	-				-0.4
5,005,447	-				+0.9
5,005,466	+				-0.4
5,005,467	-				-2.0
5,005,467	-				+1.0
5,005,544	+		Echvi_4189	0.23	-0.7
5,005,571	-		Echvi_4189	0.31	+0.6
5,005,604	+		Echvi_4189	0.40	-1.4
5,005,622	+		Echvi_4189	0.44	+0.6
5,005,647	-		Echvi_4189	0.51	-0.3
5,005,661	+		Echvi_4189	0.55	-1.3
5,005,662	-		Echvi_4189	0.55	+2.2
5,005,678	-		Echvi_4189	0.59	-0.1
5,005,715	-		Echvi_4189	0.69	-1.0
5,005,715	-		Echvi_4189	0.69	-1.4
5,005,720	-		Echvi_4189	0.71	-0.4
5,005,720	-		Echvi_4189	0.71	+0.4
5,005,806	-				+0.8
5,005,806	-				-0.6
5,005,824	+				+0.6
5,005,824	+				-1.3
5,005,824	+				-1.1
5,005,825	-				+0.8
5,005,825	-				+0.6
5,005,828	+				-1.0
5,005,828	+				+0.3
5,005,828	+				-0.8
5,005,829	-				-0.1
5,005,829	-				+0.7
5,005,829	-				-0.9
5,005,829	-				-1.7
5,005,832	+				-0.2
5,005,832	+				+0.0
5,005,832	+				-0.8
5,005,832	+				+0.3
5,005,832	+				-0.6
5,005,832	+				-0.5
5,005,833	-				-1.1
5,005,852	+		Echvi_4190	0.14	+2.6
5,005,870	+		Echvi_4190	0.26	-1.5
5,005,870	+		Echvi_4190	0.26	+0.9
5,005,873	+		Echvi_4190	0.28	-1.2
5,005,874	-		Echvi_4190	0.29	-0.4
5,005,890	+		Echvi_4190	0.39	-1.1
5,005,890	+		Echvi_4190	0.39	-0.1
5,005,890	+		Echvi_4190	0.39	+0.6
5,005,891	-		Echvi_4190	0.40	-0.4
5,005,893	-		Echvi_4190	0.41	+0.8
5,005,912	+		Echvi_4190	0.54	+0.3
5,005,912	+		Echvi_4190	0.54	-0.8
5,005,913	-		Echvi_4190	0.55	-0.6
5,005,913	-		Echvi_4190	0.55	+1.6
5,005,932	+		Echvi_4190	0.67	+0.3
5,005,932	+		Echvi_4190	0.67	-0.0
5,005,933	-		Echvi_4190	0.68	+0.0
5,005,933	-		Echvi_4190	0.68	-1.1
5,005,942	-		Echvi_4190	0.74	+0.2
5,005,990	-				-0.5
5,006,015	-				+0.0
5,006,017	+				+0.3
5,006,018	-				-0.8
5,006,118	-		Echvi_4191	0.27	+0.5
5,006,170	+		Echvi_4191	0.41	-1.0
5,006,171	-		Echvi_4191	0.41	-0.5
5,006,173	+		Echvi_4191	0.42	-1.1
5,006,247	+		Echvi_4191	0.62	+0.8
5,006,271	-		Echvi_4191	0.68	+0.6
5,006,283	+		Echvi_4191	0.71	-1.7
5,006,284	-		Echvi_4191	0.71	+1.1
5,006,284	-		Echvi_4191	0.71	-0.1
5,006,286	+		Echvi_4191	0.72	+0.9
5,006,287	-		Echvi_4191	0.72	-0.0
5,006,287	-		Echvi_4191	0.72	-0.3
5,006,287	-		Echvi_4191	0.72	-0.0
5,006,287	-		Echvi_4191	0.72	-0.3
5,006,355	-				-0.7
5,006,359	+				-1.4
5,006,359	+				+0.9
5,006,360	-				-0.4
5,006,360	-				+0.3
5,006,361	+				+1.1
5,006,361	+				+0.9
5,006,362	-				+0.1
5,006,362	-				-1.3
5,006,362	-				-1.2
5,006,448	-				+0.0
5,006,457	+				-0.0
5,006,457	+				-1.4
5,006,458	-				-0.8
5,006,458	-				-0.2
5,006,521	+				+0.0
5,006,521	+				-0.4
5,006,522	-				-1.4
5,006,522	-				+0.1
5,006,594	+				-0.7
5,006,594	+				-0.1
5,006,595	-				-0.9
5,006,613	-		Echvi_4192	0.11	+0.2
5,006,623	-		Echvi_4192	0.11	-0.7
5,006,623	-		Echvi_4192	0.11	+0.1
5,006,657	-		Echvi_4192	0.13	+0.6
5,006,723	+		Echvi_4192	0.18	-0.5
5,006,749	-		Echvi_4192	0.20	+0.6
5,006,757	-		Echvi_4192	0.20	+0.1
5,006,757	-		Echvi_4192	0.20	-0.8
5,006,757	-		Echvi_4192	0.20	+2.6
5,006,757	-		Echvi_4192	0.20	-0.2
5,006,757	-		Echvi_4192	0.20	+0.6
5,006,761	+		Echvi_4192	0.20	+0.6
5,006,762	-		Echvi_4192	0.20	-0.6
5,006,762	-		Echvi_4192	0.20	-0.7
5,006,762	-		Echvi_4192	0.20	-0.4
5,006,793	-		Echvi_4192	0.22	-0.4
5,006,799	-		Echvi_4192	0.23	-0.9
5,006,799	-		Echvi_4192	0.23	+0.3