Experiment: m.b. Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3742 and Echvi_3743 are separated by 110 nucleotides Echvi_3743 and Echvi_3744 are separated by 663 nucleotides
Echvi_3742: Echvi_3742 - Outer membrane protein, at 4,457,247 to 4,458,581
_3742
Echvi_3743: Echvi_3743 - Transcriptional regulator, at 4,458,692 to 4,459,264
_3743
Echvi_3744: Echvi_3744 - hypothetical protein, at 4,459,928 to 4,460,182
_3744
Position (kb)
4458
4459
4460 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4457.696 kb on - strand, within Echvi_3742 at 4457.702 kb on - strand, within Echvi_3742 at 4457.718 kb on - strand, within Echvi_3742 at 4457.725 kb on + strand, within Echvi_3742 at 4457.725 kb on + strand, within Echvi_3742 at 4457.726 kb on - strand, within Echvi_3742 at 4457.726 kb on - strand, within Echvi_3742 at 4457.726 kb on - strand, within Echvi_3742 at 4457.825 kb on + strand, within Echvi_3742 at 4457.856 kb on + strand, within Echvi_3742 at 4457.856 kb on + strand, within Echvi_3742 at 4457.856 kb on + strand, within Echvi_3742 at 4457.863 kb on + strand, within Echvi_3742 at 4457.863 kb on + strand, within Echvi_3742 at 4457.864 kb on - strand, within Echvi_3742 at 4457.915 kb on - strand, within Echvi_3742 at 4457.954 kb on + strand, within Echvi_3742 at 4457.955 kb on - strand, within Echvi_3742 at 4458.046 kb on + strand, within Echvi_3742 at 4458.047 kb on - strand, within Echvi_3742 at 4458.116 kb on - strand, within Echvi_3742 at 4458.116 kb on - strand, within Echvi_3742 at 4458.116 kb on - strand, within Echvi_3742 at 4458.190 kb on + strand, within Echvi_3742 at 4458.190 kb on + strand, within Echvi_3742 at 4458.213 kb on + strand, within Echvi_3742 at 4458.214 kb on - strand, within Echvi_3742 at 4458.243 kb on + strand, within Echvi_3742 at 4458.267 kb on - strand, within Echvi_3742 at 4458.285 kb on - strand, within Echvi_3742 at 4458.316 kb on - strand, within Echvi_3742 at 4458.316 kb on - strand, within Echvi_3742 at 4458.451 kb on + strand at 4458.452 kb on - strand at 4458.458 kb on + strand at 4458.458 kb on + strand at 4458.458 kb on + strand at 4458.480 kb on + strand at 4458.514 kb on + strand at 4458.535 kb on - strand at 4458.555 kb on + strand at 4458.555 kb on + strand at 4458.555 kb on + strand at 4458.605 kb on - strand at 4458.605 kb on - strand at 4458.608 kb on + strand at 4458.609 kb on - strand at 4458.616 kb on + strand at 4458.617 kb on - strand at 4458.617 kb on - strand at 4458.620 kb on + strand at 4458.706 kb on + strand at 4458.707 kb on - strand at 4458.785 kb on + strand, within Echvi_3743 at 4458.785 kb on + strand, within Echvi_3743 at 4458.870 kb on - strand, within Echvi_3743 at 4458.996 kb on + strand, within Echvi_3743 at 4459.094 kb on + strand, within Echvi_3743 at 4459.098 kb on + strand, within Echvi_3743 at 4459.098 kb on + strand, within Echvi_3743 at 4459.098 kb on + strand, within Echvi_3743 at 4459.098 kb on + strand, within Echvi_3743 at 4459.098 kb on + strand, within Echvi_3743 at 4459.098 kb on + strand, within Echvi_3743 at 4459.098 kb on + strand, within Echvi_3743 at 4459.098 kb on + strand, within Echvi_3743 at 4459.098 kb on + strand, within Echvi_3743 at 4459.098 kb on + strand, within Echvi_3743 at 4459.099 kb on - strand, within Echvi_3743 at 4459.099 kb on - strand, within Echvi_3743 at 4459.099 kb on - strand, within Echvi_3743 at 4459.099 kb on - strand, within Echvi_3743 at 4459.099 kb on - strand, within Echvi_3743 at 4459.099 kb on - strand, within Echvi_3743 at 4459.244 kb on + strand at 4459.258 kb on + strand at 4459.259 kb on - strand at 4459.346 kb on - strand at 4459.365 kb on + strand at 4459.414 kb on - strand at 4459.416 kb on - strand at 4459.445 kb on + strand at 4459.446 kb on - strand at 4459.471 kb on + strand at 4459.484 kb on - strand at 4459.535 kb on + strand at 4459.548 kb on + strand at 4459.549 kb on - strand at 4459.549 kb on - strand at 4459.549 kb on - strand at 4459.557 kb on + strand at 4459.557 kb on + strand at 4459.558 kb on - strand at 4459.558 kb on - strand at 4459.578 kb on + strand at 4459.579 kb on - strand at 4459.579 kb on - strand at 4459.579 kb on - strand at 4459.680 kb on - strand at 4459.741 kb on + strand at 4459.742 kb on - strand at 4459.742 kb on - strand at 4459.749 kb on + strand at 4459.794 kb on + strand at 4459.795 kb on - strand at 4459.817 kb on - strand at 4459.817 kb on - strand at 4459.830 kb on + strand at 4459.830 kb on + strand at 4459.830 kb on + strand at 4459.831 kb on - strand at 4459.835 kb on - strand at 4459.905 kb on - strand at 4459.946 kb on - strand at 4459.965 kb on + strand, within Echvi_3744 at 4459.965 kb on + strand, within Echvi_3744 at 4459.992 kb on - strand, within Echvi_3744 at 4460.053 kb on + strand, within Echvi_3744 at 4460.053 kb on + strand, within Echvi_3744 at 4460.054 kb on - strand, within Echvi_3744 at 4460.141 kb on - strand at 4460.141 kb on - strand, within Echvi_3744 at 4460.145 kb on - strand, within Echvi_3744 at 4460.175 kb on - strand at 4460.175 kb on - strand at 4460.178 kb on - strand at 4460.178 kb on - strand at 4460.193 kb on + strand at 4460.226 kb on - strand at 4460.233 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml remove 4,457,696 - Echvi_3742 0.34 -1.8 4,457,702 - Echvi_3742 0.34 -1.1 4,457,718 - Echvi_3742 0.35 -1.2 4,457,725 + Echvi_3742 0.36 -0.9 4,457,725 + Echvi_3742 0.36 +0.2 4,457,726 - Echvi_3742 0.36 -0.9 4,457,726 - Echvi_3742 0.36 -0.3 4,457,726 - Echvi_3742 0.36 -1.4 4,457,825 + Echvi_3742 0.43 -1.4 4,457,856 + Echvi_3742 0.46 -0.8 4,457,856 + Echvi_3742 0.46 -0.4 4,457,856 + Echvi_3742 0.46 -3.0 4,457,863 + Echvi_3742 0.46 +0.5 4,457,863 + Echvi_3742 0.46 -1.0 4,457,864 - Echvi_3742 0.46 -0.3 4,457,915 - Echvi_3742 0.50 +0.3 4,457,954 + Echvi_3742 0.53 -1.8 4,457,955 - Echvi_3742 0.53 +1.3 4,458,046 + Echvi_3742 0.60 -0.9 4,458,047 - Echvi_3742 0.60 -1.6 4,458,116 - Echvi_3742 0.65 -1.1 4,458,116 - Echvi_3742 0.65 -0.1 4,458,116 - Echvi_3742 0.65 +0.9 4,458,190 + Echvi_3742 0.71 -3.3 4,458,190 + Echvi_3742 0.71 -1.3 4,458,213 + Echvi_3742 0.72 -2.5 4,458,214 - Echvi_3742 0.72 -0.7 4,458,243 + Echvi_3742 0.75 -1.1 4,458,267 - Echvi_3742 0.76 +0.2 4,458,285 - Echvi_3742 0.78 -2.1 4,458,316 - Echvi_3742 0.80 -0.3 4,458,316 - Echvi_3742 0.80 -0.1 4,458,451 + -1.4 4,458,452 - +0.6 4,458,458 + -3.0 4,458,458 + -1.9 4,458,458 + -2.5 4,458,480 + -2.2 4,458,514 + -1.3 4,458,535 - -1.5 4,458,555 + -2.4 4,458,555 + -1.4 4,458,555 + -2.2 4,458,605 - -0.4 4,458,605 - +0.3 4,458,608 + -1.6 4,458,609 - -0.3 4,458,616 + -0.5 4,458,617 - -0.4 4,458,617 - -0.7 4,458,620 + -0.9 4,458,706 + -2.4 4,458,707 - +0.1 4,458,785 + Echvi_3743 0.16 -0.8 4,458,785 + Echvi_3743 0.16 -1.1 4,458,870 - Echvi_3743 0.31 -0.7 4,458,996 + Echvi_3743 0.53 -1.3 4,459,094 + Echvi_3743 0.70 -1.2 4,459,098 + Echvi_3743 0.71 -0.8 4,459,098 + Echvi_3743 0.71 -0.3 4,459,098 + Echvi_3743 0.71 -2.2 4,459,098 + Echvi_3743 0.71 -1.0 4,459,098 + Echvi_3743 0.71 -0.2 4,459,098 + Echvi_3743 0.71 -0.1 4,459,098 + Echvi_3743 0.71 -2.1 4,459,098 + Echvi_3743 0.71 -0.1 4,459,098 + Echvi_3743 0.71 -2.6 4,459,098 + Echvi_3743 0.71 -3.1 4,459,099 - Echvi_3743 0.71 -0.5 4,459,099 - Echvi_3743 0.71 +0.1 4,459,099 - Echvi_3743 0.71 -0.5 4,459,099 - Echvi_3743 0.71 -0.5 4,459,099 - Echvi_3743 0.71 -0.7 4,459,099 - Echvi_3743 0.71 -0.2 4,459,244 + -0.8 4,459,258 + -1.5 4,459,259 - -0.3 4,459,346 - -0.0 4,459,365 + +0.1 4,459,414 - -0.5 4,459,416 - -0.3 4,459,445 + -1.6 4,459,446 - -0.4 4,459,471 + -0.3 4,459,484 - -0.4 4,459,535 + -0.1 4,459,548 + -1.3 4,459,549 - -0.1 4,459,549 - -0.3 4,459,549 - -0.1 4,459,557 + -0.8 4,459,557 + -0.2 4,459,558 - -0.0 4,459,558 - -0.1 4,459,578 + -0.1 4,459,579 - -0.2 4,459,579 - -0.4 4,459,579 - -0.4 4,459,680 - -0.0 4,459,741 + -0.8 4,459,742 - -0.2 4,459,742 - +0.1 4,459,749 + +0.2 4,459,794 + +0.9 4,459,795 - -0.8 4,459,817 - -0.5 4,459,817 - +0.6 4,459,830 + -0.1 4,459,830 + +0.3 4,459,830 + +0.2 4,459,831 - +0.0 4,459,835 - -0.1 4,459,905 - +0.8 4,459,946 - -0.0 4,459,965 + Echvi_3744 0.15 -0.5 4,459,965 + Echvi_3744 0.15 +0.2 4,459,992 - Echvi_3744 0.25 -0.0 4,460,053 + Echvi_3744 0.49 -0.1 4,460,053 + Echvi_3744 0.49 -0.5 4,460,054 - Echvi_3744 0.49 -0.8 4,460,141 - -0.5 4,460,141 - Echvi_3744 0.84 -0.1 4,460,145 - Echvi_3744 0.85 -0.4 4,460,175 - -0.9 4,460,175 - +1.1 4,460,178 - -0.2 4,460,178 - +0.3 4,460,193 + -1.1 4,460,226 - +0.3 4,460,233 - +0.6
Or see this region's nucleotide sequence